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PDB: 12479 results

6UG0
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BU of 6ug0 by Molmil
N2-bound Nitrogenase MoFe-protein from Azotobacter vinelandii
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
Authors:Kang, W, Hu, Y, Ribbe, M.W.
Deposit date:2019-09-25
Release date:2020-06-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural evidence for a dynamic metallocofactor during N2reduction by Mo-nitrogenase.
Science, 368, 2020
7AD8
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BU of 7ad8 by Molmil
Core TFIIH-XPA-DNA complex with modelled p62 subunit
Descriptor: DNA (49-MER), DNA repair protein complementing XP-A cells, General transcription and DNA repair factor IIH helicase subunit XPB, ...
Authors:Koelmel, W, Kuper, J, Kisker, C.
Deposit date:2020-09-14
Release date:2021-07-28
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The TFIIH subunits p44/p62 act as a damage sensor during nucleotide excision repair.
Nucleic Acids Res., 48, 2020
6UK5
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BU of 6uk5 by Molmil
Structure of SAM bound CalS10, an amino pentose methyltransferase from Micromonospora echinaspora involved in calicheamicin biosynthesis
Descriptor: ACETATE ION, CalS10, DI(HYDROXYETHYL)ETHER, ...
Authors:Alvarado, S.K, Miller, M.D, Xu, W, Wang, Z, Van Lanen, S.G, Thorson, J.S, Phillips Jr, G.N.
Deposit date:2019-10-04
Release date:2020-10-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of SAM bound CalS10, an amino pentose methyltransferase from Micromonospora echinaspora involved in calicheamicin biosynthesis
To Be Published
6U60
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Crystal structure of prephenate dehydrogenase tyrA from Bacillus anthracis in complex with NAD and L-tyrosine
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION, Prephenate dehydrogenase, ...
Authors:Shabalin, I.G, Hou, J, Kutner, J, Grimshaw, S, Christendat, D, Anderson, W.F, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-08-28
Release date:2019-09-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and biochemical analysis of Bacillus anthracis prephenate dehydrogenase reveals an unusual mode of inhibition by tyrosine via the ACT domain.
Febs J., 287, 2020
6U6J
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RNA-monomer complex containing pyrophosphate linkage
Descriptor: 5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G*(DPG))-3')
Authors:Zhang, W, Szostak, J.W, Giurgiu, C, Wright, T.
Deposit date:2019-08-29
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Prebiotically Plausible "Patching" of RNA Backbone Cleavage through a 3'-5' Pyrophosphate Linkage.
J.Am.Chem.Soc., 141, 2019
6U8F
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RNA hairpin, bound with TNA monomer
Descriptor: 2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one, RNA (5'-R(*CP*UP*GP*CP*UP*GP*GP*CP*UP*AP*AP*GP*GP*CP*AP*UP*GP*AP*AP*AP*GP*U)-3'), RNA (5'-R(P*CP*UP*AP*UP*GP*CP*CP*UP*GP*CP*UP*G)-3')
Authors:Szostak, J.W, Zhang, W.
Deposit date:2019-09-04
Release date:2020-12-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Structural interpretation of the effects of threo-nucleotides on nonenzymatic template-directed polymerization.
Nucleic Acids Res., 49, 2021
6U5G
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BU of 6u5g by Molmil
MicroED structure of a FIB-milled CypA Crystal
Descriptor: Peptidyl-prolyl cis-trans isomerase A
Authors:Wolff, A.M, Martynowycz, M.W, Zhao, W, Gonen, T, Fraser, J.S, Thompson, M.C.
Deposit date:2019-08-27
Release date:2020-01-29
Last modified:2023-10-11
Method:ELECTRON CRYSTALLOGRAPHY (2.5 Å)
Cite:Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals
Iucrj, 7, 2020
6U7Y
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BU of 6u7y by Molmil
RNA hairpin structure containing one TNA nucleotide as template
Descriptor: CYTIDINE-5'-MONOPHOSPHATE, RNA (5'-R(*CP*UP*AP*UP*GP*CP*CP*UP*GP*CP*UP*G)-3'), RNA (5'-R(*CP*UP*GP*CP*UP*GP*GP*CP*UP*AP*AP*GP*GP*(TG)P*CP*CP*GP*AP*AP*AP*GP*G)-3')
Authors:Szostak, J.W, Zhang, W.
Deposit date:2019-09-03
Release date:2020-12-09
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural interpretation of the effects of threo-nucleotides on nonenzymatic template-directed polymerization.
Nucleic Acids Res., 49, 2021
6UE5
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BU of 6ue5 by Molmil
Crystal structure of full-length human DCAF15-DDB1-deltaPBP-DDA1-RBM39 in complex with 4-(aminomethyl)-N-(3-cyano-4-methyl-1H-indol-7-yl)benzenesulfonamide
Descriptor: 4-(aminomethyl)-N-(3-cyano-4-methyl-1H-indol-7-yl)benzene-1-sulfonamide, DDB1- and CUL4-associated factor 15, DET1- and DDB1-associated protein 1, ...
Authors:Knapp, M.S, Shu, W, Xie, L, Bussiere, D.E.
Deposit date:2019-09-20
Release date:2019-12-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Structural basis of indisulam-mediated RBM39 recruitment to DCAF15 E3 ligase complex.
Nat.Chem.Biol., 16, 2020
6TUM
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BU of 6tum by Molmil
Crystal structure of glutathione s-transferase PA1623 from Pseudomonas aeruginosa PACS2 complexed with tartrate
Descriptor: D(-)-TARTARIC ACID, Glutathione S-transferase, L(+)-TARTARIC ACID
Authors:Feiler, C.G, Blankenfeldt, W.
Deposit date:2020-01-07
Release date:2020-09-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal structure of glutathione s-transferase PA1623 from Pseudomonas aeruginosa PACS2 complexed with tartrate
To Be Published
6UKT
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BU of 6ukt by Molmil
Cryo-EM structure of mammalian Ric-8A:Galpha(i):nanobody complex
Descriptor: Guanine nucleotide-binding protein G(i) subunit alpha-1, NB8109, NB8117, ...
Authors:Mou, T.C, Zhang, K, Johnston, J.D, Chiu, W, Sprang, S.R.
Deposit date:2019-10-05
Release date:2020-03-11
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Structure of the G protein chaperone and guanine nucleotide exchange factor Ric-8A bound to G alpha i1.
Nat Commun, 11, 2020
7AC9
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BU of 7ac9 by Molmil
Thrombin in complex with D-arginine (j77)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, D-ARGININE, DIMETHYL SULFOXIDE, ...
Authors:Scanlan, W, Heine, A, Klebe, G, Abazi, N.
Deposit date:2020-09-10
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.393 Å)
Cite:Thrombin in complex with D-arginine (j77)
To be published
6U9I
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BU of 6u9i by Molmil
Crystal structure of BvnE pinacolase from Penicillium brevicompactum
Descriptor: BvnE, DI(HYDROXYETHYL)ETHER, GLYCEROL
Authors:Ye, Y, Du, L, Zhang, X, Newmister, S.A, McCauley, M, Alegre-Requena, J.V, Zhang, W, Mu, S, Minami, A, Fraley, A.E, Adrover-Castellano, M.L, Carney, N, Shende, V.V, Oikawa, H, Kato, H, Tsukamoto, S, Paton, R.S, Williams, R.M, Sherman, D.H, Li, S.
Deposit date:2019-09-09
Release date:2020-09-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.777 Å)
Cite:Fungal-derived brevianamide assembly by a stereoselective semipinacolase.
Nat Catal, 3, 2020
6UBL
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BU of 6ubl by Molmil
Structure of DynF from the Dynemicin Biosynthesis Pathway of Micromonospora chersina
Descriptor: DynF, PALMITIC ACID
Authors:Kosgei, A.J, Miller, M.D, Xu, W, Bhardwaj, M, Van Lanen, S.G, Thorson, J.S, Phillips Jr, G.N.
Deposit date:2019-09-12
Release date:2020-09-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.499 Å)
Cite:The crystal structure of DynF from the dynemicin-biosynthesis pathway of Micromonospora chersina.
Acta Crystallogr.,Sect.F, 78, 2022
6UGH
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BU of 6ugh by Molmil
Cryo-EM structure of the apo form of human PRMT5:MEP50 complex at a resolution of 3.4 angstrom
Descriptor: Methylosome protein 50, Protein arginine N-methyltransferase 5
Authors:Zhou, W, Yadav, G.P, Jiang, Q.-X, Li, C.
Deposit date:2019-09-26
Release date:2020-12-09
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:A 3.4-angstrom cryo-EM structure of the apo form of hu-man PRMT5:MEP50 complex reveals sequential catalysis of symmetric methyl transfer
To Be Published
6ZTG
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BU of 6ztg by Molmil
Spor protein DedD
Descriptor: Cell division protein DedD
Authors:Pazos, M, Peters, K, Boes, A, Safaei, Y, Kenward, C, Caveney, N.A, Laguri, C, Breukink, E, Strynadka, N.C.J, Simorre, J.P, Terrak, M, Vollmer, W.
Deposit date:2020-07-20
Release date:2020-11-11
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:SPOR Proteins Are Required for Functionality of Class A Penicillin-Binding Proteins in Escherichia coli.
Mbio, 11, 2020
6UI6
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BU of 6ui6 by Molmil
HBV T=3 149C3A
Descriptor: Core protein
Authors:Wu, W, Watts, N.R, Cheng, N, Huang, R, Steven, A, Wingfield, P.T.
Deposit date:2019-09-30
Release date:2019-11-06
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Expression of quasi-equivalence and capsid dimorphism in the Hepadnaviridae.
Plos Comput.Biol., 16, 2020
7AHX
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BU of 7ahx by Molmil
HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND D-ASPARTATE TENOFOVIR WITH BOUND MANGANESE
Descriptor: D-Aspartate Tenofovir, DNA (5'-D(*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)*CP*GP*CP*CP*(DDG))-3'), DNA (5'-D(*TP*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*G)-3'), ...
Authors:Gu, W, Martinez, S.E, Nguyen, H, Xu, H, Herdewijn, P, de Jonghe, S, Das, K.
Deposit date:2020-09-25
Release date:2021-01-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Tenofovir-Amino Acid Conjugates Act as Polymerase Substrates-Implications for Avoiding Cellular Phosphorylation in the Discovery of Nucleotide Analogues.
J.Med.Chem., 64, 2021
6U5A
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BU of 6u5a by Molmil
Crystal structure of Equine Serum Albumin complex with 6-MNA
Descriptor: (6-methoxynaphthalen-2-yl)acetic acid, SULFATE ION, Serum albumin, ...
Authors:Czub, M.P, Handing, K.B, Venkataramany, B.S, Cymborowski, M.T, Shabalin, I.G, Satchell, K.J, Joachimiak, A, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-08-27
Release date:2019-09-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Albumin-Based Transport of Nonsteroidal Anti-Inflammatory Drugs in Mammalian Blood Plasma.
J.Med.Chem., 63, 2020
6U5Z
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BU of 6u5z by Molmil
Cryo-EM structure of E. coli LonA S679A
Descriptor: Lon protease
Authors:Botos, I, Lountos, G.T, Weimin, W, Wlodawer, A.
Deposit date:2019-08-28
Release date:2020-02-26
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structure of substrate-free E. coli Lon protease provides insights into the dynamics of Lon machinery
Curr Res Struct Biol, 1, 2020
7AQK
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BU of 7aqk by Molmil
Model of the actin filament Arp2/3 complex branch junction in cells
Descriptor: Actin, alpha skeletal muscle, ACTA1, ...
Authors:Faessler, F, Dimchev, G, Hodirnau, V.V, Wan, W, Schur, F.K.M.
Deposit date:2020-10-22
Release date:2020-12-02
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights into the branch junction.
Nat Commun, 11, 2020
7AII
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BU of 7aii by Molmil
HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND L-METHIONINE TENOFOVIR WITH BOUND MANGANESE
Descriptor: DNA (5'-D(*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(DDG))-3'), DNA (5'-D(P*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*G)-3'), Gag-Pol polyprotein, ...
Authors:Gu, W, Martinez, S.E, Nguyen, H, Xu, H, Herdewijn, P, de Jonghe, S, Das, K.
Deposit date:2020-09-27
Release date:2021-01-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Tenofovir-Amino Acid Conjugates Act as Polymerase Substrates-Implications for Avoiding Cellular Phosphorylation in the Discovery of Nucleotide Analogues.
J.Med.Chem., 64, 2021
7B1A
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BU of 7b1a by Molmil
Myosin-II-AA mutant motor domain
Descriptor: 1,2-ETHANEDIOL, ADP METAVANADATE, MAGNESIUM ION, ...
Authors:Ewert, W, Preller, M.
Deposit date:2020-11-24
Release date:2021-01-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Unraveling a Force-Generating Allosteric Pathway of Actomyosin Communication Associated with ADP and P i Release.
Int J Mol Sci, 22, 2020
6UJE
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BU of 6uje by Molmil
Crystal structure of the Clostridial cellulose synthase subunit Z (CcsZ) from Clostridioides difficile
Descriptor: CALCIUM ION, Endoglucanase
Authors:Scott, W, Lowrance, B, Anderson, A.C, Weadge, J.T.
Deposit date:2019-10-03
Release date:2020-10-14
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Identification of the Clostridial cellulose synthase and characterization of the cognate glycosyl hydrolase, CcsZ.
Plos One, 15, 2020
6UR2
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BU of 6ur2 by Molmil
DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template and primer containing an N3'-> P5' linkage
Descriptor: DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*(C42)P*G)-3'), DNA (5'-D(P*AP*CP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3'), DNA polymerase I
Authors:Zhang, W, Lelyveld, V.S, Szostak, J.W.
Deposit date:2019-10-21
Release date:2020-03-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Synthesis of phosphoramidate-linked DNA by a modified DNA polymerase.
Proc.Natl.Acad.Sci.USA, 117, 2020

222415

数据于2024-07-10公开中

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