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PDB: 351 results

2KNC
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BU of 2knc by Molmil
Platelet integrin ALFAIIB-BETA3 transmembrane-cytoplasmic heterocomplex
Descriptor: Integrin alpha-IIb, Integrin beta-3
Authors:Yang, J, Ma, Y, Page, R.C, Misra, S, Plow, E.F, Qin, J.
Deposit date:2009-08-20
Release date:2009-09-29
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Structure of an integrin alphaIIb beta3 transmembrane-cytoplasmic heterocomplex provides insight into integrin activation.
Proc.Natl.Acad.Sci.USA, 106, 2009
8KFA
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BU of 8kfa by Molmil
Cryo-EM structure of HSV-1 gB with D48 Fab complex
Descriptor: D48 heavy chain, D48 light chain, Envelope glycoprotein B
Authors:Yang, J, Sun, C, Fang, X, Zeng, M, Liu, Z.
Deposit date:2023-08-15
Release date:2024-01-03
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:The structure of HSV-1 gB bound to a potent neutralizing antibody reveals a conservative antigenic domain across herpesviruses
hlife, 2023
8H5U
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BU of 8h5u by Molmil
Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with neutralizing nanobody Nb-021
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody Nb-021, ...
Authors:Yang, J, Lin, S, Lu, G.W.
Deposit date:2022-10-13
Release date:2023-10-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Development of a bispecific nanobody conjugate broadly neutralizes diverse SARS-CoV-2 variants and structural basis for its broad neutralization.
Plos Pathog., 19, 2023
8H5T
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BU of 8h5t by Molmil
Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with neutralizing nanobody Nb-015
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody Nb-015, Spike protein S1
Authors:Yang, J, Lin, S, Lu, G.W.
Deposit date:2022-10-13
Release date:2023-10-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Development of a bispecific nanobody conjugate broadly neutralizes diverse SARS-CoV-2 variants and structural basis for its broad neutralization.
Plos Pathog., 19, 2023
5HM2
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BU of 5hm2 by Molmil
Crystal structure of the 3C protease from South African Territories type 2 foot-and-mouth disease virus
Descriptor: 3C proteinase
Authors:Yang, J, Leen, E.N, Curry, S.
Deposit date:2016-01-15
Release date:2016-03-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the 3C protease from Southern African Territories type 2 foot-and-mouth disease virus.
Peerj, 4, 2016
2MWN
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BU of 2mwn by Molmil
Talin-F3 / RIAM N-terminal Peptide complex
Descriptor: Amyloid beta A4 precursor protein-binding family B member 1-interacting protein, Talin-1
Authors:Yang, J, Zhu, L, Zhang, H, Hirbawi, J, Fukuda, K, Dwivedi, P, Liu, J, Byzova, T, Plow, E.F, Wu, J, Qin, J.
Deposit date:2014-11-13
Release date:2014-12-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Conformational activation of talin by RIAM triggers integrin-mediated cell adhesion.
Nat Commun, 5, 2014
8IL3
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BU of 8il3 by Molmil
Cryo-EM structure of CD38 in complex with FTL004
Descriptor: ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1, Heavy chain, Light chain
Authors:Yang, J, Wang, Y, Zhang, G.
Deposit date:2023-03-01
Release date:2023-03-29
Method:ELECTRON MICROSCOPY (3.86 Å)
Cite:FTL004, an anti-CD38 mAb with negligible RBC binding and enhanced pro-apoptotic activity, is a novel candidate for treatments of multiple myeloma and non-Hodgkin lymphoma.
J Hematol Oncol, 15, 2022
8W75
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BU of 8w75 by Molmil
Structure of Drosophila melanogaster L-2-hydroxyglutarate dehydrogenase
Descriptor: DODECYL-BETA-D-MALTOSIDE, FI05204p, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Yang, J, Chen, X, Jin, S, Ding, J.
Deposit date:2023-08-30
Release date:2023-11-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure and biochemical characterization of l-2-hydroxyglutarate dehydrogenase and its role in the pathogenesis of l-2-hydroxyglutaric aciduria.
J.Biol.Chem., 300, 2023
8W7F
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BU of 8w7f by Molmil
Structure of Drosophila melanogaster L-2-hydroxyglutarate dehydrogenase bound with FAD and a sulfate ion
Descriptor: DODECYL-BETA-D-MALTOSIDE, FI05204p, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Yang, J, Chen, X, Jin, S, Ding, J.
Deposit date:2023-08-30
Release date:2023-11-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.299 Å)
Cite:Structure and biochemical characterization of l-2-hydroxyglutarate dehydrogenase and its role in the pathogenesis of l-2-hydroxyglutaric aciduria.
J.Biol.Chem., 300, 2023
8W78
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BU of 8w78 by Molmil
Structure of Drosophila melanogaster L-2-hydroxyglutarate dehydrogenase in complex with FAD and 2-oxoglutarate
Descriptor: 2-OXOGLUTARIC ACID, DODECYL-BETA-D-MALTOSIDE, FI05204p, ...
Authors:Yang, J, Chen, X, Jin, S, Ding, J.
Deposit date:2023-08-30
Release date:2023-11-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Structure and biochemical characterization of l-2-hydroxyglutarate dehydrogenase and its role in the pathogenesis of l-2-hydroxyglutaric aciduria.
J.Biol.Chem., 300, 2023
8WD0
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BU of 8wd0 by Molmil
Crystal structure of T2R-TTL-Erianin complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-methoxy-5-[2-(3,4,5-trimethoxyphenyl)ethyl]phenol, CALCIUM ION, ...
Authors:Yang, J.
Deposit date:2023-09-14
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The cytotoxic natural compound erianin binds to colchicine site of beta-tubulin and overcomes taxane resistance
Bioorg.Chem., 150, 2024
7SXO
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BU of 7sxo by Molmil
Yeast Lon (PIM1) with endogenous substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Lon protease homolog, ...
Authors:Yang, J, Song, A.S, Wiseman, R.L, Lander, G.C.
Deposit date:2021-11-24
Release date:2022-01-12
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of hexameric yeast Lon protease (PIM1) highlights the importance of conserved structural elements.
J.Biol.Chem., 298, 2022
7W1S
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BU of 7w1s by Molmil
Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with neutralizing nanobody Nb-007
Descriptor: Nanobody Nb-007, Spike protein S1
Authors:Yang, J, Lin, S, Sun, H.L, Lu, G.W.
Deposit date:2021-11-20
Release date:2022-06-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:A Potent Neutralizing Nanobody Targeting the Spike Receptor-Binding Domain of SARS-CoV-2 and the Structural Basis of Its Intimate Binding.
Front Immunol, 13, 2022
8XBD
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BU of 8xbd by Molmil
GH18 family chitinase from cold seep metagenome
Descriptor: GH18 chitinase-like superfamily protein
Authors:Yang, J.
Deposit date:2023-12-06
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:GH18 family chitinase from cold seep metagenome
To Be Published
8XHO
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BU of 8xho by Molmil
Deep sea bacterial PET plastic hydrolase MtCut with mutation S178C
Descriptor: CALCIUM ION, PET plastic hydrolase
Authors:Yang, J.
Deposit date:2023-12-18
Release date:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Deep sea bacterial PET plastic hydrolase MtCut with mutation S178C
To Be Published
8XPH
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BU of 8xph by Molmil
Marine Planctomycetes laminarinase PtLam
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, Laminarinase PtLam
Authors:Yang, J.
Deposit date:2024-01-03
Release date:2024-08-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Marine Planctomycetes laminarinase PtLam
To Be Published
8XPK
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BU of 8xpk by Molmil
Marine bacterial laminarinase PtLam mutant E154A in complex with laminatriose
Descriptor: CALCIUM ION, Laminarinase, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-alpha-D-glucopyranose
Authors:Yang, J.
Deposit date:2024-01-03
Release date:2024-08-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Marine bacterial laminarinase PtLam mutant E154A in complex with laminatriose
To Be Published
8J0P
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BU of 8j0p by Molmil
Chitin binding SusD-like protein AqSusD from a marine Bacteroidetes
Descriptor: Chitin binding SusD-like protein
Authors:Yang, J.
Deposit date:2023-04-11
Release date:2023-11-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insights of a SusD-like protein in marine Bacteroidetes bacteria reveal the molecular basis for chitin recognition and acquisition.
Febs J., 291, 2024
2LR7
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BU of 2lr7 by Molmil
Cathelicidin-PY
Descriptor: Cathelicidin-PY
Authors:Yang, J.
Deposit date:2012-03-27
Release date:2013-03-27
Method:SOLUTION NMR
Cite:Structure of Cathelicidin-PY
To be Published
8XRH
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BU of 8xrh by Molmil
The crystal structure of AsfvTopII ATPase domain in complex with AMPPNP
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA topoisomerase 2, MAGNESIUM ION, ...
Authors:Yang, J, Gan, J.H.
Deposit date:2024-01-07
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:The crystal structure of AsfvTopII ATPase domain in complex with AMPPNP
Nat Commun, 2024
8XRG
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BU of 8xrg by Molmil
The crystal structure of AsfvTopII ATPase domain in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA topoisomerase 2, MAGNESIUM ION, ...
Authors:Yang, J, Gan, J.H.
Deposit date:2024-01-07
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:The crystal structure of AsfvTopII ATPase domain in complex with ADP
Nat Commun, 2024
8XRI
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BU of 8xri by Molmil
The crystal structure of AsfvTopII in complex with both G-DNA and T-DNA
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (56-MER), DNA topoisomerase 2, ...
Authors:Yang, J, Gan, J.H.
Deposit date:2024-01-07
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:The crystal structure of AsfvTopII in complex with both G-DNA and T-DNA
Nat Commun, 2024
8XRF
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BU of 8xrf by Molmil
The crystal structure of AsfvTopII in complex with G-DNA
Descriptor: DNA (52-MER), DNA topoisomerase 2, MAGNESIUM ION
Authors:Yang, J, Gan, J.H.
Deposit date:2024-01-07
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:The crystal structure of AsfvTopII in complex with G-DNA
Nat Commun, 2024
6JHJ
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BU of 6jhj by Molmil
Structure of Marine bacterial laminarinase mutant-E135A
Descriptor: CALCIUM ION, LamCAT
Authors:Yang, J, Xu, Y, Miyakawa, T, Tanokura, M, Long, L.
Deposit date:2019-02-18
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Molecular Basis for Substrate Recognition and Catalysis by a Marine Bacterial Laminarinase.
Appl.Environ.Microbiol., 86, 2020
6JH5
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BU of 6jh5 by Molmil
Structure of Marine bacterial laminarinase
Descriptor: CALCIUM ION, LamCAT
Authors:Yang, J, Xu, Y, Miyakawa, T, Ru, L, Tanokura, M, Long, L.
Deposit date:2019-02-17
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Molecular Basis for Substrate Recognition and Catalysis by a Marine Bacterial Laminarinase.
Appl.Environ.Microbiol., 86, 2020

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