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6BMD
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BU of 6bmd by Molmil
RNA hairpin containing GpppG-oligo to mimic intermediate formed by activated monomer and activated downstream helper
Descriptor: RNA (5'-D(*(GP3))-R(P*CP*AP*CP*CP*UP*CP*A)-3'), RNA (5'-R(P*GP*AP*GP*GP*UP*GP*(LCC)P*(LCC)P*GP*AP*GP*CP*GP*CP*GP*AP*AP*AP*GP*CP*GP*CP*UP*C)-3')
Authors:Zhang, W, Szostak, J.W.
Deposit date:2017-11-14
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide.
J. Am. Chem. Soc., 140, 2018
8Q4O
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BU of 8q4o by Molmil
RNA G-quadruplex from the 5'-UTR of human tyrosine kinase 2 (TYK2)
Descriptor: RNA (5'-R(*CP*GP*GP*UP*AP*GP*CP*GP*GP*GP*UP*AP*UP*GP*GP*GP*UP*CP*CP*GP*GP*GP*U)-3')
Authors:Toplishek, M, Kocman, V.
Deposit date:2023-08-07
Release date:2024-03-06
Method:SOLUTION NMR
Cite:High-Resolution Structure of RNA G-Quadruplex Containing Unique Structural Motifs Originating from the 5'-UTR of Human Tyrosine Kinase 2 (TYK2).
Acs Omega, 9, 2024
5AF0
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BU of 5af0 by Molmil
MAEL domain from Bombyx mori Maelstrom
Descriptor: MAELSTROM, ZINC ION
Authors:Chen, K, Campbell, E, Pandey, R.R, Yang, Z, McCarthy, A.A, Pillai, R.S.
Deposit date:2015-01-13
Release date:2015-04-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Metazoan Maelstrom is an RNA-Binding Protein that Has Evolved from an Ancient Nuclease Active in Protists.
RNA, 21, 2015
3K0J
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BU of 3k0j by Molmil
Crystal structure of the E. coli ThiM riboswitch in complex with thiamine pyrophosphate and the U1A crystallization module
Descriptor: MAGNESIUM ION, RNA (87-MER), THIAMINE DIPHOSPHATE, ...
Authors:Kulshina, N, Edwards, T.E, Ferre-D'Amare, A.R.
Deposit date:2009-09-24
Release date:2009-12-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch.
Rna, 16, 2010
4PMI
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BU of 4pmi by Molmil
Crystal structure of Rev and Rev-response-element RNA complex
Descriptor: PHOSPHATE ION, Protein Rev, Rev-Response-Element RNA
Authors:Jayaraman, B, Crosby, D.C, Homer, C, Ribeiro, I, Mavor, D, Frankel, A.D.
Deposit date:2014-05-21
Release date:2014-12-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:RNA-directed remodeling of the HIV-1 protein Rev orchestrates assembly of the Rev-Rev response element complex.
Elife, 4, 2014
5VJB
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BU of 5vjb by Molmil
Guanidine-II riboswitch P2 hairpin dimer with 5-bromoU substitution from Pseudomonas aeruginosa
Descriptor: GUANIDINE, MAGNESIUM ION, RNA (5'-R(*GP*CP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*(5BU)P*GP*C)-3'), ...
Authors:Reiss, C.W, Strobel, S.A.
Deposit date:2017-04-19
Release date:2017-06-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for ligand binding to the guanidine-II riboswitch.
RNA, 23, 2017
7NQ4
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BU of 7nq4 by Molmil
Human tRNA guanine transglycosylase (TGT), RNA-bound covalent intermediate
Descriptor: 9-DEAZAGUANINE, Queuine tRNA-ribosyltransferase accessory subunit 2, Queuine tRNA-ribosyltransferase catalytic subunit 1, ...
Authors:Sievers, K, Ficner, R.
Deposit date:2021-03-01
Release date:2021-08-11
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Structural and functional insights into human tRNA guanine transgylcosylase.
Rna Biol., 18, 2021
1L8V
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BU of 1l8v by Molmil
Crystal Structure of a Mutant (C109G,G212C) P4-P6 Domain of the Group I Intron from Tetrahymena Thermophilia
Descriptor: MAGNESIUM ION, P4-P6 RNA ribozyme domain
Authors:Battle, D.J, Doudna, J.A.
Deposit date:2002-03-21
Release date:2002-08-23
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Specificity of RNA-RNA Helix Recognition
Proc.Natl.Acad.Sci.USA, 99, 2002
3EX7
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BU of 3ex7 by Molmil
The crystal structure of EJC in its transition state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Eukaryotic initiation factor 4A-III, ...
Authors:Andersen, G.R, Nielsen, K.H.
Deposit date:2008-10-16
Release date:2008-12-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Mechanism of ATP turnover inhibition in the EJC
Rna, 15, 2009
3MW6
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BU of 3mw6 by Molmil
Crystal structure of NMB1681 from Neisseria meningitidis MC58, a FinO-like RNA chaperone
Descriptor: GLYCEROL, uncharacterized protein NMB1681
Authors:Tan, K, Zhou, M, Duggan, E, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-05-05
Release date:2010-06-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.209 Å)
Cite:N. meningitidis 1681 is a member of the FinO family of RNA chaperones.
Rna Biol., 7, 2010
5VJ9
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BU of 5vj9 by Molmil
Guanidine-II riboswitch P2 hairpin dimer from Pseudomonas aeruginosa
Descriptor: GUANIDINE, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Reiss, C.W, Strobel, S.A.
Deposit date:2017-04-19
Release date:2017-06-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structural basis for ligand binding to the guanidine-II riboswitch.
RNA, 23, 2017
1RRR
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BU of 1rrr by Molmil
RNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 10 STRUCTURES
Descriptor: RNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'), RNA (5'-R(*GP*CP*UP*UP*CP*UP*CP*UP*UP*C)-3')
Authors:Gyi, J.I, Lane, A.N, Conn, G.L, Brown, T.
Deposit date:1997-10-21
Release date:1998-04-22
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes.
Biochemistry, 37, 1998
2RQJ
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BU of 2rqj by Molmil
Quadruplex structure of an RNA aptamer against bovine prion protein
Descriptor: RNA (5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3')
Authors:Katahira, M, Mashima, T, Matsugami, A, Nishikawa, F, Nishikawa, S.
Deposit date:2009-07-18
Release date:2009-11-17
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Unique quadruplex structure and interaction of an RNA aptamer against bovine prion protein
Nucleic Acids Res., 37, 2009
6HBX
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BU of 6hbx by Molmil
The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with ethylguanidine
Descriptor: N-ETHYLGUANIDINE, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-08-13
Release date:2019-02-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structure-guided design of a high-affinity ligand for a riboswitch.
Rna, 25, 2019
6HBT
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BU of 6hbt by Molmil
The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with arcaine
Descriptor: 1-(4-carbamimidamidobutyl)guanidine, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SULFATE ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-08-13
Release date:2019-02-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structure-guided design of a high-affinity ligand for a riboswitch.
Rna, 25, 2019
6HC5
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BU of 6hc5 by Molmil
The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with audouine
Descriptor: 1-(5-carbamimidamidopentyl)guanidine, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-08-14
Release date:2019-02-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.413 Å)
Cite:Structure-guided design of a high-affinity ligand for a riboswitch.
Rna, 25, 2019
2JEA
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BU of 2jea by Molmil
Structure of a 9-subunit archaeal exosome bound to RNA
Descriptor: EXOSOME COMPLEX EXONUCLEASE 1, EXOSOME COMPLEX EXONUCLEASE 2, EXOSOME COMPLEX RNA-BINDING PROTEIN 1, ...
Authors:Lorentzen, E, Conti, E.
Deposit date:2007-01-16
Release date:2007-04-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:RNA Channelling by the Archaeal Exosome.
Embo Rep., 8, 2007
2A2E
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BU of 2a2e by Molmil
Crystal structure of the RNA subunit of Ribonuclease P. Bacterial A-type.
Descriptor: OSMIUM ION, RNA subunit of RNase P
Authors:Torres-Larios, A, Swinger, K.K, Krasilnikov, A.S, Pan, T, Mondragon, A.
Deposit date:2005-06-22
Release date:2005-09-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.85 Å)
Cite:Crystal structure of the RNA component of bacterial ribonuclease P.
Nature, 437, 2005
6TB7
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BU of 6tb7 by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine monophosphate (AMP)
Descriptor: ADENOSINE MONOPHOSPHATE, BROMIDE ION, MAGNESIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-01
Release date:2020-09-30
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD + riboswitch.
Rna, 26, 2020
7EDT
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BU of 7edt by Molmil
RNA duplex containing CC mispairs
Descriptor: RNA (5'-R(*GP*GP*AP*CP*UP*CP*CP*GP*GP*(5BU)P*CP*C)-3'), SODIUM ION, SPERMINE
Authors:Kondo, J, Tada, Y.
Deposit date:2021-03-17
Release date:2022-03-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:RNA duplex containing CC mispairs
To Be Published
1ZIG
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BU of 1zig by Molmil
GAGA RNA TETRALOOP, NMR, 10 STRUCTURES
Descriptor: RNA (5'-R(*GP*GP*GP*CP*GP*AP*GP*AP*GP*CP*CP*U)-3')
Authors:Jucker, F.M, Heus, H.A, Yip, P.F, Moors, E, Pardi, A.
Deposit date:1996-07-27
Release date:1997-03-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A network of heterogeneous hydrogen bonds in GNRA tetraloops.
J.Mol.Biol., 264, 1996
1ZIH
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BU of 1zih by Molmil
GCAA RNA TETRALOOP, NMR, 10 STRUCTURES
Descriptor: RNA (5'-R(*GP*GP*GP*CP*GP*CP*AP*AP*GP*CP*CP*U)-3')
Authors:Jucker, F.M, Heus, H.A, Yip, P.F, Moors, E, Pardi, A.
Deposit date:1996-07-27
Release date:1997-03-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A network of heterogeneous hydrogen bonds in GNRA tetraloops.
J.Mol.Biol., 264, 1996
1ZIF
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BU of 1zif by Molmil
GAAA RNA TETRALOOP, NMR, 10 STRUCTURES
Descriptor: RNA (5'-R(*GP*GP*GP*CP*GP*AP*AP*AP*GP*CP*CP*U)-3')
Authors:Jucker, F.M, Heus, H.A, Yip, P.F, Moors, E, Pardi, A.
Deposit date:1996-07-27
Release date:1997-03-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A network of heterogeneous hydrogen bonds in GNRA tetraloops.
J.Mol.Biol., 264, 1996
4AOB
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BU of 4aob by Molmil
SAM-I riboswitch containing the T. solenopsae Kt-23 in complex with S- adenosyl methionine
Descriptor: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:Schroeder, K.T, Daldrop, P, McPhee, S.A, Lilley, D.M.J.
Deposit date:2012-03-25
Release date:2012-05-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure and Folding of a Rare, Natural Kink Turn in RNA with an Aa Pair at the 2B2N Position.
RNA, 18, 2012
2BJ2
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BU of 2bj2 by Molmil
RNA LOOP-LOOP COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: RNA (5'-R(*GP*CP*AP*CP*CP*GP*AP*AP*CP*CP*AP*UP*CP*CP*GP*GP*UP*GP*C)-3'), RNA (5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*AP*UP*GP*GP*UP*UP*CP*GP*UP*UP*GP*CP*C)-3')
Authors:Lee, A.J, Crothers, D.M.
Deposit date:1998-07-02
Release date:1999-02-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The solution structure of an RNA loop-loop complex: the ColE1 inverted loop sequence.
Structure, 6, 1998

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