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PDB: 249 results

5W64
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RNA Polymerase I Initial Transcribing Complex State 1
Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ...
Authors:Han, Y, He, Y.
Deposit date:2017-06-16
Release date:2017-07-26
Last modified:2019-11-27
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural mechanism of ATP-independent transcription initiation by RNA polymerase I.
Elife, 6, 2017
6F44
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RNA Polymerase III closed complex CC2.
Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ...
Authors:Vorlaender, M.K, Khatter, H, Wetzel, R, Hagen, W.J.H, Mueller, C.W.
Deposit date:2017-11-29
Release date:2018-01-17
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Molecular mechanism of promoter opening by RNA polymerase III.
Nature, 553, 2018
5C4A
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Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Barnes, C.O, Calero, M, Malik, I, Saphr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G.
Deposit date:2015-06-17
Release date:2015-08-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble.
Mol.Cell, 59, 2015
1NT9
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Complete 12-subunit RNA polymerase II
Descriptor: DNA-DIRECTED RNA POLYMERASE II 13.6 KD POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT, ...
Authors:Armache, K.-J, Kettenberger, H, Cramer, P.
Deposit date:2003-01-29
Release date:2003-04-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Architecture of initiation-competent 12-subunit RNA polymerase II
Proc.Natl.Acad.Sci.USA, 100, 2003
1R9S
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BU of 1r9s by Molmil
RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE
Descriptor: DNA strand, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 14.2 kDa polypeptide, ...
Authors:Westover, K.D, Bushnell, D.A, Kornberg, R.D.
Deposit date:2003-10-30
Release date:2004-11-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (4.25 Å)
Cite:Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center.
Cell(Cambridge,Mass.), 119, 2004
5W65
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RNA polymerase I Initial Transcribing Complex State 2
Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ...
Authors:Han, Y, He, Y.
Deposit date:2017-06-16
Release date:2017-08-02
Last modified:2019-11-27
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural mechanism of ATP-independent transcription initiation by RNA polymerase I.
Elife, 6, 2017
6F41
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RNA Polymerase III initially transcribing complex
Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ...
Authors:Vorlaender, M.K, Khatter, H, Wetzel, R, Hagen, W.J.H, Mueller, C.W.
Deposit date:2017-11-29
Release date:2018-01-17
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Molecular mechanism of promoter opening by RNA polymerase III.
Nature, 553, 2018
3K1F
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BU of 3k1f by Molmil
Crystal structure of RNA Polymerase II in complex with TFIIB
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Kostrewa, D, Zeller, M.E, Armache, K.-J, Seizl, M, Leike, K, Thomm, M, Cramer, P.
Deposit date:2009-09-27
Release date:2009-11-10
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (4.3 Å)
Cite:RNA polymerase II-TFIIB structure and mechanism of transcription initiation.
Nature, 462, 2009
3QT1
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BU of 3qt1 by Molmil
RNA polymerase II variant containing A Chimeric RPB9-C11 subunit
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Ruan, W, Lehmann, E, Thomm, M, Kostrewa, D, Cramer, P.
Deposit date:2011-02-22
Release date:2011-03-23
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (4.3 Å)
Cite:Evolution of two modes of intrinsic RNA polymerase transcript cleavage.
J.Biol.Chem., 286, 2011
2NVZ
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BU of 2nvz by Molmil
RNA Polymerase II elongation complex with UTP, updated 11/2006
Descriptor: 28-MER DNA template strand, 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3', ...
Authors:Wang, D, Bushnell, D.A, Westover, K.D, Kaplan, C.D, Kornberg, R.D.
Deposit date:2006-11-14
Release date:2006-12-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (4.3 Å)
Cite:Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis
Cell(Cambridge,Mass.), 127, 2006
5FYW
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Transcription initiation complex structures elucidate DNA opening (OC)
Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ...
Authors:Plaschka, C, Hantsche, M, Dienemann, C, Burzinski, C, Plitzko, J, Cramer, P.
Deposit date:2016-03-10
Release date:2016-05-18
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.35 Å)
Cite:Transcription Initiation Complex Structures Elucidate DNA Opening
Nature, 533, 2016
5OA1
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RNA polymerase I pre-initiation complex
Descriptor: ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA, ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA, ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA, ...
Authors:Sadian, Y, Tafur, L, Kosinski, J, Jakobi, A.J, Muller, C.W.
Deposit date:2017-06-20
Release date:2017-07-26
Last modified:2018-10-24
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structural insights into transcription initiation by yeast RNA polymerase I.
EMBO J., 36, 2017
8TVS
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BU of 8tvs by Molmil
Cryo-EM structure of backtracked Pol II in complex with Rad26
Descriptor: DNA (NTS), DNA (TS), DNA repair and recombination protein RAD26, ...
Authors:Sarsam, R.D, Lahiri, I, Leschziner, A.E.
Deposit date:2023-08-18
Release date:2024-01-24
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair.
Proc.Natl.Acad.Sci.USA, 121, 2024
6I84
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BU of 6i84 by Molmil
Structure of transcribing RNA polymerase II-nucleosome complex
Descriptor: DNA (158-MER), DNA (170-MER), DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Farnung, L, Vos, S.M, Cramer, P.
Deposit date:2018-11-19
Release date:2019-01-02
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structure of transcribing RNA polymerase II-nucleosome complex.
Nat Commun, 9, 2018
6CNF
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BU of 6cnf by Molmil
Yeast RNA polymerase III elongation complex
Descriptor: DNA (79-MER), DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ...
Authors:Han, Y, He, Y.
Deposit date:2018-03-08
Release date:2018-08-22
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural visualization of RNA polymerase III transcription machineries.
Cell Discov, 4, 2018
1R5U
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BU of 1r5u by Molmil
RNA POLYMERASE II TFIIB COMPLEX
Descriptor: DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 14.2 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, ...
Authors:Bushnell, D.A, Westover, K.D, Davis, R, Kornberg, R.D.
Deposit date:2003-10-13
Release date:2004-02-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms.
Science, 303, 2004
1Y77
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Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP
Descriptor: 5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*T*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*G)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', ...
Authors:Kettenberger, H, Armache, K.-J, Cramer, P.
Deposit date:2004-12-08
Release date:2005-01-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Complete RNA Polymerase II Elongation Complex Structure and Its Interactions with NTP and TFIIS
Mol.Cell, 16, 2004
5FJ9
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BU of 5fj9 by Molmil
Cryo-EM structure of yeast apo RNA polymerase III at 4.6 A
Descriptor: DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2, ...
Authors:Hoffmann, N.A, Jakobi, A.J, Moreno-Morcillo, M, Glatt, S, Kosinski, J, Hagen, W.J, Sachse, C, Muller, C.W.
Deposit date:2015-10-06
Release date:2015-11-25
Last modified:2019-10-30
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Molecular Structures of Unbound and Transcribing RNA Polymerase III.
Nature, 528, 2015
5M64
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BU of 5m64 by Molmil
RNA Polymerase I elongation complex with A49 tandem winged helix domain
Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ...
Authors:Tafur, L, Sadian, Y, Hoffmann, N.A, Jakobi, A.J, Wetzel, R, Hagen, W.J.H, Sachse, C, Muller, C.W.
Deposit date:2016-10-24
Release date:2016-12-21
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Molecular Structures of Transcribing RNA Polymerase I.
Mol. Cell, 64, 2016
7UIF
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BU of 7uif by Molmil
Mediator-PIC Early (Core B)
Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Gorbea Colon, J.J, Chen, S.-F, Tsai, K.L, Murakami, K.
Deposit date:2022-03-29
Release date:2023-02-15
Last modified:2023-03-08
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural basis of a transcription pre-initiation complex on a divergent promoter.
Mol.Cell, 83, 2023
6H68
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BU of 6h68 by Molmil
Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) with fully-ordered A49
Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ...
Authors:Sanz-Murillo, M, Xu, J, Gil-Carton, D, Wang, D, Fernandez-Tornero, C.
Deposit date:2018-07-26
Release date:2018-08-29
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural basis of RNA polymerase I stalling at UV light-induced DNA damage.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8TVQ
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BU of 8tvq by Molmil
Cryo-EM structure of CPD stalled 10-subunit Pol II in complex with Rad26
Descriptor: DNA (NTS), DNA (TS), DNA repair and recombination protein RAD26, ...
Authors:Sarsam, R.D, Lahiri, I, Leschziner, A.E.
Deposit date:2023-08-18
Release date:2024-01-24
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair.
Proc.Natl.Acad.Sci.USA, 121, 2024
5FJA
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BU of 5fja by Molmil
Cryo-EM structure of yeast RNA polymerase III at 4.7 A
Descriptor: DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10, DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2, ...
Authors:Hoffmann, N.A, Jakobi, A.J, Moreno-Morcillo, M, Glatt, S, Kosinski, J, Hagen, W.J, Sachse, C, Muller, C.W.
Deposit date:2015-10-06
Release date:2015-11-25
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (4.65 Å)
Cite:Molecular Structures of Unbound and Transcribing RNA Polymerase III.
Nature, 528, 2015
5OQJ
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BU of 5oqj by Molmil
STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH
Descriptor: DNA repair helicase RAD25, DNA repair helicase RAD3, DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Schilbach, S, Hantsche, M, Tegunov, D, Dienemann, C, Wigge, C, Henning, U, Cramer, P.
Deposit date:2017-08-11
Release date:2018-04-25
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Structures of transcription pre-initiation complex with TFIIH and Mediator.
Nature, 551, 2017
4BXZ
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BU of 4bxz by Molmil
RNA Polymerase II-Bye1 complex
Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ...
Authors:Kinkelin, K, Wozniak, G.G, Rothbart, S.B, Lidschreiber, M, Strahl, B.D, Cramer, P.
Deposit date:2013-07-16
Release date:2013-09-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (4.8 Å)
Cite:Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue
Proc.Natl.Acad.Sci.USA, 110, 2013

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