Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 301 results

2KGG
DownloadVisualize
BU of 2kgg by Molmil
Solution Structure of JARID1A C-terminal PHD finger
Descriptor: Histone demethylase JARID1A, ZINC ION
Authors:Song, J, Wang, Z, Patel, D.J.
Deposit date:2009-03-11
Release date:2009-05-05
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger.
Nature, 459, 2009
2JWN
DownloadVisualize
BU of 2jwn by Molmil
Solution NMR structure of the protease-resistent domain of Xenopus laevis ePABP2
Descriptor: Embryonic polyadenylate-binding protein 2-B
Authors:Song, J, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2007-10-16
Release date:2007-10-30
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural basis for RNA recognition by a type II poly(A)-binding protein.
Proc.Natl.Acad.Sci.USA, 105, 2008
1BAH
DownloadVisualize
BU of 1bah by Molmil
A TWO DISULFIDE DERIVATIVE OF CHARYBDOTOXIN WITH DISULFIDE 13-33 REPLACED BY TWO ALPHA-AMINOBUTYRIC ACIDS, NMR, 30 STRUCTURES
Descriptor: CHARYBDOTOXIN
Authors:Song, J, Gilquin, B, Jamin, N, Guenneugues, M, Dauplais, M, Vita, C, Menez, A.
Deposit date:1996-06-06
Release date:1997-01-11
Last modified:2020-01-15
Method:SOLUTION NMR
Cite:NMR solution structure of a two-disulfide derivative of charybdotoxin: structural evidence for conservation of scorpion toxin alpha/beta motif and its hydrophobic side chain packing.
Biochemistry, 36, 1997
6PZV
DownloadVisualize
BU of 6pzv by Molmil
Crystal Structure of Bovine DNMT1 RFTS domain in complex with H3K9me3 and Ubiquitin
Descriptor: CITRATE ANION, DNA (cytosine-5)-methyltransferase 1, Histone H3.3, ...
Authors:Ren, W, Song, J.
Deposit date:2019-08-01
Release date:2020-07-15
Last modified:2020-08-12
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Direct readout of heterochromatic H3K9me3 regulates DNMT1-mediated maintenance DNA methylation.
Proc.Natl.Acad.Sci.USA, 117, 2020
3M3T
DownloadVisualize
BU of 3m3t by Molmil
SARS-CoV main protease monomeric Arg298Ala mutant with N-terminal additional residues (Gly-Ser)
Descriptor: 3C-like proteinase
Authors:Shi, J.H, Song, J.X.
Deposit date:2010-03-10
Release date:2011-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:SARS-CoV main protease with N-terminal extension regulated by mutation on C-terminal domain
To be Published
3M3S
DownloadVisualize
BU of 3m3s by Molmil
Crystal structure of SARS-COV main protease Asn214Ala mutant with authorize N-terminus
Descriptor: 3C-like proteinase
Authors:Shi, J.H, Song, J.X.
Deposit date:2010-03-10
Release date:2011-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Dynamical Inactivation of the Catalytic Machinery of the SARS-CoV 3C-Like Protease as Triggered by the N214A Mutation on the Extra Domain
To be Published
4K6L
DownloadVisualize
BU of 4k6l by Molmil
Structure of Typhoid Toxin
Descriptor: Cytolethal distending toxin subunit B homolog, GLYCEROL, Putative pertussis-like toxin subunit
Authors:Gao, X, Song, J, Galan, J.
Deposit date:2013-04-16
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.393 Å)
Cite:Structure and function of the Salmonella Typhi chimaeric A(2)B(5) typhoid toxin.
Nature, 499, 2013
5IDH
DownloadVisualize
BU of 5idh by Molmil
Crystal structure of Enterococcus faecalis lipoate-protein ligase A (lplA-2) in complex with 8-bromooctanoic acid
Descriptor: 8-bromooctanoic acid, Lipoate--protein ligase
Authors:Hughes, S.J, Song, J.H, Antoshchenko, T, Park, H.W.
Deposit date:2016-02-24
Release date:2017-03-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of Enterococcus faecalis lipoate-protein ligase A (lplA-2) in complex with 8-bromooctanoic acid
To Be Published
8H3H
DownloadVisualize
BU of 8h3h by Molmil
Human ATAD2 Walker B mutant, ATP state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATPase family AAA domain-containing protein 2
Authors:Cho, C, Song, J.
Deposit date:2022-10-08
Release date:2023-10-18
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Structure of the human ATAD2 AAA+ histone chaperone reveals mechanism of regulation and inter-subunit communication.
Commun Biol, 6, 2023
6F57
DownloadVisualize
BU of 6f57 by Molmil
Crystal structure of DNMT3A-DNMT3L in complex with single CpG-containing DNA
Descriptor: DNA (5'-D(*AP*GP*AP*GP*CP*GP*CP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*GP*ZP*GP*CP*TP*CP*T)-3'), DNA (cytosine-5)-methyltransferase 3-like, ...
Authors:Zhang, Z.M, Song, J.
Deposit date:2017-12-01
Release date:2018-01-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.098 Å)
Cite:Structural basis for DNMT3A-mediated de novo DNA methylation.
Nature, 554, 2018
6AHC
DownloadVisualize
BU of 6ahc by Molmil
Cryo-EM structure of aldehyde-alcohol dehydrogenase reveals a high-order helical architecture critical for its activity
Descriptor: Aldehyde-alcohol dehydrogenase
Authors:Kim, G, Song, J.J.
Deposit date:2018-08-17
Release date:2019-08-21
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Aldehyde-alcohol dehydrogenase forms a high-order spirosome architecture critical for its activity.
Nat Commun, 10, 2019
6A6P
DownloadVisualize
BU of 6a6p by Molmil
Crystal Structure of Peroxisome Proliferator-Activated Receptor Delta (PPARd)LBD in Complex with DN003316
Descriptor: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, Peroxisome proliferator-activated receptor delta, heptyl beta-D-glucopyranoside, ...
Authors:Chin, J.W, Cho, S.J, Song, J.Y, Ha, J.H.
Deposit date:2018-06-29
Release date:2019-07-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Peroxisome Proliferator-Activated Receptor Delta (PPARd)LBD in Complex with DN003316
To Be Published
4HVZ
DownloadVisualize
BU of 4hvz by Molmil
Crystal structure of brucella abortus immunogenic BP26 protein
Descriptor: 26 kDa periplasmic immunogenic protein
Authors:Kim, D, Park, J, Oh, B, Song, J.
Deposit date:2012-11-07
Release date:2013-01-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Brucella Immunogenic BP26 Forms a Channel-like Structure.
J.Mol.Biol., 425, 2013
6A6K
DownloadVisualize
BU of 6a6k by Molmil
Crystal structure of Estrogen-related Receptor-3 (ERR-gamma) ligand binding domain with DN201000
Descriptor: 3-[(~{E})-5-oxidanyl-2-phenyl-1-[4-(4-propan-2-ylpiperazin-1-yl)phenyl]pent-1-enyl]phenol, Estrogen-related receptor gamma
Authors:Yoon, H, Kim, J, Chin, J, Cho, S.J, Song, J.
Deposit date:2018-06-28
Release date:2019-04-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Discovery of Potent, Selective, and Orally Bioavailable Estrogen-Related Receptor-gamma Inverse Agonists To Restore the Sodium Iodide Symporter Function in Anaplastic Thyroid Cancer.
J. Med. Chem., 62, 2019
6B3X
DownloadVisualize
BU of 6b3x by Molmil
Crystal structure of CstF-50 in complex with CstF-77
Descriptor: Cleavage stimulation factor subunit 1, Cleavage stimulation factor subunit 3
Authors:Yang, W, Hsu, P, Yang, F, Song, J.E, Varani, G.
Deposit date:2017-09-25
Release date:2017-11-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Reconstitution of the CstF complex unveils a regulatory role for CstF-50 in recognition of 3'-end processing signals.
Nucleic Acids Res., 46, 2018
8FZ9
DownloadVisualize
BU of 8fz9 by Molmil
Crystal Structure of Bacillus cereus TIR protein
Descriptor: CITRIC ACID, TIR
Authors:Khudaverdyan, N, Song, J.
Deposit date:2023-01-27
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal Structure of Toll/interleukin-1 receptor like protein from Bacillus cereus (BcTir)
To Be Published
6BRR
DownloadVisualize
BU of 6brr by Molmil
Crystal structure of DNMT3A (R836A)-DNMT3L in complex with DNA containing two CpG sites
Descriptor: DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3A, ...
Authors:Zhang, Z.M, Song, J.
Deposit date:2017-11-30
Release date:2018-01-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:Structural basis for DNMT3A-mediated de novo DNA methylation.
Nature, 554, 2018
8TDR
DownloadVisualize
BU of 8tdr by Molmil
Crystal structure of the methyltransferase domain of DNMT3A homotetramer
Descriptor: DNA (cytosine-5)-methyltransferase 3A, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Lu, J.W, Song, J.K.
Deposit date:2023-07-04
Release date:2024-03-13
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (3.32 Å)
Cite:Structure-guided functional suppression of AML-associated DNMT3A hotspot mutations.
Nat Commun, 15, 2024
8TE3
DownloadVisualize
BU of 8te3 by Molmil
Crystal structure of the methyltransferase domain of R882C/R676K DNMT3A homotetramer
Descriptor: DNA (cytosine-5)-methyltransferase 3A, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Lu, J.W, Song, J.K.
Deposit date:2023-07-05
Release date:2024-03-13
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure-guided functional suppression of AML-associated DNMT3A hotspot mutations.
Nat Commun, 15, 2024
8TE1
DownloadVisualize
BU of 8te1 by Molmil
Crystal structure of the methyltransferase domain of R882H/R676K DNMT3A homotetramer
Descriptor: DNA (cytosine-5)-methyltransferase 3A, GLYCEROL, L(+)-TARTARIC ACID, ...
Authors:Lu, J.W, Song, J.K.
Deposit date:2023-07-05
Release date:2024-03-13
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Structure-guided functional suppression of AML-associated DNMT3A hotspot mutations.
Nat Commun, 15, 2024
8TE4
DownloadVisualize
BU of 8te4 by Molmil
Crystal structure of the methyltransferase domain of R882H/N879A DNMT3A homotetramer
Descriptor: DNA (cytosine-5)-methyltransferase 3A, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Lu, J.W, Song, J.K.
Deposit date:2023-07-05
Release date:2024-03-13
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure-guided functional suppression of AML-associated DNMT3A hotspot mutations.
Nat Commun, 15, 2024
6JQ0
DownloadVisualize
BU of 6jq0 by Molmil
CryoEM structure of Abo1 Walker B (E372Q) mutant hexamer - ATP complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Uncharacterized AAA domain-containing protein C31G5.19, ...
Authors:Cho, C, Jang, J, Song, J.J.
Deposit date:2019-03-28
Release date:2019-12-25
Last modified:2020-01-01
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:Structural basis of nucleosome assembly by the Abo1 AAA+ ATPase histone chaperone.
Nat Commun, 10, 2019
5TMH
DownloadVisualize
BU of 5tmh by Molmil
Structure of Zika virus NS5
Descriptor: GLYCEROL, Polyprotein, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Wang, B, Tan, X, Song, J.
Deposit date:2016-10-12
Release date:2017-02-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.278 Å)
Cite:The structure of Zika virus NS5 reveals a conserved domain conformation.
Nat Commun, 8, 2017
8U5H
DownloadVisualize
BU of 8u5h by Molmil
Cryo-EM structure of human DNMT3A UDR bound to H2AK119ub1-modified nucleosome
Descriptor: DNA (cytosine-5)-methyltransferase 3A, Histone H2A, Histone H2B 1.1, ...
Authors:Chen, X, Song, J.
Deposit date:2023-09-12
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Cryo-EM structure of human DNMT3A N-terminal domain bound to H2AK119Ub nucleosome
To Be Published
6KNR
DownloadVisualize
BU of 6knr by Molmil
Crystal structure of Estrogen-related receptor gamma ligand-binding domain with DN200699
Descriptor: (E)-4-(1-(4-(1-cyclopropylpiperidin-4-yl)phenyl)-5-hydroxy-2-phenylpent-1-en-1-yl)phenol, Estrogen-related receptor gamma
Authors:Yoon, H, Kim, J, Chin, J, Song, J, Cho, S.J.
Deposit date:2019-08-07
Release date:2020-08-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.804 Å)
Cite:An orally available inverse agonist of estrogen-related receptor gamma showed expanded efficacy for the radioiodine therapy of poorly differentiated thyroid cancer.
Eur.J.Med.Chem., 205, 2020

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon