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PDB: 122 results

7DA8
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BU of 7da8 by Molmil
X-ray structure of a GB1:T2Q/D46K mutant
Descriptor: Immunoglobulin G-binding protein G
Authors:Manjula, R, Ramaswamy, S, Gosavi, S.
Deposit date:2020-10-15
Release date:2021-10-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:X-ray structure of a GB1:T2Q/D46K mutant
To Be Published
2FLP
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BU of 2flp by Molmil
Binary complex of the catalytic core of human DNA polymerase iota with DNA (template G)
Descriptor: DNA polymerase iota, DNA primer strand, DNA template strand
Authors:Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2006-01-06
Release date:2006-12-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:An incoming nucleotide imposes an anti to syn conformational change on the templating purine in the human DNA polymerase-iota active site.
Structure, 14, 2006
3Q8R
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BU of 3q8r by Molmil
Human DNA polymerase iota incorporating dGTP opposite 8-oxo-guanine
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*TP*CP*AP*(8OG)P*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Kirouac, K.N, Ling, H.
Deposit date:2011-01-06
Release date:2011-02-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Unique active site promotes error-free replication opposite an 8-oxo-guanine lesion by human DNA polymerase iota.
Proc.Natl.Acad.Sci.USA, 108, 2011
6O41
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BU of 6o41 by Molmil
Crystal structure of the unbound PGZL1 germline Fab fragment (PGZL1_gVmDmJ)
Descriptor: GLYCEROL, Immunoglobulin G-binding protein G (DOMAIN III), germline PGZL1_gVmDmJ heavy chain, ...
Authors:Irimia, A, Wilson, I.A.
Deposit date:2019-02-27
Release date:2019-12-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.465 Å)
Cite:An MPER antibody neutralizes HIV-1 using germline features shared among donors.
Nat Commun, 10, 2019
5KT2
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BU of 5kt2 by Molmil
Teranry complex of human DNA polymerase iota(26-445) inserting dCMPNPP opposite template G in the presence of Mg2+
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*TP*GP*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Choi, J.Y, Patra, A, Yeom, M, Lee, Y.S, Zhang, Q, Egli, M, Guengerich, F.P.
Deposit date:2016-07-11
Release date:2016-08-31
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.488 Å)
Cite:Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota.
J.Biol.Chem., 291, 2016
5BMI
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BU of 5bmi by Molmil
Nitroxide Spin Labels in Protein GB1: T44 Mutant, Crystal Form A
Descriptor: Immunoglobulin G-binding protein G, S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate
Authors:Cunningham, T.C, Horne, W.S, Saxena, S.
Deposit date:2015-05-22
Release date:2016-04-06
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Rotameric preferences of a protein spin label at edge-strand beta-sheet sites.
Protein Sci., 25, 2016
3EPG
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BU of 3epg by Molmil
Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*DTP*DCP*DTP*(2EG)P*DGP*DGP*DGP*DTP*DCP*DCP*DTP*DAP*DGP*DGP*DAP*DCP*DCP*(DOC))-3', DNA polymerase iota, ...
Authors:Pence, M.G.
Deposit date:2008-09-29
Release date:2008-12-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Lesion bypass of N2-ethylguanine by human DNA polymerase iota.
J.Biol.Chem., 284, 2009
2ALZ
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BU of 2alz by Molmil
Ternary Complex of hPoli with DNA and dCTP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(*TP*GP*GP*GP*GP*TP*CP*CP*T)-3', ...
Authors:Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2005-08-08
Release date:2005-10-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Human DNA Polymerase iota Incorporates dCTP Opposite Template G via a G.C+ Hoogsteen Base Pair.
Structure, 13, 2005
4FS1
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BU of 4fs1 by Molmil
Base pairing mechanism of N2,3-ethenoguanine with dTTP by human polymerase iota
Descriptor: DNA 5'-D(*TP*CP*TP*(EFG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3', DNA polymerase iota, MAGNESIUM ION, ...
Authors:Zhao, L.
Deposit date:2012-06-26
Release date:2012-08-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Basis of Miscoding of the DNA Adduct N2,3-Ethenoguanine by Human Y-family DNA Polymerases.
J.Biol.Chem., 287, 2012
2FLN
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BU of 2fln by Molmil
binary complex of catalytic core of human DNA polymerase iota with DNA (template A)
Descriptor: DNA polymerase iota, DNA primer strand, DNA template strand
Authors:Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2006-01-06
Release date:2006-12-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:An incoming nucleotide imposes an anti to syn conformational change on the templating purine in the human DNA polymerase-iota active site.
Structure, 14, 2006
4EBD
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BU of 4ebd by Molmil
Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota
Descriptor: 5'-D(P*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(P*CP*TP*GP*GP*GP*TP*CP*CP*T)-3', CALCIUM ION, ...
Authors:Eoff, R.L, Ketkar, A, Banerjee, S.
Deposit date:2012-03-23
Release date:2012-06-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.571 Å)
Cite:A Nucleotide-Analogue-Induced Gain of Function Corrects the Error-Prone Nature of Human DNA Polymerase iota.
J.Am.Chem.Soc., 134, 2012
2FLL
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BU of 2fll by Molmil
Ternary complex of human DNA polymerase iota with DNA and dTTP
Descriptor: DNA polymerase iota, DNA primer strand, DNA template strand, ...
Authors:Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2006-01-06
Release date:2006-12-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:An incoming nucleotide imposes an anti to syn conformational change on the templating purine in the human DNA polymerase-iota active site.
Structure, 14, 2006
6U8C
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BU of 6u8c by Molmil
Crystal structure of an engineered ultra-high affinity Fab-Protein G complex
Descriptor: Antibody heavy chain Fab, Antibody light chain Fab, Protein G
Authors:Slezak, T, Filippova, E.V, Davydova, E.K, Kossiakoff, A.A.
Deposit date:2019-09-04
Release date:2019-10-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:An engineered ultra-high affinity Fab-Protein G pair enables a modular antibody platform with multifunctional capability.
Protein Sci., 29, 2020
5ULW
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BU of 5ulw by Molmil
Structure of human DNA polymerase iota bound to template 1-methyl-deoxyadenosine
Descriptor: CHLORIDE ION, DNA (5'-D(*AP*GP*GP*AP*CP*CP*(DOC))-3'), DNA (5'-D(*TP*(MA7)P*GP*GP*GP*TP*CP*CP*T)-3'), ...
Authors:Jain, R, Aggarwal, A.K.
Deposit date:2017-01-25
Release date:2017-04-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.617 Å)
Cite:Mechanism of error-free DNA synthesis across N1-methyl-deoxyadenosine by human DNA polymerase-iota.
Sci Rep, 7, 2017
5KT3
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BU of 5kt3 by Molmil
Teranry complex of human DNA polymerase iota(26-445) inserting dCMPNPP opposite template G in the presence of Mn2+
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*TP*GP*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Choi, J.Y, Patra, A, Yeom, M, Lee, Y.S, Zhang, Q, Egli, M, Guengerich, F.P.
Deposit date:2016-07-11
Release date:2016-08-31
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota.
J.Biol.Chem., 291, 2016
6UUH
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BU of 6uuh by Molmil
Crystal structure of broad and potent HIV-1 neutralizing antibody 438-B11
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, B11 Fab Heavy Chain, B11 Fab Light Chain, ...
Authors:Kumar, S, Wilson, I.A.
Deposit date:2019-10-30
Release date:2020-09-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A V H 1-69 antibody lineage from an infected Chinese donor potently neutralizes HIV-1 by targeting the V3 glycan supersite.
Sci Adv, 6, 2020
5KT4
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BU of 5kt4 by Molmil
Teranry complex of human DNA polymerase iota R96G inserting dCMPNPP opposite template G in the presence of Mg2+
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*TP*GP*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Choi, J.Y, Patra, A, Yeom, M, Lee, Y.S, Zhang, Q, Egli, M, Guengerich, F.P.
Deposit date:2016-07-11
Release date:2016-08-31
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota.
J.Biol.Chem., 291, 2016
5KT5
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BU of 5kt5 by Molmil
Teranry complex of human DNA polymerase iota R96G inserting dCMPNPP opposite template G in the presence of Mn2+
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*TP*GP*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Choi, J.Y, Patra, A, Yeom, M, Lee, Y.S, Zhang, Q, Egli, M, Guengerich, F.P.
Deposit date:2016-07-11
Release date:2016-08-31
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.798 Å)
Cite:Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota.
J.Biol.Chem., 291, 2016
3NGD
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BU of 3ngd by Molmil
Structural Basis for Proficient Incorporation of dTTP Opposite O6-methylguanine by Human DNA Polymerase Iota
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*TP*CP*TP*(6OG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3', DNA polymerase iota
Authors:Pence, M.G.
Deposit date:2010-06-11
Release date:2010-10-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase {iota}.
J.Biol.Chem., 285, 2010
3UI3
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BU of 3ui3 by Molmil
Structural and Biochemical Characterization of HP0315 from Helicobacter pylori as a VapD Protein with an Endoribonuclease Activity
Descriptor: Immunoglobulin G-binding protein G, Virulence-associated protein D
Authors:Kwon, A.R, Kim, J.H, Lee, B.J.
Deposit date:2011-11-04
Release date:2012-02-08
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and biochemical characterization of HP0315 from Helicobacter pylori as a VapD protein with an endoribonuclease activity.
Nucleic Acids Res., 2012
3H4B
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BU of 3h4b by Molmil
Ternary complex of human DNA polymerase iota with template U/T and incoming dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(*TP*(BRU)P*GP*GP*GP*TP*CP*CP*T)-3', ...
Authors:Jain, R, Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2009-04-18
Release date:2009-07-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Replication across template T/U by human DNA polymerase-iota.
Structure, 17, 2009
4EYH
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BU of 4eyh by Molmil
Human DNA polymerase iota incorporating dCTP opposite N-(deoxyguanosin-8-yl)-1-aminopyrene lesion
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA polymerase iota, DNA primer, ...
Authors:Kirouac, K, Ling, H.
Deposit date:2012-05-01
Release date:2013-01-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Replication of a carcinogenic nitropyrene DNA lesion by human Y-family DNA polymerase.
Nucleic Acids Res., 41, 2013
3EPI
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BU of 3epi by Molmil
Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine and incoming TTP
Descriptor: 5'-D(*DTP*DCP*DTP*(2EG)P*DGP*DGP*DGP*DTP*DCP*DCP*DTP*DAP*DGP*DGP*DAP*DCP*DCP*(DOC))-3', DNA polymerase iota, PHOSPHATE ION, ...
Authors:Pence, M.G.
Deposit date:2008-09-29
Release date:2008-12-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Lesion bypass of N2-ethylguanine by human DNA polymerase iota.
J.Biol.Chem., 284, 2009
4EYI
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BU of 4eyi by Molmil
Human DNA polymerase iota incorporating dATP opposite N-(deoxyguanosin-8-yl)-1-aminopyrene lesion
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA polymerase iota, DNA primer, ...
Authors:Kirouac, K, Ling, H.
Deposit date:2012-05-01
Release date:2013-01-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Replication of a carcinogenic nitropyrene DNA lesion by human Y-family DNA polymerase.
Nucleic Acids Res., 41, 2013
4EBC
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BU of 4ebc by Molmil
Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota
Descriptor: 5'-D(P*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(P*CP*TP*GP*GP*GP*TP*CP*CP*T)-3', CALCIUM ION, ...
Authors:Eoff, R.L, Ketkar, A, Banerjee, S.
Deposit date:2012-03-23
Release date:2012-06-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.901 Å)
Cite:A Nucleotide-Analogue-Induced Gain of Function Corrects the Error-Prone Nature of Human DNA Polymerase iota.
J.Am.Chem.Soc., 134, 2012

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