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PDB: 118 件

6IG2
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Structure of mitochondrial CDP-DAG synthase Tam41 complexed with CTP, delta 74, F240A
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Phosphatidate cytidylyltransferase, mitochondrial
著者Jiao, H.Z, Yin, Y, Liu, Z.F.
登録日2018-09-23
公開日2019-07-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.882 Å)
主引用文献Structures of the Mitochondrial CDP-DAG Synthase Tam41 Suggest a Potential Lipid Substrate Pathway from Membrane to the Active Site.
Structure, 27, 2019
6INE
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Crystal Structure of human ASH1L-MRG15 complex
分子名称: GLYCEROL, Histone-lysine N-methyltransferase ASH1L, Mortality factor 4-like protein 1, ...
著者Hou, P, Huang, C, Liu, C.P, Yu, T, Yin, Y, Zhu, B, Xu, R.M.
登録日2018-10-25
公開日2019-03-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural Insights into Stimulation of Ash1L's H3K36 Methyltransferase Activity through Mrg15 Binding.
Structure, 27, 2019
6IG4
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Structure of mitochondrial CDP-DAG synthase Tam41, delta 74
分子名称: PLATINUM (II) ION, Phosphatidate cytidylyltransferase, mitochondrial, ...
著者Jiao, H.Z, Yin, Y, Liu, Z.F.
登録日2018-09-23
公開日2019-07-10
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.261 Å)
主引用文献Structures of the Mitochondrial CDP-DAG Synthase Tam41 Suggest a Potential Lipid Substrate Pathway from Membrane to the Active Site.
Structure, 27, 2019
8SWK
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Cryo-EM structure of NLRP3 closed hexamer
分子名称: 1-[4-(2-oxidanylpropan-2-yl)furan-2-yl]sulfonyl-3-(1,2,3,5-tetrahydro-s-indacen-4-yl)urea, ADENOSINE-5'-TRIPHOSPHATE, NACHT, ...
著者Yu, X, Matico, R.E, Miller, R, Schoubroeck, B.V, Grauwen, K, Suarez, J, Pietrak, B, Haloi, N, Yin, Y, Tresadern, G.J, Perez-Benito, L, Lindahl, E, Bottelbergs, A, Oehlrich, D, Opdenbosch, N.V, Sharma, S.
登録日2023-05-18
公開日2024-02-14
実験手法ELECTRON MICROSCOPY (4.32 Å)
主引用文献Cryo-EM structures of NLRP3 reveal its self-activation mechanism
Nat Commun, 2024
8SWF
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Cryo-EM structure of NLRP3 open octamer
分子名称: NACHT, LRR and PYD domains-containing protein 3
著者Yu, X, Matico, R.E, Miller, R, Schoubroeck, B.V, Grauwen, K, Suarez, J, Pietrak, B, Haloi, N, Yin, Y, Tresadern, G.J, Perez-Benito, L, Lindahl, E, Bottelbergs, A, Oehlrich, D, Opdenbosch, N.V, Sharma, S.
登録日2023-05-18
公開日2024-02-14
実験手法ELECTRON MICROSCOPY (3.39 Å)
主引用文献Cryo-EM structures of NLRP3 reveal its self-activation mechanism
Nat Commun, 2024
8SXN
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Structure of NLRP3 and NEK7 complex
分子名称: 1-[4-(2-oxidanylpropan-2-yl)furan-2-yl]sulfonyl-3-(1,2,3,5-tetrahydro-s-indacen-4-yl)urea, ADENOSINE-5'-TRIPHOSPHATE, NACHT, ...
著者Yu, X, Matico, R.E, Miller, R, Schoubroeck, B.V, Grauwen, K, Suarez, J, Pietrak, B, Haloi, N, Yin, Y, Tresadern, G.J, Perez-Benito, L, Lindahl, E, Bottelbergs, A, Oehlrich, D, Opdenbosch, N.V, Sharma, S.
登録日2023-05-22
公開日2024-02-14
実験手法ELECTRON MICROSCOPY (4.04 Å)
主引用文献Cryo-EM structures of NLRP3 reveal its self-activation mechanism
Nat Commun, 2024
7R6V
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Human EXOG complexed with dRP-containing DNA
分子名称: DNA (5'-D(*CP*GP*CP*AP*CP*GP*TP*CP*AP*GP*AP*A)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*GP*TP*GP*CP*G)-3'), MAGNESIUM ION, ...
著者Szymanski, M.R, Yin, Y.W.
登録日2021-06-23
公開日2022-08-24
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Human EXOG possesses strong AP hydrolysis activity
To Be Published
8BZM
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FOXK1-ELF1-heterodimer bound to DNA
分子名称: DNA, ETS-related transcription factor Elf-1, Forkhead box protein K1, ...
著者Morgunova, E, Popov, A, Yin, Y, Taipale, J.
登録日2022-12-15
公開日2023-12-27
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献FOXK1-ELF1_heterodimer bound to DNA
To Be Published
8IJ1
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Protomer 1 and 2 of the asymmetry trimer of the Cul2-Rbx1-EloBC-FEM1B ubiquitin ligase complex
分子名称: Cullin-2, E3 ubiquitin-protein ligase RBX1, Elongin-B, ...
著者Dai, Z, Liang, L, Yin, Y.X.
登録日2023-02-24
公開日2024-02-28
最終更新日2024-04-03
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Structural insights into the ubiquitylation strategy of the oligomeric CRL2 FEM1B E3 ubiquitin ligase.
Embo J., 43, 2024
7R6T
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Human EXOG complexed with dRP-containing DNA
分子名称: DNA (5'-D(*CP*GP*CP*AP*CP*GP*TP*CP*AP*GP*A)-3'), DNA (5'-D(3DR)P*CP*TP*GP*AP*CP*GP*TP*GP*C)-3'), MAGNESIUM ION, ...
著者Szymanski, M.R, Yin, Y.W.
登録日2021-06-23
公開日2022-08-24
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Human EXOG possesses strong AP hydrolysis activity
To Be Published
7Z5I
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Transcription factor MYF5 bound to symmetrical site
分子名称: DNA (5'-D(P*AP*CP*GP*CP*GP*TP*CP*AP*GP*CP*TP*GP*AP*CP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*CP*GP*TP*CP*AP*GP*CP*TP*GP*AP*CP*GP*CP*GP*T)-3'), Myogenic factor 5
著者Morgunova, E, Popov, A, Yin, Y, Taipale, J.
登録日2022-03-09
公開日2023-03-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Transcription factor MYF5 bound to symmetrical site
To Be Published
7Z5K
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Transcription factor MYF5 bound to non-symmetrical site
分子名称: DNA (5'-D(P*AP*CP*GP*CP*GP*TP*CP*AP*GP*CP*TP*GP*TP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*CP*AP*AP*CP*AP*GP*CP*TP*GP*AP*CP*GP*CP*GP*T)-3'), Myogenic factor 5
著者Morgunova, E, Popov, A, Yin, Y, Taipale, J.
登録日2022-03-09
公開日2023-03-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Transcription factor MYF5 bound to non-symmetrical site
To Be Published
8PE9
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Complex between DDR1 DS-like domain and PRTH-101 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Liu, J, Chiang, H, Xiong, W, Laurent, V, Griffiths, S.C, Duelfer, J, Deng, H, Sun, X, Yin, Y.W, Li, W, Audoly, L.P, An, Z, Schuerpf, T, Li, R, Zhang, N.
登録日2023-06-13
公開日2023-06-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.152 Å)
主引用文献A highly selective humanized DDR1 mAb reverses immune exclusion by disrupting collagen fiber alignment in breast cancer.
J Immunother Cancer, 11, 2023
8BYX
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HOXB13-homodimer bound to DNA
分子名称: DNA, Homeobox protein Hox-B13
著者Morgunova, E, Popov, A, Yin, Y, Taipale, J.
登録日2022-12-14
公開日2023-12-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献HOXB13-homodimer bound to DNA
To Be Published
1O8T
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Global Structure and Dynamics of Human Apolipoprotein CII in Complex with Micelles: Evidence for increased mobility of the helix involved in the activation of lipoprotein lipase
分子名称: APOLIPOPROTEIN C-II
著者Zdunek, J, Martinez, G.V, Schleucher, J, Lycksell, P.O, Yin, Y, Nilsson, S, Shen, Y, Olivecrona, G, Wijmenga, S.
登録日2002-11-29
公開日2003-02-27
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Global Structure and Dynamics of Human Apolipoprotein Cii in Complex with Micelles: Evidence for Increased Mobility of the Helix Involved in the Activation of Lipoprotein Lipase
Biochemistry, 42, 2003
8D42
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Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in editing conformer (composite)
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*TP*AP*T)-3'), ...
著者Park, J, Yin, Y.W.
登録日2022-06-01
公開日2023-05-24
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (2.91 Å)
主引用文献Pol gamma coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity.
Nat.Struct.Mol.Biol., 30, 2023
8D37
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Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in replication conformer
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (25-MER), ...
著者Park, J, Yin, Y.W.
登録日2022-05-31
公開日2023-05-24
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (2.65 Å)
主引用文献Pol gamma coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity.
Nat.Struct.Mol.Biol., 30, 2023
8D3R
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Human mitochondrial DNA polymerase gamma ternary complex with GT basepair in intermediate conformer
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*TP*AP*T)-3'), ...
著者Park, J, Yin, Y.W.
登録日2022-06-01
公開日2023-05-24
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献Pol gamma coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity.
Nat.Struct.Mol.Biol., 30, 2023
8D33
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Human mitochondrial DNA polymerase gamma ternary complex with GC basepair
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (25-MER), ...
著者Park, J, Yin, Y.W.
登録日2022-05-31
公開日2023-05-24
最終更新日2023-07-05
実験手法ELECTRON MICROSCOPY (2.46 Å)
主引用文献Pol gamma coordinates DNA synthesis and proofreading to ensure mitochondrial genome integrity.
Nat.Struct.Mol.Biol., 30, 2023
8EW6
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Anti-human CD8 VHH complex with CD8 alpha
分子名称: Anti-CD8 alpha VHH, T-cell surface glycoprotein CD8 alpha chain
著者Kiefer, J.R, Williams, S, Davies, C.W, Koerber, J.T, Sriraman, S.K, Yin, Y.P.
登録日2022-10-21
公開日2022-11-23
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (1.904 Å)
主引用文献Development of an 18 F-labeled anti-human CD8 VHH for same-day immunoPET imaging.
Eur J Nucl Med Mol Imaging, 50, 2023
5TDH
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The crystal structure of the dominant negative mutant G protein alpha(i)-1-beta-1-gamma-2 G203A/A326S
分子名称: GUANOSINE-5'-DIPHOSPHATE, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Liu, P, Jia, M.-Z, Zhou, X.E, de Waal, P.W, Dickson, B.M, Liu, B, Hou, L, Yin, Y.-T, Kang, Y.-Y, Shi, Y, Melcher, K, Xu, H.E, Jiang, Y.
登録日2016-09-19
公開日2016-11-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献The structural basis of the dominant negative phenotype of the G alpha i1 beta 1 gamma 2 G203A/A326S heterotrimer
Acta Pharmacol.Sin., 37, 2016
3C8O
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The Crystal Structure of RraA from PAO1
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Regulator of ribonuclease activity A, ...
著者Luo, M, Niu, S, Yin, Y, Huang, A, Wang, D.
登録日2008-02-12
公開日2009-02-17
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The Crystal Structure of RraA from PAO1
To be published
3IKM
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Crystal structure of human mitochondrial DNA polymerase holoenzyme
分子名称: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2
著者Lee, Y.-S, Kennedy, W.D, Yin, Y.W.
登録日2009-08-06
公開日2009-11-03
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.24 Å)
主引用文献Structural insight into processive human mitochondrial DNA synthesis and disease-related polymerase mutations.
Cell(Cambridge,Mass.), 139, 2009
3IKL
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Crystal structure of Pol gB delta-I4.
分子名称: DNA polymerase subunit gamma-2, mitochondrial
著者Lee, Y.S, Kennedy, W.D, Yin, Y.W.
登録日2009-08-06
公開日2010-08-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural insight into processive human mitochondrial DNA synthesis and disease-related polymerase mutations.
Cell(Cambridge,Mass.), 139, 2009
6CMO
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Rhodopsin-Gi complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab Heavy chain, Fab light chain, ...
著者Kang, Y, Kuybeda, O, de Waal, P.W, Mukherjee, S, Van Eps, N, Dutka, P, Zhou, X.E, Bartesaghi, A, Erramilli, S, Morizumi, T, Gu, X, Yin, Y, Liu, P, Jiang, Y, Meng, X, Zhao, G, Melcher, K, Earnst, O.P, Kossiakoff, A.A, Subramaniam, S, Xu, H.E.
登録日2018-03-05
公開日2018-06-20
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Cryo-EM structure of human rhodopsin bound to an inhibitory G protein.
Nature, 558, 2018

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