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6GE2
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exendin-4 based dual GLP-1/glucagon receptor agonist
Descriptor: (2~{S})-2-[[(4~{S})-4-(hexadecanoylamino)-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]pentanedioic acid, Exendin-4
Authors:Evers, A, Kurz, M.
Deposit date:2018-04-25
Release date:2018-06-20
Last modified:2025-04-09
Method:SOLUTION NMR
Cite:Dual Glucagon-like Peptide 1 (GLP-1)/Glucagon Receptor Agonists Specifically Optimized for Multidose Formulations.
J. Med. Chem., 61, 2018
7XTF
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BU of 7xtf by Molmil
Crystal Structure of PL-5 family polysaccharide lyase PanPL-Y226F mutant from Pandoraea apista in apo form at pH5.5
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Poly(Beta-D-mannuronate) lyase
Authors:Dash, P, Acharya, R.
Deposit date:2022-05-17
Release date:2022-08-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Distinct Modes of Hidden Structural Dynamics in the Functioning of an Allosteric Polysaccharide Lyase.
Acs Cent.Sci., 8, 2022
6D3Z
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BU of 6d3z by Molmil
Protease SFTI complex
Descriptor: Plasminogen, Trypsin inhibitor 1
Authors:Law, R.H.P, Wu, G.
Deposit date:2018-04-17
Release date:2019-01-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Highly Potent and Selective Plasmin Inhibitors Based on the Sunflower Trypsin Inhibitor-1 Scaffold Attenuate Fibrinolysis in Plasma.
J. Med. Chem., 62, 2019
7UAZ
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BU of 7uaz by Molmil
Crystal structure of human CYP3A4 with the caged inhibitor
Descriptor: (N-[([2,2'-bipyridin]-5-yl-kappa~2~N~1~,N~1'~)methyl]-3-{[(pyridin-3-yl)methyl]sulfanyl}propanamide)bis[2-(pyridin-2-yl-kappaN)phenyl-kappaC~1~]iridium, Cytochrome P450 3A4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sevrioukova, I.F.
Deposit date:2022-03-14
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Ir(III)-Based Agents for Monitoring the Cytochrome P450 3A4 Active Site Occupancy.
Inorg.Chem., 61, 2022
5JQ9
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BU of 5jq9 by Molmil
Yersinia pestis DHPS with pterine-sulfa conjugate Compound 16
Descriptor: 1,2-ETHANEDIOL, 4-{[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino}-N-(3,4-dimethyl-1,2-oxazol-5-yl)benzene-1-sulfonamide, Dihydropteroate synthase
Authors:Wu, Y, White, S.W.
Deposit date:2016-05-04
Release date:2016-08-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Pterin-sulfa conjugates as dihydropteroate synthase inhibitors and antibacterial agents.
Bioorg.Med.Chem.Lett., 26, 2016
7UAY
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BU of 7uay by Molmil
Crystal structure of human CYP3A4 with the caged inhibitor
Descriptor: (N-[([2,2'-bipyridin]-5-yl-kappa~2~N~1~,N~1'~)methyl]-3-{[(pyridin-3-yl)methyl]sulfanyl}propanamide)bis[2-(quinolin-2-yl-kappaN)phenyl-kappaC~1~]iridium, Cytochrome P450 3A4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sevrioukova, I.F.
Deposit date:2022-03-14
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Ir(III)-Based Agents for Monitoring the Cytochrome P450 3A4 Active Site Occupancy.
Inorg.Chem., 61, 2022
9F1M
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BU of 9f1m by Molmil
First bromodomain of BRD4 in complex with ISOX-DUAL based degrader 45
Descriptor: 1,2-ETHANEDIOL, 1-[2-[7-[2-[4-[2-[2-[2-[4-[3-(dimethylamino)propoxy]phenyl]ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzimidazol-1-yl]ethyl]piperazin-1-yl]ethanoylamino]heptanoylamino]-3,3-dimethyl-butanoyl]-N-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide, Bromodomain-containing protein 4, ...
Authors:Balourdas, D.I, Edmonds, A.K, Marsh, G.P, Maple, H.J, Spencer, J, Knapp, S, Joerger, A.C, Structural Genomics Consortium (SGC)
Deposit date:2024-04-19
Release date:2024-09-11
Last modified:2025-09-24
Method:X-RAY DIFFRACTION (1.90001261 Å)
Cite:Structure-Guided Design of ISOX-DUAL-Based Degraders Targeting BRD4 and CBP/EP300: A Case of Degrader Collapse.
J.Med.Chem., 68, 2025
9F1J
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BU of 9f1j by Molmil
First bromodomain of BRD4 in complex with ISOX-DUAL based degrader 14
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, N-[2-[2-[2-[2-[2-[2-[2,6-bis(oxidanylidene)piperidin-3-yl]-1,3-bis(oxidanylidene)isoindol-4-yl]oxyethanoylamino]ethoxy]ethoxy]ethoxy]ethyl]-4-[4-[2-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-(2-morpholin-4-ylethyl)benzimidazol-2-yl]ethyl]phenoxy]butanamide
Authors:Balourdas, D.I, Edmonds, A.K, Marsh, G.P, Maple, H.J, Spencer, J, Knapp, S, Joerger, A.C, Structural Genomics Consortium (SGC)
Deposit date:2024-04-19
Release date:2024-09-11
Last modified:2025-09-24
Method:X-RAY DIFFRACTION (1.13003039 Å)
Cite:Structure-Guided Design of ISOX-DUAL-Based Degraders Targeting BRD4 and CBP/EP300: A Case of Degrader Collapse.
J.Med.Chem., 68, 2025
9F1L
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BU of 9f1l by Molmil
First bromodomain of BRD4 in complex with ISOX-DUAL based degrader 35
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, N-[2-[2-[(3R)-2,6-bis(oxidanylidene)piperidin-3-yl]-1,3-bis(oxidanylidene)isoindol-4-yl]oxyethyl]-2-[4-[2-[2-[2-[4-[3-(dimethylamino)propoxy]phenyl]ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzimidazol-1-yl]ethyl]piperazin-1-yl]ethanamide
Authors:Balourdas, D.I, Edmonds, A.K, Marsh, G.P, Maple, H.J, Spencer, J, Knapp, S, Joerger, A.C, Structural Genomics Consortium (SGC)
Deposit date:2024-04-19
Release date:2024-09-11
Last modified:2025-09-24
Method:X-RAY DIFFRACTION (1.30000627 Å)
Cite:Structure-Guided Design of ISOX-DUAL-Based Degraders Targeting BRD4 and CBP/EP300: A Case of Degrader Collapse.
J.Med.Chem., 68, 2025
9F1K
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BU of 9f1k by Molmil
First bromodomain of BRD4 in complex with ISOX-DUAL based inhibitor 30
Descriptor: 1,2-ETHANEDIOL, 2-[4-[2-[2-[2-[4-[3-(dimethylamino)propoxy]phenyl]ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzimidazol-1-yl]ethyl]piperazin-1-yl]-N-(2-methoxyethyl)ethanamide, Bromodomain-containing protein 4
Authors:Balourdas, D.I, Edmonds, A.K, Marsh, G.P, Maple, H.J, Spencer, J, Knapp, S, Joerger, A.C, Structural Genomics Consortium (SGC)
Deposit date:2024-04-19
Release date:2024-09-11
Last modified:2025-09-24
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Structure-Guided Design of ISOX-DUAL-Based Degraders Targeting BRD4 and CBP/EP300: A Case of Degrader Collapse.
J.Med.Chem., 68, 2025
5ENN
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BU of 5enn by Molmil
The crystal structure of Human VPS34 in complex with a selective and potent inhibitor
Descriptor: 1-[[4-(cyclopropylmethyl)-5-[2-(pyridin-4-ylamino)pyrimidin-4-yl]pyrimidin-2-yl]amino]-2-methyl-propan-2-ol, GLYCEROL, Phosphatidylinositol 3-kinase catalytic subunit type 3, ...
Authors:Kearney, E.P.
Deposit date:2015-11-09
Release date:2016-11-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Potent, selective, and orally bioavailable inhibitors of VPS34 provide chemical tools to modulate autophagy in vivo
To Be Published
7R7R
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BU of 7r7r by Molmil
Structure of Human Anaplastic Lymphoma Kinase Domain in complex with ((2~{R})-2-[5-[6-amino-5-[(1~{R})-1-[5-fluoro-2-(triazol-2-yl)phenyl]ethoxy]-3-pyridyl]-4-methyl-thiazol-2-yl]propane-1,2-diol)
Descriptor: (2R)-2-[5-(6-amino-5-{(1R)-1-[2-(1,3-dihydro-2H-1,2,3-triazol-2-yl)-5-fluorophenyl]ethoxy}pyridin-3-yl)-4-methyl-1,3-thiazol-2-yl]propane-1,2-diol, ALK tyrosine kinase receptor
Authors:McTigue, M.
Deposit date:2021-06-25
Release date:2022-06-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.935 Å)
Cite:Analysis of lorlatinib analogs reveals a roadmap for targeting diverse compound resistance mutations in ALK-positive lung cancer.
Nat Cancer, 3, 2022
4Z93
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BU of 4z93 by Molmil
BRD4 bromodomain 2 in complex with gamma-carboline-containing compound, number 18.
Descriptor: 1,2-ETHANEDIOL, 1-(3-cyclopropyl-5-methyl-1H-pyrazol-4-yl)-7-(3,5-dimethyl-1,2-oxazol-4-yl)-8-methoxy-5H-pyrido[4,3-b]indole, Bromodomain-containing protein 4
Authors:Meagher, J.L, Stuckey, J.A.
Deposit date:2015-04-09
Release date:2015-07-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Structure-Based Design of gamma-Carboline Analogues as Potent and Specific BET Bromodomain Inhibitors.
J.Med.Chem., 58, 2015
5HU9
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BU of 5hu9 by Molmil
Crystal structure of ABL1 in complex with CHMFL-074
Descriptor: 1,2-ETHANEDIOL, 4-[(4-methylpiperazin-1-yl)methyl]-N-(4-methyl-3-{[1-(pyridin-3-ylcarbonyl)piperidin-4-yl]oxy}phenyl)-3-(trifluoromethyl)benzamide, CHLORIDE ION, ...
Authors:Kong, L.L, Yun, C.H.
Deposit date:2016-01-27
Release date:2016-07-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.529 Å)
Cite:Discovery and characterization of a novel potent type II native and mutant BCR-ABL inhibitor (CHMFL-074) for Chronic Myeloid Leukemia (CML)
Oncotarget, 7, 2016
7E4L
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BU of 7e4l by Molmil
Conversion of pyrophosphate-dependent myo-inositol-1 kinase into myo-inositol-3 kinase by N78L/S89L mutation
Descriptor: MAGNESIUM ION, METHYLENEDIPHOSPHONIC ACID, PfkB domain-containing protein
Authors:Tashiro, R, Miki, K, Fujihashi, M.
Deposit date:2021-02-14
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Altering the Phosphorylation Position of Pyrophosphate-Dependent myo -Inositol-1-Kinase Based on Its Crystal Structure.
Acs Chem.Biol., 16, 2021
8ZST
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BU of 8zst by Molmil
Lysozyme Crystallized with Bioassembler on Earth
Descriptor: 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID, CHLORIDE ION, GADOLINIUM ATOM, ...
Authors:MacCarthy, C, Koudan, E.V, Petrov, S.V, Levin, A.A, Khesuani, Y.D, Borshchevskiy, V.
Deposit date:2024-06-05
Release date:2025-05-28
Last modified:2025-06-25
Method:X-RAY DIFFRACTION (0.8 Å)
Cite:Exploring the potential of a bioassembler for protein crystallization in space.
Npj Microgravity, 11, 2025
6QN4
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BU of 6qn4 by Molmil
Death-associated Protein Kinase 1 (DAPK1) catalytic and auto-regulatory domains with S289E and S308E mutations
Descriptor: ACETATE ION, Death-associated protein kinase 1, GLYCEROL, ...
Authors:Huart, A.-S, Wilmanns, M.
Deposit date:2019-02-08
Release date:2019-08-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular mechanisms behind DAPK regulation: how phosphorylation switches work
To Be Published
6QOD
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BU of 6qod by Molmil
Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 7 (2-Amino-6-fluorobenzothiazole)
Descriptor: 6-fluoro-1,3-benzothiazol-2-amine, tRNA (guanine-N(1)-)-methyltransferase
Authors:Thomas, S.E, Whitehouse, A.J, Coyne, A.G, Abell, C, Mendes, V, Blundell, T.L.
Deposit date:2019-02-12
Release date:2020-03-04
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.852 Å)
Cite:Fragment-based discovery of a new class of inhibitors targeting mycobacterial tRNA modification.
Nucleic Acids Res., 48, 2020
8ZSU
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BU of 8zsu by Molmil
Lysozyme Crystallized with Bioassembler in Space Microgravity
Descriptor: 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID, CHLORIDE ION, GADOLINIUM ATOM, ...
Authors:MacCarthy, C, Koudan, E.V, Petrov, S.V, Levin, A.A, Khesuani, Y.D, Borshchevskiy, V.
Deposit date:2024-06-05
Release date:2025-05-28
Last modified:2025-06-25
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Exploring the potential of a bioassembler for protein crystallization in space.
Npj Microgravity, 11, 2025
5HA6
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BU of 5ha6 by Molmil
Crystal structure of human syncytin-1 fusion subunit
Descriptor: CHLORIDE ION, Syncytin-1
Authors:Aydin, H, Lee, J.E.
Deposit date:2015-12-30
Release date:2017-08-02
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.0006 Å)
Cite:Structural and functional characterization of the human Syncytin 1 fusion protein
To Be Published
6CYC
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BU of 6cyc by Molmil
PDE2 in complex with compound 5
Descriptor: 1,2-ETHANEDIOL, 3-(hydroxymethyl)-1-{(1S)-1-[4-(trifluoromethyl)phenyl]ethyl}-1H-pyrazolo[3,4-d]pyrimidine-4,6(5H,7H)-dione, MAGNESIUM ION, ...
Authors:Lu, J.
Deposit date:2018-04-05
Release date:2018-09-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structure-Guided Design and Procognitive Assessment of a Potent and Selective Phosphodiesterase 2A Inhibitor.
ACS Med Chem Lett, 9, 2018
6TD5
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BU of 6td5 by Molmil
Leishmania tarentolae proteasome 20S subunit complexed with LXE408 and bortezomib
Descriptor: N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE, Proteasome endopeptidase complex, Proteasome subunit alpha type, ...
Authors:Srinivas, H.
Deposit date:2019-11-07
Release date:2020-08-26
Last modified:2025-10-01
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Discovery and Characterization of Clinical Candidate LXE408 as a Kinetoplastid-Selective Proteasome Inhibitor for the Treatment of Leishmaniases.
J.Med.Chem., 63, 2020
4K6K
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BU of 4k6k by Molmil
Crystal structure of CALB mutant D223G from Candida antarctica
Descriptor: 1,2-ETHANEDIOL, Lipase B
Authors:An, J, Xie, Y, Feng, Y, Wu, G.
Deposit date:2013-04-16
Release date:2014-01-29
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Enhanced enzyme kinetic stability by increasing rigidity within the active site.
J.Biol.Chem., 289, 2014
5EIH
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BU of 5eih by Molmil
mAChE-TZ2/PA5 complex
Descriptor: 5-hept-6-ynyl-6-phenyl-phenanthridin-5-ium-3,8-diamine, ACETATE ION, Acetylcholinesterase, ...
Authors:Bourne, Y, Marchot, P.
Deposit date:2015-10-29
Release date:2016-01-20
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Steric and Dynamic Parameters Influencing In Situ Cycloadditions to Form Triazole Inhibitors with Crystalline Acetylcholinesterase.
J.Am.Chem.Soc., 138, 2016
6GA4
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BU of 6ga4 by Molmil
Bacteriorhodopsin, 1 ps state, real-space refined against 15% extrapolated map
Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ...
Authors:Nass Kovacs, G, Colletier, J.-P, Gruenbein, M.L, Stensitzki, T, Batyuk, A, Carbajo, S, Doak, R.B, Ehrenberg, D, Foucar, L, Gasper, R, Gorel, A, Hilpert, M, Kloos, M, Koglin, J, Reinstein, J, Roome, C.M, Schlesinger, R, Seaberg, M, Shoeman, R.L, Stricker, M, Boutet, S, Haacke, S, Heberle, J, Domratcheva, T, Schlichting, I.
Deposit date:2018-04-11
Release date:2019-04-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin.
Nat Commun, 10, 2019

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