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PDB: 155 results

3LIL
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BU of 3lil by Molmil
Human MMP12 in complex with non-zinc chelating inhibitor
Descriptor: ACETOHYDROXAMIC ACID, CALCIUM ION, Macrophage metalloelastase, ...
Authors:Stura, E.A, Dive, V, Devel, L, Czarny, B, Vera, L, Beau, F.
Deposit date:2010-01-25
Release date:2010-09-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Insights from selective non-phosphinic inhibitors of MMP-12 tailored to fit with an S1' loop canonical conformation.
J.Biol.Chem., 285, 2010
3LIK
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BU of 3lik by Molmil
Human MMP12 in complex with non-zinc chelating inhibitor
Descriptor: ACETOHYDROXAMIC ACID, CALCIUM ION, HEXAETHYLENE GLYCOL, ...
Authors:Stura, E.A, Dive, V, Devel, L, Czarny, B, Vera, L, Beau, F.
Deposit date:2010-01-25
Release date:2010-09-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Insights from selective non-phosphinic inhibitors of MMP-12 tailored to fit with an S1' loop canonical conformation.
J.Biol.Chem., 285, 2010
4FU4
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BU of 4fu4 by Molmil
Human collagenase 3 (MMP-13) with peptide from pro-domain
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Stura, E.A, Vera, L, Visse, R, Nagase, H, Dive, V.
Deposit date:2012-06-28
Release date:2013-08-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.849 Å)
Cite:Crystal structure of full-length human collagenase 3 (MMP-13) with peptides in the active site defines exosites in the catalytic domain.
Faseb J., 27, 2013
4GQL
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BU of 4gql by Molmil
Crystal structure of the catalytic domain of Human MMP12 in complex with selective phosphinic inhibitor RXP470.1
Descriptor: CALCIUM ION, Macrophage metalloelastase, N-[(2S)-3-[(S)-(4-bromophenyl)(hydroxy)phosphoryl]-2-{[3-(3'-chlorobiphenyl-4-yl)-1,2-oxazol-5-yl]methyl}propanoyl]-L-alpha-glutamyl-L-alpha-glutamine, ...
Authors:Stura, E.A, Vera, L, Beau, F, Devel, L, Cassar-Lajeunesse, E, Dive, V.
Deposit date:2012-08-23
Release date:2013-02-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Molecular determinants of a selective matrix metalloprotease-12 inhibitor: insights from crystallography and thermodynamic studies.
J.Med.Chem., 56, 2013
4GR3
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BU of 4gr3 by Molmil
Crystal structure of the catalytic domain of Human MMP12 in complex with selective phosphinic inhibitor RXP470A
Descriptor: CALCIUM ION, Macrophage metalloelastase, N-{(2S)-3-[(S)-(4-bromophenyl)(hydroxy)phosphoryl]-2-[(3-phenyl-1,2-oxazol-5-yl)methyl]propanoyl}-L-alpha-glutamyl-L-al pha-glutamine, ...
Authors:Stura, E.A, Vera, L, Beau, F, Devel, L, Cassar-Lajeunesse, E, Dive, V.
Deposit date:2012-08-24
Release date:2013-02-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.494 Å)
Cite:Molecular determinants of a selective matrix metalloprotease-12 inhibitor: insights from crystallography and thermodynamic studies.
J.Med.Chem., 56, 2013
4H1Q
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BU of 4h1q by Molmil
Crystal structure of mutant MMP-9 catalytic domain in complex with a twin inhibitor.
Descriptor: CALCIUM ION, Matrix metalloproteinase-9, N-(4-{[(3R)-3-[(biphenyl-4-ylsulfonyl)(propan-2-yloxy)amino]-4-(hydroxyamino)-4-oxobutyl]amino}-4-oxobutyl)-N'-(4-{[(3S)-3-[(biphenyl-4-ylsulfonyl)(propan-2-yloxy)amino]-4-(hydroxyamino)-4-oxobutyl]amino}-4-oxobutyl)benzene-1,3-dicarboxamide, ...
Authors:Stura, E.A, Vera, L, Cassar-Lajeunesse, E, Nuti, E, Catalani, M.P, Dive, V, Rossello, A.
Deposit date:2012-09-11
Release date:2013-04-24
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Crystallization of bi-functional ligand protein complexes.
J.Struct.Biol., 182, 2013
4GR8
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BU of 4gr8 by Molmil
Crystal structure of the catalytic domain of Human MMP12 in complex with selective phosphinic inhibitor RXP470C
Descriptor: CALCIUM ION, IMIDAZOLE, Macrophage metalloelastase, ...
Authors:Stura, E.A, Vera, L, Beau, F, Devel, L, Cassar-Lajeunesse, E, Dive, V.
Deposit date:2012-08-24
Release date:2013-02-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.299 Å)
Cite:Molecular determinants of a selective matrix metalloprotease-12 inhibitor: insights from crystallography and thermodynamic studies.
J.Med.Chem., 56, 2013
4H2E
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BU of 4h2e by Molmil
Crystal structure of an MMP twin inhibitor complexing two MMP-9 catalytic domains
Descriptor: ACETATE ION, BICINE, CALCIUM ION, ...
Authors:Stura, E.A, Vera, L, Cassar-Lajeunesse, E, Nuti, E, Catalani, M.P, Dive, V, Rossello, A.
Deposit date:2012-09-12
Release date:2013-04-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:Crystallization of bi-functional ligand protein complexes.
J.Struct.Biol., 182, 2013
4GR0
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BU of 4gr0 by Molmil
Crystal structure of the catalytic domain of Human MMP12 in complex with selective phosphinic inhibitor RXP470B
Descriptor: CALCIUM ION, Macrophage metalloelastase, N-[(2S)-3-[(R)-(4-bromophenyl)(hydroxy)phosphoryl]-2-{[3-(3'-chlorobiphenyl-4-yl)-1,2-oxazol-5-yl]methyl}propanoyl]-L-a lanyl-L-alaninamide, ...
Authors:Stura, E.A, Vera, L, Beau, F, Devel, L, Cassar-Lajeunesse, E, Dive, V.
Deposit date:2012-08-24
Release date:2013-02-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.497 Å)
Cite:Molecular determinants of a selective matrix metalloprotease-12 inhibitor: insights from crystallography and thermodynamic studies.
J.Med.Chem., 56, 2013
4HMA
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BU of 4hma by Molmil
Crystal structure of an MMP twin carboxylate based inhibitor LC20 in complex with the MMP-9 catalytic domain
Descriptor: CALCIUM ION, D-MALATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Stura, E.A, Antoni, C, Vera, L, Nuti, E, Carafa, L, Cassar-Lajeunesse, E, Dive, V, Rossello, A.
Deposit date:2012-10-18
Release date:2013-04-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystallization of bi-functional ligand protein complexes.
J.Struct.Biol., 182, 2013
4I03
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BU of 4i03 by Molmil
Human MMP12 in complex with a PEG-linked bifunctional L-glutamate motif inhibitor
Descriptor: (4R,22R)-5,21-dioxo-4,22-bis({3-[4-(4-phenylthiophen-2-yl)phenyl]propanoyl}amino)-10,13,16-trioxa-6,20-diazapentacosane-1,25-dioic acid, 1,2-ETHANEDIOL, CALCIUM ION, ...
Authors:Stura, E.A, Vera, L, Devel, L, Cassar-Lajeunesse, E, Dive, V.
Deposit date:2012-11-16
Release date:2013-04-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystallization of bi-functional ligand protein complexes.
J.Struct.Biol., 182, 2013
4IYE
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BU of 4iye by Molmil
Crystal structure of AdTx1 (rho-Da1a) from eastern green mamba (Dendroaspis angusticeps)
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Toxin AdTx1
Authors:Stura, E.A, Vera, L, Maiga, A.A, Marchetti, C, Lorphelin, A, Bellanger, L, Servant, D, Gilles, N.
Deposit date:2013-01-28
Release date:2013-05-08
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.951 Å)
Cite:Crystallization of recombinant green mamba rho-Da1a toxin during a lyophilization procedure and its structure determination.
Acta Crystallogr.,Sect.F, 69, 2013
4JIJ
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BU of 4jij by Molmil
Crystal structure of an inactive mutant of MMP-9 catalytic domain in complex with a fluorogenic synthetic peptidic substrate
Descriptor: 1,2-ETHANEDIOL, AZIDE ION, CALCIUM ION, ...
Authors:Stura, E.A, Vera, L, Cassar-Lajeunesse, E, Tranchant, I, Amoura, M, Dive, V.
Deposit date:2013-03-06
Release date:2014-03-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.698 Å)
Cite:Halogen Bonding Controls Selectivity of FRET Substrate Probes for MMP-9.
Chem.Biol., 21, 2014
4JQG
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BU of 4jqg by Molmil
Crystal structure of an inactive mutant of MMP-9 catalytic domain in complex with a fluorogenic synthetic peptidic substrate with a fluorine atom.
Descriptor: 1,2-ETHANEDIOL, AZIDE ION, CALCIUM ION, ...
Authors:Stura, E.A, Vera, L, Cassar-Lajeunesse, E, Tranchant, I, Amoura, M, Dive, V.
Deposit date:2013-03-20
Release date:2014-03-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.849 Å)
Cite:Halogen Bonding Controls Selectivity of FRET Substrate Probes for MMP-9.
Chem.Biol., 21, 2014
4KS6
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BU of 4ks6 by Molmil
Crystal structure of the catalytic domain of botulinum neurotoxin BoNT/A C134S mutant with covalent inhibitor that modifies Cys-165 causing disorder in 166-174 stretch
Descriptor: 1,2-ETHANEDIOL, Botulinum neurotoxin A light chain, DI(HYDROXYETHYL)ETHER, ...
Authors:Stura, E.A, Vera, L, Guitot, K, Dive, V.
Deposit date:2013-05-17
Release date:2014-06-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Covalent modification of the active site cysteine stresses Clostridium botulinum neurotoxin A
To be Published
4KUF
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BU of 4kuf by Molmil
Crystal structure of the catalytic domain of botulinum neurotoxin BoNT/A C134 mutant with MTSEA modified Cys-165 causing stretch disorder
Descriptor: (2S)-2-hydroxybutanedioic acid, 1,2-ETHANEDIOL, Botulinum neurotoxin A light chain, ...
Authors:Stura, E.A, Vera, L, Ptchelkine, D, Bakirci, H, Garcia, S, Dive, V.
Deposit date:2013-05-22
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.697 Å)
Cite:Covalent modification of the active site cysteine stresses Clostridium botulinum neurotoxin A
To be Published
4KTX
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BU of 4ktx by Molmil
Crystal structure of the catalytic domain of botulinum neurotoxin BoNT/A C134S mutant with covalent inhibitor that modifies Cys-165 causing disorder in 167-174 stretch
Descriptor: Botulinum neurotoxin A light chain, GLYCEROL, Peptide inhibitor MPT-DPP-ARG-G-LEU-NH2, ...
Authors:Stura, E.A, Vera, L, Guitot, K, Dive, V.
Deposit date:2013-05-21
Release date:2014-10-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Covalent modification of the active site cysteine stresses Clostridium botulinum neurotoxin A
To be Published
5N5Q
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BU of 5n5q by Molmil
Human TTR altered conformation from soaking in iron chloride.
Descriptor: ACETATE ION, FE (III) ION, Transthyretin, ...
Authors:Ciccone, L, Savko, M, Shepard, W, Stura, E.A.
Deposit date:2017-02-14
Release date:2018-03-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Copper mediated amyloid-beta binding to Transthyretin.
Sci Rep, 8, 2018
5N7C
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BU of 5n7c by Molmil
Human TTR altered conformation from soaking in CuCl2.
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, COPPER (II) ION, ...
Authors:Ciccone, L, Savko, M, Shepard, W, Stura, E.A.
Deposit date:2017-02-20
Release date:2018-03-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Copper mediated amyloid-beta binding to Transthyretin.
Sci Rep, 8, 2018
5N62
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BU of 5n62 by Molmil
Human TTR crystals soaked in manganese chloride.
Descriptor: MANGANESE (II) ION, Transthyretin
Authors:Ciccone, L, Savko, M, Shepard, W, Stura, E.A.
Deposit date:2017-02-14
Release date:2018-03-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Copper mediated amyloid-beta binding to Transthyretin.
Sci Rep, 8, 2018
8AJ7
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BU of 8aj7 by Molmil
Kunitz domain of Amblyomin-X
Descriptor: 1,2-ETHANEDIOL, Kunitz domain of Amblyomin-X
Authors:Ciccone, L, Servent, D, Stura, E.A.
Deposit date:2022-07-27
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and functional properties of the Kunitz-type and C-terminal domains of Amblyomin-X supporting its antitumor activity.
Front Mol Biosci, 10, 2023
4TQP
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BU of 4tqp by Molmil
Human transthyretin (TTR) complexed with (R)-3-(9H-fluoren-9-ylideneaminooxy)-2-methyl-N-(methylsulfonyl) propionamide in a dual binding mode
Descriptor: (2R)-3-[(9H-fluoren-9-ylideneamino)oxy]-2-methyl-N-(methylsulfonyl)propanamide, GLYCEROL, Transthyretin
Authors:Ciccone, L, Nencetti, S, Rossello, A, Orlandini, E, Stura, E.A.
Deposit date:2014-06-11
Release date:2015-06-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:X-ray crystal structure and activity of fluorenyl-based compounds as transthyretin fibrillogenesis inhibitors.
J Enzyme Inhib Med Chem, 2015
4TQ8
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BU of 4tq8 by Molmil
Dual binding mode for 3-(9H-fluoren-9-ylideneaminooxy)propanoic acid binding to Human transthyretin (TTR)
Descriptor: 1,2-ETHANEDIOL, 3-[(9H-fluoren-9-ylideneamino)oxy]propanoic acid, Transthyretin
Authors:Ciccone, L, Orlandini, E, Nencetti, S, Rossello, A, Stura, E.A.
Deposit date:2014-06-10
Release date:2015-06-24
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:X-ray crystal structure and activity of fluorenyl-based compounds as transthyretin fibrillogenesis inhibitors.
J Enzyme Inhib Med Chem, 2015
4TQH
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BU of 4tqh by Molmil
Human transthyretin (TTR) complexed with 3-(9H-fluoren-9-ylideneaminooxy)ethanoic acid
Descriptor: 1,2-ETHANEDIOL, Transthyretin, [(9H-fluoren-9-ylideneamino)oxy]acetic acid
Authors:Ciccone, L, Nencetti, S, Rossello, A, Orlandini, E, Stura, E.A.
Deposit date:2014-06-11
Release date:2015-06-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.511 Å)
Cite:X-ray crystal structure and activity of fluorenyl-based compounds as transthyretin fibrillogenesis inhibitors.
J Enzyme Inhib Med Chem, 2015
6F2E
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BU of 6f2e by Molmil
Crystal structure of the APO Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO1
Descriptor: ACETIC ACID, L-lysine 3-hydroxylase
Authors:Isabet, T, Stura, E.A, Legrand, P, Zaparucha, A, Bastard, K.
Deposit date:2017-11-24
Release date:2018-11-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family.
Sci Rep, 8, 2018

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PDB entries from 2024-05-29

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