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PDB: 12895 results

6JE9
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BU of 6je9 by Molmil
Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers
Descriptor: AcrIIC3, CRISPR-associated endonuclease Cas9, sgRNA
Authors:Sun, W, Yang, J, Cheng, Z, Liu, C, Wang, K, Huang, X, Wang, Y.
Deposit date:2019-02-04
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.46 Å)
Cite:Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States.
Mol.Cell, 76, 2019
6J44
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BU of 6j44 by Molmil
Crystal structure of the redefined DNA-binding domain of human XPA
Descriptor: DNA repair protein complementing XP-A cells, ZINC ION
Authors:Lian, F.M, Yang, X, Yang, W, Jiang, Y.L, Qian, C.
Deposit date:2019-01-07
Release date:2019-05-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structural characterization of the redefined DNA-binding domain of human XPA.
Biochem.Biophys.Res.Commun., 514, 2019
6J57
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BU of 6j57 by Molmil
Crystal structure of fumarylpyruvate hydrolase from Corynebacterium glutamicum
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, Predicted 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase, ...
Authors:Hong, H, Seo, H, Kim, K.-J, Park, W.
Deposit date:2019-01-10
Release date:2019-12-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Sequence, structure and function-based classification of the broadly conserved FAH superfamily reveals two distinct fumarylpyruvate hydrolase subfamilies.
Environ.Microbiol., 22, 2020
6JAV
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BU of 6jav by Molmil
Crystal structure of Ostrinia furnacalis Group II chitinase catalytic domain 1 in complex with a piperidine-thienopyridine derivative
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-{[(4-chlorophenyl)methyl]sulfanyl}-7-methyl-N-(prop-2-en-1-yl)-7,8-dihydropyrido[4',3':4,5]thieno[2,3-d]pyrimidin-4-amine, Group II chitinase
Authors:Chen, W, Zhou, Y, Yang, Q.
Deposit date:2019-01-25
Release date:2019-05-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.437 Å)
Cite:Structural dissection reveals a general mechanistic principle for group II chitinase (ChtII) inhibition.
J.Biol.Chem., 294, 2019
5X0R
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BU of 5x0r by Molmil
Crystal Structure of PXR LBD Complexed with SJB7
Descriptor: 4-[(4-tert-butylphenyl)sulfonyl]-1-(2,4-dimethoxy-5-methylphenyl)-5-methyl-1H-1,2,3-triazole, Nuclear receptor coactivator 1, Nuclear receptor subfamily 1 group I member 2
Authors:Lv, L, Lin, W, Chai, S.C, Zhang, Q, Chen, T.
Deposit date:2017-01-23
Release date:2017-10-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.665 Å)
Cite:SPA70 is a potent antagonist of human pregnane X receptor.
Nat Commun, 8, 2017
5W5F
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BU of 5w5f by Molmil
Cryo-EM structure of the T4 tail tube
Descriptor: Tail tube protein gp19
Authors:Zheng, W, Wang, F, Taylor, N.M, Guerrero-Ferreira, R.C, Leiman, P.G, Egelman, E.H.
Deposit date:2017-06-15
Release date:2017-08-16
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Refined Cryo-EM Structure of the T4 Tail Tube: Exploring the Lowest Dose Limit.
Structure, 25, 2017
5VSO
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BU of 5vso by Molmil
NMR structure of Ydj1 J-domain, a cytosolic Hsp40 from Saccharomyces cerevisiae
Descriptor: Yeast dnaJ protein 1
Authors:Ciesielski, S.J, Tonelli, M, Lee, W, Cornilescu, G, Markley, J.L, Schilke, B.A, Ziegelhoffer, T, Craig, E.A.
Deposit date:2017-05-12
Release date:2017-11-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Broadening the functionality of a J-protein/Hsp70 molecular chaperone system.
PLoS Genet., 13, 2017
6GX5
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BU of 6gx5 by Molmil
Narrow Pick Filament from Pick's disease brain
Descriptor: Microtubule-associated protein tau
Authors:Falcon, B, Zhang, W, Murzin, A.G, Murshudov, G, Garringer, H.J, Vidal, R, Crowther, R.A, Ghetti, B, Scheres, S.H.W, Goedert, M.
Deposit date:2018-06-26
Release date:2018-09-12
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures of filaments from Pick's disease reveal a novel tau protein fold.
Nature, 561, 2018
5YI8
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BU of 5yi8 by Molmil
Crystal structure of drosophila Numb PTB domain and Pon peptide complex
Descriptor: FORMIC ACID, Pon peptide from Partner of numb, Protein numb
Authors:Shan, Z, Wen, W.
Deposit date:2017-10-03
Release date:2018-04-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Basal condensation of Numb and Pon complex via phase transition during Drosophila neuroblast asymmetric division.
Nat Commun, 9, 2018
5YQA
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BU of 5yqa by Molmil
The crystal structure of CYP199A4 binding with 4-n-Propyl benzoic acid
Descriptor: 4-propylbenzoic acid, CHLORIDE ION, Cytochrome P450, ...
Authors:Zhou, W, Zhang, T, Qiao, R, Bell, S, Coleman, T.
Deposit date:2017-11-06
Release date:2019-02-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:The crystal structure of CYP199A4 binding with 4-n-Propyl benzoic acid
To Be Published
7DW5
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BU of 7dw5 by Molmil
Crystal structure of DUX4 HD1-HD2 domain complexed with ERG sites
Descriptor: BROMIDE ION, DNA (5'-D(P*CP*GP*AP*CP*TP*TP*GP*AP*TP*GP*AP*GP*AP*TP*TP*AP*GP*AP*CP*TP*G)-3'), Double homeobox protein 4-like protein 2
Authors:Zhang, H, Cheng, N, Li, Z, Zhang, W, Dong, X, Huang, J, Meng, G.
Deposit date:2021-01-15
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:DNA crosslinking and recombination-activating genes 1/2 (RAG1/2) are required for oncogenic splicing in acute lymphoblastic leukemia.
Cancer Commun (Lond), 41, 2021
5YP4
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BU of 5yp4 by Molmil
Crystal structure of dipeptidyl peptidase IV (DPP IV) with Lys-Pro from Pseudoxanthomonas mexicana WO24
Descriptor: Dipeptidyl aminopeptidase 4, GLYCEROL, LYSINE, ...
Authors:Roppongi, S, Suzuki, Y, Tateoka, C, Fuimoto, M, Morisawa, S, Iizuka, I, Nakamura, A, Honma, N, Shida, Y, Ogasawara, W, Tanaka, N, Sakamoto, Y, Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
6JBO
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BU of 6jbo by Molmil
Crystal structure of EfeO-like protein Algp7 containing samarium ion
Descriptor: 1,2-ETHANEDIOL, Alginate-binding protein, CITRIC ACID
Authors:Okumura, K, Takase, R, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2019-01-26
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Rare metal binding by a cell-surface component of bacterial EfeUOB iron importer
To Be Published
7E2Q
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BU of 7e2q by Molmil
Crystal structure of Mycoplasma pneumoniae Enolase
Descriptor: Enolase, SULFATE ION
Authors:Chen, R, Zhang, S, Gan, R, Wang, W, Ran, T, Xiong, Q, Shao, G, Feng, Z.
Deposit date:2021-02-07
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Evidence for the Rapid and Divergent Evolution of Mycoplasmas: Structural and Phylogenetic Analysis of Enolases.
Front Mol Biosci, 8, 2022
6J6V
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BU of 6j6v by Molmil
Crystal structure of heat shock factor 4-DBD
Descriptor: Heat shock factor protein 4, NITRATE ION, SODIUM ION
Authors:Guo, L, Xiao, Z.Y, Wang, S, Liu, W.
Deposit date:2019-01-16
Release date:2020-01-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structure of heat shock factor 4-DBD at 1.20 Angstroms resolution.
To Be Published
5Y29
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BU of 5y29 by Molmil
Crystal structure of Ostrinia furnacalis Group II chitinase catalytic domain 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, insect group II chitinase
Authors:Chen, W, Qu, M.B, Zhou, Y, Yang, Q.
Deposit date:2017-07-24
Release date:2018-01-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of group II chitinase (ChtII) catalysis completes the puzzle of chitin hydrolysis in insects
J. Biol. Chem., 293, 2018
6J5Y
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BU of 6j5y by Molmil
Crystal structure of fumarylpyruvate hydrolase from Pseudomonas aeruginosa in complex with Mn2+ and pyruvate
Descriptor: FAA hydrolase family protein, MANGANESE (II) ION, PYRUVIC ACID
Authors:Hong, H, Seo, H, Kim, K.-J, Park, W.
Deposit date:2019-01-12
Release date:2019-12-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Sequence, structure and function-based classification of the broadly conserved FAH superfamily reveals two distinct fumarylpyruvate hydrolase subfamilies.
Environ.Microbiol., 22, 2020
5VRQ
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BU of 5vrq by Molmil
Crystal structure of Legionella pneumophila effector AnkC
Descriptor: Ankyrin repeat-containing protein
Authors:Kozlov, G, Wong, K, Wang, W, Skubak, P, Munoz-Escobar, J, Liu, Y, Pannu, N.S, Gehring, K, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
Deposit date:2017-05-11
Release date:2017-11-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.205 Å)
Cite:Ankyrin repeats as a dimerization module.
Biochem. Biophys. Res. Commun., 495, 2018
5VZY
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BU of 5vzy by Molmil
Crystal structure of crenezumab Fab in complex with Abeta
Descriptor: Amyloid beta A4 protein, Crenezumab Fab heavy chain,Immunoglobulin gamma-1 heavy chain, Crenezumab Fab light chain,Immunoblobulin light chain
Authors:Ultsch, M, Wang, W.
Deposit date:2017-05-29
Release date:2017-08-09
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structure of Crenezumab Complex with Abeta Shows Loss of beta-Hairpin.
Sci Rep, 6, 2016
5W51
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BU of 5w51 by Molmil
Pol II elongation complex with an N6-methyladenine-containing template and a matched UMPNPP
Descriptor: 14mer non-template DNA, 29mer template DNA, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, ...
Authors:Wang, W, Wang, D.
Deposit date:2017-06-13
Release date:2018-06-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.404 Å)
Cite:Epigenetic DNA Modification N6-Methyladenine Causes Site-Specific RNA Polymerase II Transcriptional Pausing.
J.Am.Chem.Soc., 139, 2017
6GQQ
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BU of 6gqq by Molmil
Crystal structure of human KDR (VEGFR2) kinase domain in complex with AZD3229-analogue (compound 35)
Descriptor: Vascular endothelial growth factor receptor 2, ~{N}-[4-(6,7-dimethoxyquinazolin-4-yl)oxyphenyl]-2-(4-propan-2-yl-1,2,3-triazol-1-yl)ethanamide
Authors:Schimpl, M, Hardy, C.J, Ogg, D.J, Overman, R.C, Packer, M.J, Kettle, J.G, Anjum, R, Barry, E, Bhavsar, D, Brown, C, Campbell, A, Goldberg, K, Grondine, M, Guichard, S, Hunt, T, Jones, O, Li, X, Moleva, O, Pearson, S, Shao, W, Smith, A, Smith, J, Stead, D, Stokes, S, Tucker, M, Ye, Y.
Deposit date:2018-06-07
Release date:2018-09-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Discovery of N-(4-{[5-Fluoro-7-(2-methoxyethoxy)quinazolin-4-yl]amino}phenyl)-2-[4-(propan-2-yl)-1 H-1,2,3-triazol-1-yl]acetamide (AZD3229), a Potent Pan-KIT Mutant Inhibitor for the Treatment of Gastrointestinal Stromal Tumors.
J. Med. Chem., 61, 2018
6GXF
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BU of 6gxf by Molmil
The hit-and-return system enables efficient time-resolved serial synchrotron crystallography: RADDAM1
Descriptor: Fluoroacetate dehalogenase
Authors:Schulz, E.C, Mehrabi, P, Mueller-Werkmeister, H, Tellkamp, F, Stuart, W, Persch, E, De Gasparo, R, Diederich, F, Pai, E.F, Miller, R.J.D.
Deposit date:2018-06-27
Release date:2018-10-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The hit-and-return system enables efficient time-resolved serial synchrotron crystallography.
Nat. Methods, 15, 2018
5WT1
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BU of 5wt1 by Molmil
Pyrococcus abyssi methyltransferase PaTrm5a bound by SAH and cognate tRNA
Descriptor: RNA (76-MER), S-ADENOSYL-L-HOMOCYSTEINE, tRNA (guanine(37)-N1)-methyltransferase Trm5a
Authors:Xie, W, Wang, C, Jia, Q.
Deposit date:2016-12-09
Release date:2017-12-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.598 Å)
Cite:Structural insight into the methyltransfer mechanism of the bifunctional Trm5.
Sci Adv, 3, 2017
5WZZ
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BU of 5wzz by Molmil
The SIAH E3 ubiquitin ligases promote Wnt/ beta-catenin signaling through mediating Wnt-induced Axin degradation
Descriptor: Axin-1, E3 ubiquitin-protein ligase SIAH1, ZINC ION
Authors:Ji, L, Jiang, B, Jiang, X, Charlat, O, Chen, A, Mickanin, C, Bauer, A, Xu, W, Yan, X.-X, Cong, F.
Deposit date:2017-01-19
Release date:2017-08-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:The SIAH E3 ubiquitin ligases promote Wnt/ beta-catenin signaling through mediating Wnt-induced Axin degradation
Genes Dev., 31, 2017
6HE4
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BU of 6he4 by Molmil
AAA-ATPase ring of PAN-proteasomes
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Majumder, P, Rudack, T, Beck, F, Baumeister, W.
Deposit date:2018-08-20
Release date:2018-12-26
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.85 Å)
Cite:Cryo-EM structures of the archaeal PAN-proteasome reveal an around-the-ring ATPase cycle.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019

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PDB entries from 2024-07-10

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