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PDB: 227 results

8SJK
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BU of 8sjk by Molmil
Pembrolizumab Caffeine crystal
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ANTIBODY HEAVY CHAIN, ANTIBODY LIGHT CHAIN, ...
Authors:Larpent, P, Codan, L, Bothe, J.R, Stueber, D, Reichert, P, Fischmann, T, Su, Y, Pabit, S, Gupta, S, Iuzzolino, L, Cote, A.
Deposit date:2023-04-18
Release date:2024-04-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Small-Angle X-ray Scattering as a Powerful Tool for Phase and Crystallinity Assessment of Monoclonal Antibody Crystallites in Support of Batch Crystallization.
Mol Pharm., 21, 2024
4TXC
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Crystal Structure of DAPK1 kinase domain in complex with a small molecule inhibitor
Descriptor: 1,2-ETHANEDIOL, 4-(3-{3-[(R)-{[2-(dimethylamino)ethyl]amino}(hydroxy)methyl]phenyl}imidazo[1,2-b]pyridazin-6-yl)-2-methoxyphenol, Death-associated protein kinase 1
Authors:Sorrell, F.J, Krojer, T, Wilbek, T.S, Skovgaard, T, Berthelsen, J, Dixon-Clarke, S, Chalk, R, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Stromgaard, K, Knapp, S.
Deposit date:2014-07-03
Release date:2014-07-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.951 Å)
Cite:Identification and characterization of a small-molecule inhibitor of death-associated protein kinase 1.
Chembiochem, 16, 2015
6QFS
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BU of 6qfs by Molmil
Chargeless variant of the Cellulose-binding domain from Cellulomonas fimi
Descriptor: 1,2-ETHANEDIOL, 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, ...
Authors:Young, D.R, Hoejgaard, C, Messens, J, Winther, J.R.
Deposit date:2019-01-10
Release date:2019-12-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Charge Interactions in a Highly Charge-depleted Protein
J.Am.Chem.Soc., 2021
6RIO
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BU of 6rio by Molmil
Imidazole Polyamide-DNA complex NMR structure (5'-CGATGTACATCG-3')
Descriptor: 3-[3-[[4-[[4-[[4-[[4-[[(2~{R})-2-azaniumyl-4-[[1-methyl-4-[[1-methyl-4-[[1-methyl-4-[(1-methylimidazol-2-yl)carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]butanoyl]amino]-1-methyl-imidazol-2-yl]carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]propanoylamino]propyl-dimethyl-azanium, DNA (5'-(*(DC5)P*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*(DG3))-3')
Authors:Padroni, G, Withers, J.M, Taladriz-Sender, A, Reichenbach, L.F, Parkinson, J.A, Burley, G.A.
Deposit date:2019-04-24
Release date:2019-06-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Sequence-Selective Minor Groove Recognition of a DNA Duplex Containing Synthetic Genetic Components.
J.Am.Chem.Soc., 141, 2019
6T64
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A model of the EIAV CA-SP hexamer (C6) from Gag-deltaMA spheres assembled at pH6
Descriptor: Gag polyprotein
Authors:Dick, R.A, Xu, C, Morado, D.R, Kravchuk, V, Ricana, C.L, Lyddon, T.D, Broad, A.M, Feathers, J.R, Johnson, M.C, Vogt, V.M, Perilla, J.R, Briggs, J.A.G, Schur, F.K.M.
Deposit date:2019-10-17
Release date:2020-01-15
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly.
Plos Pathog., 16, 2020
4ZG8
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BU of 4zg8 by Molmil
Crystal structure of Endoglucanase from Perinereis brevicirris
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Fewings, R.S, Swiderska, A, Sanchez-Weatherby, J, Sorensen, T.L.-M, Schnorr, K.M, Kneale, G.G, McGeehan, J.E.
Deposit date:2015-04-22
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Biophysical and structural characterisation of the endoglucanase from Perinereis brevicirris
To Be Published
8RQ8
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BU of 8rq8 by Molmil
Crystal structure of CRBN-midi in complex with mezigdomide
Descriptor: Mezigdomide, Protein cereblon, ZINC ION
Authors:Zollman, D, Kroupova, A, Pethe, J, Ciulli, A.
Deposit date:2024-01-17
Release date:2024-09-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Design of a Cereblon construct for crystallographic and biophysical studies of protein degraders.
Nat Commun, 15, 2024
6T61
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A model of the EIAV CA-SP hexamer (C2) from Gag-deltaMA tubes assembled at pH8
Descriptor: Gag polyprotein
Authors:Dick, R.A, Xu, C, Morado, D.R, Kravchuk, V, Ricana, C.L, Lyddon, T.D, Broad, A.M, Feathers, J.R, Johnson, M.C, Vogt, V.M, Perilla, J.R, Briggs, J.A.G, Schur, F.K.M.
Deposit date:2019-10-17
Release date:2020-01-15
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly.
Plos Pathog., 16, 2020
6T63
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BU of 6t63 by Molmil
A model of the EIAV CA-SP hexamer (C2) from Gag-deltaMA tubes assembled at pH6
Descriptor: Gag polyprotein
Authors:Dick, R.A, Xu, C, Morado, D.R, Kravchuk, V, Ricana, C.L, Lyddon, T.D, Broad, A.M, Feathers, J.R, Johnson, M.C, Vogt, V.M, Perilla, J.R, Briggs, J.A.G, Schur, F.K.M.
Deposit date:2019-10-17
Release date:2020-01-15
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly.
Plos Pathog., 16, 2020
1J8V
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BU of 1j8v by Molmil
Crystal structure of barley beta-D-glucan glucohydrolase isoenzyme Exo1 in complex with 4'-nitrophenyl 3I-thiolaminaritrioside
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4'-NITROPHENYL-S-(BETA-D-GLUCOPYRANOSYL)-(1-3)-(3-THIO-BETA-D-GLUCOPYRANOSYL)-(1-3)-BETA-D-GLUCOPYRANOSIDE, ...
Authors:Hrmova, M, De Gori, R, Smith, B.J, Fairweather, J.K, Driguez, H, Varghese, J.N, Fincher, G.B.
Deposit date:2001-05-22
Release date:2002-06-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for broad substrate specificity in higher plant beta-D-glucan glucohydrolases.
Plant Cell, 14, 2002
1DP5
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BU of 1dp5 by Molmil
THE STRUCTURE OF PROTEINASE A COMPLEXED WITH A IA3 MUTANT INHIBITOR
Descriptor: PROTEINASE A, PROTEINASE INHIBITOR IA3, beta-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Li, M, Phylip, H.L, Lees, W.E, Winther, J.R, Dunn, B.M, Wlodawer, A, Kay, J, Guschina, A.
Deposit date:1999-12-23
Release date:2000-05-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The aspartic proteinase from Saccharomyces cerevisiae folds its own inhibitor into a helix.
Nat.Struct.Biol., 7, 2000
5N5N
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BU of 5n5n by Molmil
Cryo-EM structure of tsA201 cell alpha1B and betaI and betaIVb microtubules
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, ...
Authors:Vemu, A, Atherton, J, Spector, J.O, Moores, C.A, Roll-Mecak, A.
Deposit date:2017-02-14
Release date:2017-11-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Tubulin isoform composition tunes microtubule dynamics.
Mol. Biol. Cell, 28, 2017
5M54
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BU of 5m54 by Molmil
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins
Descriptor: Calmodulin-regulated spectrin-associated protein 1, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Akhmanova, A, Moores, C.A, Baldus, M, Steinmetz, M.O, Topf, M, Roberts, A.J, Grant, B.J, Scarabelli, G, Joseph, A.-J, van Hooff, J.J.E, Houben, K, Hua, S, Luo, Y, Stangier, M.M, Jiang, K, Atherton, J.
Deposit date:2016-10-20
Release date:2017-10-04
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (8 Å)
Cite:A structural model for microtubule minus-end recognition and protection by CAMSAP proteins.
Nat. Struct. Mol. Biol., 24, 2017
5M50
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BU of 5m50 by Molmil
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins
Descriptor: Calmodulin-regulated spectrin-associated protein 3, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Akhmanova, A, Moores, C.A, Baldus, M, Steinmetz, M.O, Topf, M, Roberts, A.J, Grant, B.J, Scarabelli, G, Joseph, A.-P, van Hooff, J.J.E, Houben, K, Hua, S, Luo, Y, Stangier, M.M, Jiang, K, Atherton, J.
Deposit date:2016-10-20
Release date:2017-10-04
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (5.3 Å)
Cite:A structural model for microtubule minus-end recognition and protection by CAMSAP proteins.
Nat. Struct. Mol. Biol., 24, 2017
5M5C
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BU of 5m5c by Molmil
Mechanism of microtubule minus-end recognition and protection by CAMSAP proteins
Descriptor: Calmodulin-regulated spectrin-associated protein 1, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Akhmanova, A, Moores, C.A, Baldus, M, Steinmetz, M.O, Topf, M, Roberts, A.J, Grant, B.J, Scarabelli, G, Joseph, A.-P, van Hooff, J.J.E, Houben, K, Hua, S, Luo, Y, Stangier, M.M, Jiang, K, Atherton, J.
Deposit date:2016-10-21
Release date:2017-10-04
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:A structural model for microtubule minus-end recognition and protection by CAMSAP proteins.
Nat. Struct. Mol. Biol., 24, 2017
1DPJ
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BU of 1dpj by Molmil
THE STRUCTURE OF PROTEINASE A COMPLEXED WITH IA3 PEPTIDE INHIBITOR
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PROTEINASE A, PROTEINASE INHIBITOR IA3 PEPTIDE, ...
Authors:Li, M, Phylip, H.L, Lees, W.E, Winther, J.R, Dunn, B.M, Wlodawer, A, Kay, J, Guschina, A.
Deposit date:1999-12-27
Release date:2000-05-03
Last modified:2021-07-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The aspartic proteinase from Saccharomyces cerevisiae folds its own inhibitor into a helix.
Nat.Struct.Biol., 7, 2000
5FUF
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BU of 5fuf by Molmil
Crystal structure of the Mep2 mutant S453D from Candida albicans
Descriptor: AMMONIUM TRANSPORTER, DECYL-BETA-D-MALTOPYRANOSIDE
Authors:van den Berg, B, Chembath, A, Jefferies, D, Basle, A, Khalid, S, Rutherford, J.
Deposit date:2016-01-26
Release date:2016-05-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.066 Å)
Cite:Structural Basis for Mep2 Ammonium Transceptor Activation by Phosphorylation.
Nat.Commun., 7, 2016
1KLA
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BU of 1kla by Molmil
SOLUTION STRUCTURE OF TGF-B1, NMR, MODELS 1-17 OF 33 STRUCTURES
Descriptor: TRANSFORMING GROWTH FACTOR-BETA 1
Authors:Hinck, A.P, Archer, S.J, Qian, S.W, Roberts, A.B, Sporn, M.B, Weatherbee, J.A, Tsang, M.L.-S, Lucas, R, Zhang, B.-L, Wenker, J, Torchia, D.A.
Deposit date:1996-01-16
Release date:1996-08-17
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Transforming growth factor beta 1: three-dimensional structure in solution and comparison with the X-ray structure of transforming growth factor beta 2.
Biochemistry, 35, 1996
1KLC
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BU of 1klc by Molmil
SOLUTION STRUCTURE OF TGF-B1, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: TRANSFORMING GROWTH FACTOR-BETA 1
Authors:Hinck, A.P, Archer, S.J, Qian, S.W, Roberts, A.B, Sporn, M.B, Weatherbee, J.A, Tsang, M.L.-S, Lucas, R, Zhang, B.-L, Wenker, J, Torchia, D.A.
Deposit date:1996-01-16
Release date:1996-08-17
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Transforming growth factor beta 1: three-dimensional structure in solution and comparison with the X-ray structure of transforming growth factor beta 2.
Biochemistry, 35, 1996
1KLD
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BU of 1kld by Molmil
SOLUTION STRUCTURE OF TGF-B1, NMR, MODELS 18-33 OF 33 STRUCTURES
Descriptor: TRANSFORMING GROWTH FACTOR-BETA 1
Authors:Hinck, A.P, Archer, S.J, Qian, S.W, Roberts, A.B, Sporn, M.B, Weatherbee, J.A, Tsang, M.L.-S, Lucas, R, Zhang, B.-L, Wenker, J, Torchia, D.A.
Deposit date:1996-01-16
Release date:1996-08-17
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Transforming growth factor beta 1: three-dimensional structure in solution and comparison with the X-ray structure of transforming growth factor beta 2.
Biochemistry, 35, 1996
7K7H
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BU of 7k7h by Molmil
Density-fitted Model Structure of Antibody Variable Domains of TyTx1 in Complex with PltB pentamer of Typhoid Toxin
Descriptor: Fab Heavy Chain Variable Domain, Fab Light Chain Variable Domain, Pertussis like toxin subunit B, ...
Authors:Nguyen, T, Feathers, J.R, Fromme, J.C, Song, J.
Deposit date:2020-09-22
Release date:2021-09-01
Last modified:2021-09-22
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The structural basis of Salmonella A 2 B 5 toxin neutralization by antibodies targeting the glycan-receptor binding subunits.
Cell Rep, 36, 2021
7K7I
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BU of 7k7i by Molmil
Density-fitted Model Structure of Antibody Variable Domains of TyTx4 in Complex with PltB pentamer of Typhoid Toxin
Descriptor: Fab Heavy Chain Variable Domain, Fab Light Chain Variable Domain, Putative pertussis-like toxin subunit
Authors:Nguyen, T, Feathers, J.R, Fromme, J.C, Song, J.
Deposit date:2020-09-22
Release date:2021-09-01
Last modified:2021-09-22
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:The structural basis of Salmonella A 2 B 5 toxin neutralization by antibodies targeting the glycan-receptor binding subunits.
Cell Rep, 36, 2021
6CME
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BU of 6cme by Molmil
Structure of wild-type ISL2-LID in complex with LHX4-LIM1+2
Descriptor: LIM/homeobox protein Lhx4,Insulin gene enhancer protein ISL-2, ZINC ION
Authors:Stokes, P.H, Silva, A, Guss, J.M, Matthews, J.M.
Deposit date:2018-03-04
Release date:2019-04-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Mutation in a flexible linker modulates binding affinity for modular complexes.
Proteins, 87, 2019
3MMK
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BU of 3mmk by Molmil
The structural basis for partial redundancy in a class of transcription factors, the lim-homeodomain proteins, in neural cell type specification
Descriptor: CHLORIDE ION, Fusion of LIM/homeobox protein Lhx4, linker, ...
Authors:Gadd, M.S, Langley, D.B, Guss, J.M, Matthews, J.M.
Deposit date:2010-04-20
Release date:2011-07-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.157 Å)
Cite:The structural basis for partial redundancy in a class of transcription factors, the lim-homeodomain proteins, in neural cell type specification.
J.Biol.Chem., 2011
4LTJ
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BU of 4ltj by Molmil
Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity (5/7)
Descriptor: BARIUM ION, DNA, Ru(tap)2(dppz) complex
Authors:Hall, J.P, Sanchez-Weatherby, J, Cardin, C.J.
Deposit date:2013-07-23
Release date:2014-09-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Controlled Dehydration of a Ruthenium Complex-DNA Crystal Induces Reversible DNA Kinking.
J.Am.Chem.Soc., 136, 2014

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