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PDB: 25 results

4Z0W
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BU of 4z0w by Molmil
Peptaibol gichigamin isolated from Tolypocladium sup_5
Descriptor: PEPTAIBOL GICHIGAMIN
Authors:Du, L, Risinger, A.L, Mitchell, C.A, Stamps, B.W, Pan, N, King, J.B, Motley, J.L, Thomas, L.M, Yang, Z, Stevenson, B.S, Mooberry, S.L, Cichewicz, R.H.
Deposit date:2015-03-26
Release date:2016-03-30
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Peptaibol gichigamin isolated from Tolypocladium sup_5
TO BE PUBLISHED
4DC9
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BU of 4dc9 by Molmil
Hexameric ring of Methanococcus voltae RadA
Descriptor: DNA repair and recombination protein radA, NITRATE ION
Authors:Du, L, Luo, Y.
Deposit date:2012-01-17
Release date:2012-05-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of a hexameric form of RadA recombinase from Methanococcus voltae.
Acta Crystallogr.,Sect.F, 68, 2012
3DHV
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BU of 3dhv by Molmil
Crystal structure of DltA protein in complex with D-alanine adenylate
Descriptor: ADENOSINE MONOPHOSPHATE, D-ALANINE, D-alanine-poly(phosphoribitol) ligase
Authors:Du, L, He, Y, Luo, Y.
Deposit date:2008-06-18
Release date:2008-11-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and enantiomer selection by D-alanyl carrier protein ligase DltA from Bacillus cereus.
Biochemistry, 47, 2008
4PZP
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BU of 4pzp by Molmil
Substrate-free structure of D-alanine carrier protein ligase DltA from Bacillus cereus
Descriptor: D-alanine--poly(phosphoribitol) ligase subunit 1
Authors:Du, L, Atila, M, Luo, Y.
Deposit date:2014-03-31
Release date:2014-11-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Thiolation-enhanced substrate recognition by D-alanyl carrier protein ligase DltA from Bacillus cereus.
F1000Res, 3, 2014
4HYY
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BU of 4hyy by Molmil
Filament of octameric rings of DMC1 recombinase from Homo sapiens
Descriptor: Meiotic recombination protein DMC1/LIM15 homolog
Authors:Du, L, Luo, Y.
Deposit date:2012-11-14
Release date:2013-04-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Structure of a filament of stacked octamers of human DMC1 recombinase.
Acta Crystallogr.,Sect.F, 69, 2013
8FEC
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BU of 8fec by Molmil
Structure of J-PKAc chimera complexed with Aplithianine derivative
Descriptor: 6-[(6P)-6-(4-bromo-1-methyl-1H-imidazol-5-yl)-2,3-dihydro-4H-1,4-thiazin-4-yl]-7H-purine, DnaJ homolog subfamily B member 1,cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase inhibitor alpha
Authors:Du, L, Wilson, B.A.P, Li, N, Martinez Fiesco, J.A, Dalilian, M, Wang, D, Smith, E.A, Wamiru, A, Goncharova, E.I, Zhang, P, O'Keefe, B.R.
Deposit date:2022-12-06
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of J-PKAc chimera complexed with Aplithianine and derivatives
To Be Published
8FE2
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BU of 8fe2 by Molmil
Structure of J-PKAc chimera complexed with Aplithianine A
Descriptor: 6-[(6M)-6-(1-methyl-1H-imidazol-5-yl)-2,3-dihydro-4H-1,4-thiazin-4-yl]-9H-purine, DnaJ homolog subfamily B member 1, cAMP-dependent protein kinase catalytic subunit alpha, ...
Authors:Du, L, Wilson, B.A.P, Li, N, Dalilian, M, Wang, D, Martinez Fiesco, J.A, Smith, E.A, Wamiru, A, Goncharova, E.I, Zhang, P, O'Keefe, B.R.
Deposit date:2022-12-05
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Structures of J-PKAc chimera complexed with Aplithianine and derivatives
To Be Published
8FE5
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BU of 8fe5 by Molmil
Structure of J-PKAc chimera complexed with Aplithianine B
Descriptor: 6-[(6P)-6-(1-methyl-1H-imidazol-5-yl)-2,3-dihydro-4H-1,4-thiazin-4-yl]-7,9-dihydro-8H-purin-8-one, DnaJ homolog subfamily B member 1,cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase inhibitor alpha
Authors:Du, L, Wilson, B.A.P, Li, N, Martinez Fiesco, J.A, Dalilian, M, Wang, D, Smith, E.A, Wamiru, A, Goncharova, E.I, Zhang, P, O'Keefe, B.R.
Deposit date:2022-12-05
Release date:2023-10-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Discovery and Synthesis of a Naturally Derived Protein Kinase Inhibitor that Selectively Inhibits Distinct Classes of Serine/Threonine Kinases.
J.Nat.Prod., 86, 2023
4BU1
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BU of 4bu1 by Molmil
Crystal structure of Rad4 BRCT1,2 in complex with a Crb2 phosphopeptide
Descriptor: 1,2-ETHANEDIOL, DNA REPAIR PROTEIN RHP9, GLYCEROL, ...
Authors:Qu, M, Rappas, M, Wardlaw, C.P, Garcia, V, Carr, A.M, Oliver, A.W, Du, L.L, Pearl, L.H.
Deposit date:2013-06-19
Release date:2013-10-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Phosphorylation-Dependent Assembly and Coordination of the DNA Damage Checkpoint Apparatus by Rad4(Topbp1.).
Mol.Cell, 51, 2013
4BMD
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BU of 4bmd by Molmil
Crystal structure of S.pombe Rad4 BRCT3,4
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, S-M CHECKPOINT CONTROL PROTEIN RAD4
Authors:Meng, Q, Rappas, M, Wardlaw, C.P, Garcia, V, Carr, A.M, Oliver, A.W, Du, L.L, Pearl, L.H.
Deposit date:2013-05-07
Release date:2013-10-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Phosphorylation-Dependent Assembly and Coordination of the DNA Damage Checkpoint Apparatus by Rad4(Topbp1.).
Mol.Cell, 51, 2013
4BMC
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BU of 4bmc by Molmil
Crystal structure of s.pombe Rad4 BRCT1,2
Descriptor: CHLORIDE ION, S-M CHECKPOINT CONTROL PROTEIN RAD4
Authors:Meng, Q, Rappas, M, Wardlaw, C.P, Garcia, V, Carr, A.M, Oliver, A.W, Du, L.L, Pearl, L.H.
Deposit date:2013-05-07
Release date:2013-10-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.982 Å)
Cite:Phosphorylation-Dependent Assembly and Coordination of the DNA Damage Checkpoint Apparatus by Rad4(Topbp1.).
Mol.Cell, 51, 2013
4BU0
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BU of 4bu0 by Molmil
Crystal structure of Rad4 BRCT1,2 in complex with a Crb2 phosphopeptide
Descriptor: ACETATE ION, DNA REPAIR PROTEIN RHP9, GLYCEROL, ...
Authors:Qu, M, Rappas, M, Wardlaw, C.P, Garcia, V, Carr, A.M, Oliver, A.W, Du, L.L, Pearl, L.H.
Deposit date:2013-06-19
Release date:2013-10-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Phosphorylation-Dependent Assembly and Coordination of the DNA Damage Checkpoint Apparatus by Rad4(Topbp1.).
Mol.Cell, 51, 2013
3FCC
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BU of 3fcc by Molmil
CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, D-alanine--poly(phosphoribitol) ligase subunit 1, MAGNESIUM ION
Authors:Osman, K.T, Du, L, He, Y, Luo, Y.
Deposit date:2008-11-21
Release date:2009-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Crystal structure of Bacillus cereus D-alanyl carrier protein ligase (DltA) in complex with ATP.
J.Mol.Biol., 388, 2009
3FCE
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BU of 3fce by Molmil
Crystal Structure of Bacillus cereus D-alanyl Carrier Protein Ligase DltA in Complex with ATP: Implications for Adenylation Mechanism
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, D-alanine--poly(phosphoribitol) ligase subunit 1
Authors:Osman, K.T, Du, L, He, Y, Luo, Y.
Deposit date:2008-11-21
Release date:2009-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of Bacillus cereus D-alanyl carrier protein ligase (DltA) in complex with ATP.
J.Mol.Biol., 388, 2009
6U9I
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BU of 6u9i by Molmil
Crystal structure of BvnE pinacolase from Penicillium brevicompactum
Descriptor: BvnE, DI(HYDROXYETHYL)ETHER, GLYCEROL
Authors:Ye, Y, Du, L, Zhang, X, Newmister, S.A, McCauley, M, Alegre-Requena, J.V, Zhang, W, Mu, S, Minami, A, Fraley, A.E, Adrover-Castellano, M.L, Carney, N, Shende, V.V, Oikawa, H, Kato, H, Tsukamoto, S, Paton, R.S, Williams, R.M, Sherman, D.H, Li, S.
Deposit date:2019-09-09
Release date:2020-09-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.777 Å)
Cite:Fungal-derived brevianamide assembly by a stereoselective semipinacolase.
Nat Catal, 3, 2020
7CCF
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BU of 7ccf by Molmil
Mechanism insights on steroselective oxidation of phosphorylated ethylphenols with cytochrome P450 CreJ
Descriptor: (3-ethylphenyl) dihydrogen phosphate, Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
Authors:Dong, S, Du, L, Li, S.Y, Feng, Y.G.
Deposit date:2020-06-17
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for Selective Oxidation of Phosphorylated Ethylphenols by Cytochrome P450 Monooxygenase CreJ.
Appl.Environ.Microbiol., 87, 2021
5XJN
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BU of 5xjn by Molmil
cytochrome P450 CREJ in complex with (4-ethylphenyl) dihydrogen phosphate
Descriptor: (4-ethylphenyl) dihydrogen phosphate, Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
Authors:Dong, S, Du, L, Li, S, Feng, Y.
Deposit date:2017-05-03
Release date:2017-07-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Selective oxidation of aliphatic C-H bonds in alkylphenols by a chemomimetic biocatalytic system
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8JBC
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BU of 8jbc by Molmil
Crystal Structure of the Csm6 K137A mutant from Thermus thermophilus HB8 in its apo form
Descriptor: CRISPR system endoribonuclease Csm6, NICKEL (II) ION
Authors:Lin, Z, Du, L.
Deposit date:2023-05-08
Release date:2023-12-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Molecular mechanism of allosteric activation of the CRISPR ribonuclease Csm6 by cyclic tetra-adenylate.
Embo J., 43, 2024
8JBB
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BU of 8jbb by Molmil
Crystal Structure of the Csm6 from Thermus thermophilus HB8 in complex with A2>p
Descriptor: CRISPR system endoribonuclease Csm6, RNA (5'-R(*AP*(A23))-3')
Authors:Lin, Z, Du, L.
Deposit date:2023-05-08
Release date:2023-12-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Molecular mechanism of allosteric activation of the CRISPR ribonuclease Csm6 by cyclic tetra-adenylate.
Embo J., 43, 2024
8JH1
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BU of 8jh1 by Molmil
Crystal Structure of the Csm6 Y161A mutant from Thermus thermophilus HB8 in complex with cyclic-tetraadenylate (cA4)
Descriptor: CRISPR system endoribonuclease Csm6, RNA (5'-R(P*AP*AP*AP*A)-3')
Authors:Lin, Z, Du, L.
Deposit date:2023-05-22
Release date:2023-12-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Molecular mechanism of allosteric activation of the CRISPR ribonuclease Csm6 by cyclic tetra-adenylate.
Embo J., 43, 2024
6B7N
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BU of 6b7n by Molmil
Cryo-electron microscopy structure of porcine delta coronavirus spike protein in the pre-fusion state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Shang, J, Zheng, Y, Yang, Y, Liu, C, Geng, Q, Tai, W, Du, L, Zhou, Y, Zhang, W, Li, F.
Deposit date:2017-10-04
Release date:2017-10-25
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-Electron Microscopy Structure of Porcine Deltacoronavirus Spike Protein in the Prefusion State
J. Virol., 92, 2018
8HTW
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BU of 8htw by Molmil
Crystal Structure of the ring nuclease Sso2081 Y133F mutant from Saccharolobus solfataricus in its apo form
Descriptor: CRISPR system ring nuclease SSO2081
Authors:Lin, Z, Du, L, Luo, Z.
Deposit date:2022-12-21
Release date:2023-02-15
Last modified:2023-03-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular basis of stepwise cyclic tetra-adenylate cleavage by the type III CRISPR ring nuclease Crn1/Sso2081.
Nucleic Acids Res., 51, 2023
7YHL
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BU of 7yhl by Molmil
Crystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with free phosphate
Descriptor: CRISPR system ring nuclease SSO2081, PHOSPHATE ION
Authors:Lin, Z, Du, L, Luo, Z.
Deposit date:2022-07-13
Release date:2023-02-15
Last modified:2023-03-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis of stepwise cyclic tetra-adenylate cleavage by the type III CRISPR ring nuclease Crn1/Sso2081.
Nucleic Acids Res., 51, 2023
7YGH
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BU of 7ygh by Molmil
Crystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with cyclic-tetraadenylate (cA4)
Descriptor: CRISPR system ring nuclease SSO2081, RNA (5'-R(P*AP*AP*AP*A)-3')
Authors:Lin, Z, Du, L, Luo, Z.
Deposit date:2022-07-11
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Molecular basis of stepwise cyclic tetra-adenylate cleavage by the type III CRISPR ring nuclease Crn1/Sso2081.
Nucleic Acids Res., 51, 2023
7YGL
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BU of 7ygl by Molmil
Crystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with A4>p cleavage intermediate
Descriptor: CRISPR system ring nuclease SSO2081, RNA (5'-R(*AP*AP*AP*(A23))-3')
Authors:Lin, Z, Du, L, Luo, Z.
Deposit date:2022-07-11
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular basis of stepwise cyclic tetra-adenylate cleavage by the type III CRISPR ring nuclease Crn1/Sso2081.
Nucleic Acids Res., 51, 2023

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