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PDB: 109 results

8SFP
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BU of 8sfp by Molmil
WT CRISPR-Cas12a with the target strand in the RuvC active site.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (40-MER), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*TP*A)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:WT CRISPR-Cas12a with the target strand in the RuvC active site.
To Be Published
8T6O
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BU of 8t6o by Molmil
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loop
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-16
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8T7S
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BU of 8t7s by Molmil
SpRYmer bound to NAC PAM DNA
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, MAGNESIUM ION, NTS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-21
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8FD8
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BU of 8fd8 by Molmil
human 15-PGDH with NADH bound
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 15-hydroxyprostaglandin dehydrogenase [NAD(+)]
Authors:Huang, W, Taylor, D.
Deposit date:2022-12-02
Release date:2023-03-08
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Small molecule inhibitors of 15-PGDH exploit a physiologic induced-fit closing system.
Nat Commun, 14, 2023
4CMQ
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BU of 4cmq by Molmil
Crystal structure of Mn-bound S.pyogenes Cas9
Descriptor: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1, MANGANESE (II) ION, SULFATE ION
Authors:Jinek, M, Jiang, F, Taylor, D.W, Sternberg, S.H, Kaya, E, Ma, E, Anders, C, Hauer, M, Zhou, K, Lin, S, Kaplan, M, Iavarone, A.T, Charpentier, E, Nogales, E, Doudna, J.A.
Deposit date:2014-01-17
Release date:2014-02-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Structures of Cas9 Endonucleases Reveal RNA- Mediated Conformational Activation
Science, 343, 2014
4CMP
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BU of 4cmp by Molmil
Crystal structure of S. pyogenes Cas9
Descriptor: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1, MAGNESIUM ION, SULFATE ION
Authors:Jinek, M, Jiang, F, Taylor, D.W, Sternberg, S.H, Kaya, E, Ma, E, Anders, C, Hauer, M, Zhou, K, Lin, S, Kaplan, M, Iavarone, A.T, Charpentier, E, Nogales, E, Doudna, J.A.
Deposit date:2014-01-16
Release date:2014-02-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structures of Cas9 Endonucleases Reveal RNA-Mediated Conformational Activation.
Science, 343, 2014
8SRS
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BU of 8srs by Molmil
SpRY-Cas9:gRNA complex targeting TAC PAM DNA
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, MAGNESIUM ION, NTS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-05-06
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8T6S
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BU of 8t6s by Molmil
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 10 bp R-loop
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-18
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8T6T
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BU of 8t6t by Molmil
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 13 bp R-loop
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-18
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8SQH
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BU of 8sqh by Molmil
SpRY-Cas9:gRNA complex targeting TTC PAM DNA
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, MAGNESIUM ION, NTS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-05-04
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.69 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8T6Y
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BU of 8t6y by Molmil
SpRY-Cas9:gRNA complex bound to non-target DNA with 1 bp R-loop
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-19
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8T76
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BU of 8t76 by Molmil
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 3 bp R-loop
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-19
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8T78
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BU of 8t78 by Molmil
SpRY-Cas9:gRNA complex bound to non-target DNA with 8 bp R-loop
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-19
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8T77
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BU of 8t77 by Molmil
SpRY-Cas9:gRNA complex bound to non-target DNA with 6 bp R-loop
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-19
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8SPQ
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BU of 8spq by Molmil
SpRY-Cas9:gRNA complex targeting TGG PAM DNA
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, MAGNESIUM ION, NTS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-05-03
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8T6P
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BU of 8t6p by Molmil
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 2 bp R-loop
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-16
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8T6X
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BU of 8t6x by Molmil
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 18 bp R-loop
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, MAGNESIUM ION, NTS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-19
Release date:2024-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8T79
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BU of 8t79 by Molmil
SpRY-Cas9:gRNA complex bound to non-target DNA with 10 bp R-loop
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, NTS, TS, ...
Authors:Hibshman, G.N, Bravo, J.P.K, Taylor, D.W.
Deposit date:2023-06-20
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9.
Nat Commun, 15, 2024
8D4A
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BU of 8d4a by Molmil
Cas12a2 quaternary complex
Descriptor: DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ...
Authors:Bravo, J.P.K, Taylor, D.W.
Deposit date:2022-06-01
Release date:2023-01-18
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:RNA targeting unleashes indiscriminate nuclease activity of CRISPR-Cas12a2.
Nature, 613, 2023
8S9V
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BU of 8s9v by Molmil
CRISPR-Cas type III-D effector complex bound to a self-target RNA in the pre-cleavage state
Descriptor: CRISPR RNA, Cas10, Cas7-2x, ...
Authors:Schwartz, E.A, Taylor, D.W.
Deposit date:2023-03-30
Release date:2024-04-24
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3 Å)
Cite:RNA targeting and cleavage by the type III-Dv CRISPR effector complex.
Nat Commun, 15, 2024
8S9X
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BU of 8s9x by Molmil
CRISPR-Cas type III-D effector complex bound to self-target RNA in a post-cleavage state
Descriptor: CRISPR RNA, Cas10, Cas7-2x, ...
Authors:Schwartz, E.A, Taylor, D.W.
Deposit date:2023-03-30
Release date:2024-04-24
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:RNA targeting and cleavage by the type III-Dv CRISPR effector complex.
Nat Commun, 15, 2024
8S9T
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BU of 8s9t by Molmil
CRISPR-Cas type III-D effector complex
Descriptor: CRISPR RNA, Cas10, Cas7-2x, ...
Authors:Schwartz, E.A, Taylor, D.W.
Deposit date:2023-03-30
Release date:2024-04-24
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:RNA targeting and cleavage by the type III-Dv CRISPR effector complex.
Nat Commun, 15, 2024
8S9U
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BU of 8s9u by Molmil
CRISPR-Cas type III-D effector complex bound to a target RNA
Descriptor: CRISPR RNA, Cas10, Cas7-2x, ...
Authors:Schwartz, E.A, Taylor, D.W.
Deposit date:2023-03-30
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Type III CRISPR-Cas effectors act as protein-assisted ribozymes
To Be Published
8DFS
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BU of 8dfs by Molmil
type I-C Cascade bound to AcrIF2
Descriptor: Anti-CRISPR protein 30, CRISPR-associated protein, CT1133 family, ...
Authors:O'Brien, R.E, Bravo, J.P.K, Ramos, D, Hibshman, G.N, Wright, J.T, Taylor, D.W.
Deposit date:2022-06-22
Release date:2023-02-22
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural snapshots of R-loop formation by a type I-C CRISPR Cascade.
Mol.Cell, 83, 2023
8DFO
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BU of 8dfo by Molmil
type I-C Cascade bound to AcrIC4
Descriptor: AcrIC4, CRISPR-associated protein, CT1133 family, ...
Authors:O'Brien, R.E, Bravo, J.P.K, Ramos, D, Hibshman, G.N, Wright, J.T, Taylor, D.W.
Deposit date:2022-06-22
Release date:2023-02-15
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural snapshots of R-loop formation by a type I-C CRISPR Cascade.
Mol.Cell, 83, 2023

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PDB entries from 2024-07-17

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