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PDB: 603 results

5GRN
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BU of 5grn by Molmil
Crystal structure of PDGFRA in Complex with WQ-C-159
Descriptor: CHLORIDE ION, N-[2-(dimethylamino)ethyl]-N-[[4-[[4-methyl-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]carbamoyl]phenyl]methyl]pyridine-3-carboxamide, Platelet-derived growth factor receptor alpha
Authors:Yan, X.E, Yun, C.H.
Deposit date:2016-08-11
Release date:2017-08-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal Structure of PDGFRA in Complex with WQ-C-159
To Be Published
5OPW
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BU of 5opw by Molmil
Crystal structure of the GroEL mutant A109C
Descriptor: 60 kDa chaperonin
Authors:Yan, X, Shi, Q, Bracher, A, Milicic, G, Singh, A.K, Hartl, F.U, Hayer-Hartl, M.
Deposit date:2017-08-10
Release date:2018-01-10
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:GroEL Ring Separation and Exchange in the Chaperonin Reaction.
Cell, 172, 2018
5GMP
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BU of 5gmp by Molmil
Crystal structure of EGFR 696-1022 T790M in complex with XTF-262
Descriptor: Epidermal growth factor receptor, N-[3-[2-[[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino]-5-methyl-7-oxidanylidene-pyrido[2,3-d]pyrimidin-8-yl]phenyl]prop-2-enamide
Authors:Yan, X.E, Yun, C.H.
Deposit date:2016-07-14
Release date:2017-06-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.797 Å)
Cite:A structure-guided optimization of pyrido[2,3-d]pyrimidin-7-ones as selective inhibitors of EGFR(L858R/T790M) mutant with improved pharmacokinetic properties.
Eur J Med Chem, 126, 2017
5GNK
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BU of 5gnk by Molmil
Crystal structure of EGFR 696-988 T790M in complex with LXX-6-34
Descriptor: 1,2-ETHANEDIOL, 1-[(3R)-3-[4-azanyl-3-[3-chloranyl-4-[(1-methylimidazol-2-yl)methoxy]phenyl]pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]prop-2-en-1-one, CHLORIDE ION, ...
Authors:Yan, X.E, Yun, C.H.
Deposit date:2016-07-21
Release date:2017-04-05
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.796 Å)
Cite:Discovery of (R)-1-(3-(4-Amino-3-(3-chloro-4-(pyridin-2-ylmethoxy)phenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl)piperidin-1-yl)prop-2-en-1-one (CHMFL-EGFR-202) as a Novel Irreversible EGFR Mutant Kinase Inhibitor with a Distinct Binding Mode.
J. Med. Chem., 60, 2017
5OPX
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BU of 5opx by Molmil
Crystal structure of the GroEL mutant A109C in complex with GroES and ADP BeF2
Descriptor: 10 kDa chaperonin, 60 kDa chaperonin, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Yan, X, Shi, Q, Bracher, A, Milicic, G, Singh, A.K, Hartl, F.U, Hayer-Hartl, M.
Deposit date:2017-08-10
Release date:2018-01-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.64 Å)
Cite:GroEL Ring Separation and Exchange in the Chaperonin Reaction.
Cell, 172, 2018
5Y4S
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BU of 5y4s by Molmil
Structure of a methyltransferase complex
Descriptor: Chemotaxis protein methyltransferase 1
Authors:Yan, X, Xin, L, Tan, Y.J, Jin, S, Liang, Z.X, Gao, Y.G.
Deposit date:2017-08-04
Release date:2017-11-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.405 Å)
Cite:Structural analyses unravel the molecular mechanism of cyclic di-GMP regulation of bacterial chemotaxis via a PilZ adaptor protein.
J. Biol. Chem., 293, 2018
5Y4R
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BU of 5y4r by Molmil
Structure of a methyltransferase complex
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Chemotaxis protein methyltransferase 1, Cyclic diguanosine monophosphate-binding protein PA4608, ...
Authors:Yan, X, Xin, L, Tan, Y.J, Jin, S, Liang, Z.X, Gao, Y.G.
Deposit date:2017-08-04
Release date:2017-11-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.298 Å)
Cite:Structural analyses unravel the molecular mechanism of cyclic di-GMP regulation of bacterial chemotaxis via a PilZ adaptor protein.
J. Biol. Chem., 293, 2018
5XDL
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BU of 5xdl by Molmil
Crystal structure of EGFR 696-1022 L858R in complex with CO-1686
Descriptor: Epidermal growth factor receptor, N-[3-[[2-[[4-(4-ethanoylpiperazin-1-yl)-2-methoxy-phenyl]amino]-5-(trifluoromethyl)pyrimidin-4-yl]amino]phenyl]prop-2-enamide
Authors:Yan, X.E, Zhu, S.J, Yun, C.H.
Deposit date:2017-03-28
Release date:2017-12-13
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of mutant-selectivity and drug-resistance related to CO-1686.
Oncotarget, 8, 2017
9JJ7
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BU of 9jj7 by Molmil
The crystal structure of SARS-CoV-2 NSP5 in complex with eIF4G2
Descriptor: 3C-like proteinase nsp5, Eukaryotic translation initiation factor 4 gamma 2
Authors:Yan, X, Jin, Z, Wang, Y, Zhang, J.
Deposit date:2024-09-13
Release date:2025-01-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Coronavirus NSP5 is an Evolutionarily Conserved Inhibitor of Host Translation
To Be Published
9J9I
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BU of 9j9i by Molmil
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNA
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Yan, X.F, Gao, Y.G.
Deposit date:2024-08-22
Release date:2025-06-04
Method:ELECTRON MICROSCOPY (2.46 Å)
Cite:Antimalarial drug artemisinin stabilizes PfRACK1 binding to the ribosome
Structure, 2025
9J9H
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BU of 9j9h by Molmil
High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNA
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Yan, X.F, Gao, Y.G.
Deposit date:2024-08-22
Release date:2025-06-04
Method:ELECTRON MICROSCOPY (2.45 Å)
Cite:Antimalarial drug artemisinin stabilizes PfRACK1 binding to the ribosome
Structure, 2025
7YG4
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BU of 7yg4 by Molmil
Structure of WTAP-VIRMA in the m6A writer complex
Descriptor: Pre-mRNA-splicing regulator WTAP, Protein virilizer homolog
Authors:Yan, X.H, Guan, Z.Y, Tang, C, Yin, P.
Deposit date:2022-07-11
Release date:2022-11-23
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:AI-empowered integrative structural characterization of m 6 A methyltransferase complex.
Cell Res., 32, 2022
5K5X
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BU of 5k5x by Molmil
Crystal structure of human PDGFRA
Descriptor: Platelet-derived growth factor receptor alpha, SULFATE ION
Authors:Yan, X.E, Liang, L, Yun, C.H.
Deposit date:2016-05-24
Release date:2016-08-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.168 Å)
Cite:Structural and biochemical studies of the PDGFRA kinase domain
Biochem.Biophys.Res.Commun., 477, 2016
8YSB
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BU of 8ysb by Molmil
Crystal structure of DynA1, a putative monoxygenase from Mivromonospora chersina.
Descriptor: Predicted ester cyclase
Authors:Yan, X.F, Huang, H.W, Gao, Y.G, Liang, Z.X.
Deposit date:2024-03-22
Release date:2024-09-04
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:An Enzymatic Oxidation Cascade Converts delta-Thiolactone Anthracene to Anthraquinone in the Biosynthesis of Anthraquinone-Fused Enediynes.
Jacs Au, 4, 2024
7YFJ
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BU of 7yfj by Molmil
Crystal structure of human WTAP
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Pre-mRNA-splicing regulator WTAP
Authors:Yan, X.H, Guan, Z.Y, Tang, C, Yin, P.
Deposit date:2022-07-08
Release date:2023-01-25
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:AI-empowered integrative structural characterization of m 6 A methyltransferase complex.
Cell Res., 32, 2022
5GTZ
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BU of 5gtz by Molmil
Crystal structure of EGFR 696-1022 T790M in complex with JTS-1-39
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Epidermal growth factor receptor, ...
Authors:Yan, X.E, Yun, C.H.
Deposit date:2016-08-24
Release date:2017-09-06
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.999 Å)
Cite:Crystal structure of EGFR 696-1022 T790M in complex with JTS-1-39
To Be Published
5XDK
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BU of 5xdk by Molmil
Crystal structure of EGFR 696-1022 T790M in complex with CO-1686
Descriptor: Epidermal growth factor receptor, N-[3-[[2-[[4-(4-ethanoylpiperazin-1-yl)-2-methoxy-phenyl]amino]-5-(trifluoromethyl)pyrimidin-4-yl]amino]phenyl]prop-2-enamide
Authors:Yan, X.E, Yun, C.H.
Deposit date:2017-03-28
Release date:2017-12-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.346 Å)
Cite:Structural basis of mutant-selectivity and drug-resistance related to CO-1686.
Oncotarget, 8, 2017
5GTY
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BU of 5gty by Molmil
Crystal structure of EGFR 696-1022 T790M in complex with LXX-6-26
Descriptor: 1,2-ETHANEDIOL, 1-[(3R)-3-[4-azanyl-3-[3-chloranyl-4-[(6-methylpyridin-2-yl)methoxy]phenyl]pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]prop-2-en-1-one, Epidermal growth factor receptor
Authors:Yan, X.E, Yun, C.H.
Deposit date:2016-08-23
Release date:2017-09-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Discovery and characterization of a novel irreversible EGFR mutants selective and potent kinase inhibitor CHMFL-EGFR-26 with a distinct binding mode.
Oncotarget, 8, 2017
6A32
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BU of 6a32 by Molmil
Crystal structure of PDGFRA kinase domain mutant T674I
Descriptor: Platelet-derived growth factor receptor alpha
Authors:Yan, X.E, Liang, L, Yun, C.H.
Deposit date:2018-06-14
Release date:2019-06-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structure of PDGFRA kinase domain mutant T674I
To Be Published
2QHA
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BU of 2qha by Molmil
From Structure to Function: Insights into the Catalytic Substrate Specificity and Thermostability Displayed by Bacillus subtilis mannanase BCman
Descriptor: Beta-1,4-mannanase, GLYCEROL, ZINC ION
Authors:Yan, X.X, Liang, D.C.
Deposit date:2007-07-01
Release date:2008-05-20
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:From Structure to Function: Insights into the Catalytic Substrate Specificity and Thermostability Displayed by Bacillus subtilis Mannanase BCman
J.Mol.Biol., 379, 2008
5YU9
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BU of 5yu9 by Molmil
Crystal structure of EGFR 696-1022 T790M in complex with Ibrutinib
Descriptor: 1-{(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}prop-2-en-1-one, CHLORIDE ION, Epidermal growth factor receptor
Authors:Yan, X.E, Yun, C.H.
Deposit date:2017-11-21
Release date:2017-12-27
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Ibrutinib targets mutant-EGFR kinase with a distinct binding conformation.
Oncotarget, 7, 2016
7JYA
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BU of 7jya by Molmil
Crystal structure of E3 ligase in complex with peptide
Descriptor: ASN-ARG-ARG-ARG-ARG-TRP-ARG-GLU-ARG-GLN-ARG, Protein fem-1 homolog C, UNKNOWN ATOM OR ION
Authors:Yan, X, Dong, A, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J.R, Dong, C, Structural Genomics Consortium (SGC)
Deposit date:2020-08-30
Release date:2020-10-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Molecular basis for ubiquitin ligase CRL2 FEM1C -mediated recognition of C-degron.
Nat.Chem.Biol., 17, 2021
7VBW
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BU of 7vbw by Molmil
Structure of the GTP-bound AAA+ ATPase domain of the transcriptional regulator GtrR in Burkholderia cenocepacia
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Sigma-54 dependent trancsriptional regulator
Authors:Yan, X.F, Yong, Y, Gao, Y.G.
Deposit date:2021-09-01
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural analyses of the AAA+ ATPase domain of the transcriptional regulator GtrR in the BDSF quorum-sensing system in Burkholderia cenocepacia.
Febs Lett., 596, 2022
7VBS
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BU of 7vbs by Molmil
Structure of the AAA+ ATPase domain of the transcriptional regulator GtrR in Burkholderia cenocepacia
Descriptor: PHOSPHATE ION, Sigma-54 dependent trancsriptional regulator
Authors:Yan, X.F, Yong, Y, Gao, Y.G.
Deposit date:2021-09-01
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.998 Å)
Cite:Structural analyses of the AAA+ ATPase domain of the transcriptional regulator GtrR in the BDSF quorum-sensing system in Burkholderia cenocepacia.
Febs Lett., 596, 2022
8H75
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BU of 8h75 by Molmil
FGFR2 in complex with YJ001
Descriptor: CHLORIDE ION, Fibroblast growth factor receptor 2, Tinengotinib
Authors:Yan, X.E, Yun, C.H.
Deposit date:2022-10-19
Release date:2023-10-25
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.75 Å)
Cite:FGFR2 in complex with YJ001
To Be Published

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