Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 297 results

1M8B
DownloadVisualize
BU of 1m8b by Molmil
Solution structure of the C State of turkey ovomucoid at pH 2.5
Descriptor: Ovomucoid
Authors:Song, J, Laskowski Jr, M, Qasim, M.A, Markley, J.L.
Deposit date:2002-07-24
Release date:2002-09-04
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics.
Biochemistry, 42, 2003
1TIZ
DownloadVisualize
BU of 1tiz by Molmil
Solution Structure of a Calmodulin-Like Calcium-Binding Domain from Arabidopsis thaliana
Descriptor: calmodulin-related protein, putative
Authors:Song, J, Zhao, Q, Thao, S, Frederick, R.O, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2004-06-02
Release date:2004-08-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Letter to the Editor: Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana
J.Biomol.NMR, 30, 2004
2ASQ
DownloadVisualize
BU of 2asq by Molmil
Solution Structure of SUMO-1 in Complex with a SUMO-binding Motif (SBM)
Descriptor: Protein inhibitor of activated STAT2, Small ubiquitin-related modifier 1
Authors:Song, J, Zhang, Z, Hu, W, Chen, Y.
Deposit date:2005-08-23
Release date:2005-10-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Small Ubiquitin-like Modifier (SUMO) Recognition of a SUMO Binding Motif: A reversal of the bound orientation
J.Biol.Chem., 280, 2005
2FFT
DownloadVisualize
BU of 2fft by Molmil
NMR structure of Spinach Thylakoid Soluble Phosphoprotein of 9 kDa in SDS Micelles
Descriptor: thylakoid soluble phosphoprotein
Authors:Song, J, Carlberg, I, Lee, M.S, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2005-12-20
Release date:2006-01-17
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Micelle-induced folding of spinach thylakoid soluble phosphoprotein of 9 kDa and its functional implications.
Biochemistry, 45, 2006
2ETT
DownloadVisualize
BU of 2ett by Molmil
Solution Structure of Human Sorting Nexin 22 PX Domain
Descriptor: Sorting nexin-22
Authors:Song, J, Zhao, Q, Tyler, R.C, Lee, M.S, Newman, C.L, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2005-10-27
Release date:2005-11-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of human sorting nexin 22.
Protein Sci., 16, 2007
4ZDS
DownloadVisualize
BU of 4zds by Molmil
Crystal Structure of core DNA binding domain of Arabidopsis Thaliana Transcription Factor Ethylene-Insensitive 3
Descriptor: Protein ETHYLENE INSENSITIVE 3
Authors:Song, J, Zhu, C, Zhang, X, Wen, X, Liu, L, Peng, J, Guo, H, Yi, C.
Deposit date:2015-04-18
Release date:2015-09-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Biochemical and Structural Insights into the Mechanism of DNA Recognition by Arabidopsis ETHYLENE INSENSITIVE3.
Plos One, 10, 2015
3PTA
DownloadVisualize
BU of 3pta by Molmil
Crystal structure of human DNMT1(646-1600) in complex with DNA
Descriptor: DNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3'), DNA (cytosine-5)-methyltransferase 1, ...
Authors:Song, J, Patel, D.J.
Deposit date:2010-12-02
Release date:2010-12-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structure of DNMT1-DNA complex reveals a role for autoinhibition in maintenance DNA methylation.
Science, 331, 2011
3PT9
DownloadVisualize
BU of 3pt9 by Molmil
Crystal structure of mouse DNMT1(731-1602) in the free state
Descriptor: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION
Authors:Song, J, Patel, D.J.
Deposit date:2010-12-02
Release date:2010-12-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of DNMT1-DNA complex reveals a role for autoinhibition in maintenance DNA methylation.
Science, 331, 2011
2JWN
DownloadVisualize
BU of 2jwn by Molmil
Solution NMR structure of the protease-resistent domain of Xenopus laevis ePABP2
Descriptor: Embryonic polyadenylate-binding protein 2-B
Authors:Song, J, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2007-10-16
Release date:2007-10-30
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural basis for RNA recognition by a type II poly(A)-binding protein.
Proc.Natl.Acad.Sci.USA, 105, 2008
2KGG
DownloadVisualize
BU of 2kgg by Molmil
Solution Structure of JARID1A C-terminal PHD finger
Descriptor: Histone demethylase JARID1A, ZINC ION
Authors:Song, J, Wang, Z, Patel, D.J.
Deposit date:2009-03-11
Release date:2009-05-05
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger.
Nature, 459, 2009
2KGI
DownloadVisualize
BU of 2kgi by Molmil
Solution structure of JARID1A C-terminal PHD finger in complex with H3(1-9)K4me3
Descriptor: H3(1-9)K4me3, Histone demethylase JARID1A, ZINC ION
Authors:Song, J, Wang, Z, Patel, D.J.
Deposit date:2009-03-12
Release date:2009-05-05
Last modified:2020-02-26
Method:SOLUTION NMR
Cite:Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger.
Nature, 459, 2009
2JMU
DownloadVisualize
BU of 2jmu by Molmil
NMR structure of the mouse thiamine triphosphatase
Descriptor: Thiamine-triphosphatase
Authors:Song, J, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2006-12-05
Release date:2006-12-19
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Structural basis for the catalytic mechanism of mammalian 25-kDa thiamine triphosphatase.
J.Biol.Chem., 283, 2008
4J2J
DownloadVisualize
BU of 4j2j by Molmil
Crystal structure of AXH domain complex with Capicua
Descriptor: Ataxin-1, Protein capicua homolog
Authors:Song, J.-J, Kim, E.
Deposit date:2013-02-04
Release date:2013-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of protein complex formation and reconfiguration by polyglutamine disease protein Ataxin-1 and Capicua
Genes Dev., 27, 2013
2JU4
DownloadVisualize
BU of 2ju4 by Molmil
NMR structure of the gamma subunit of cGMP phosphodiesterase
Descriptor: (3'R)-1'-oxyl-2',2',5',5'-tetramethyl-1,3'-bipyrrolidine-2,5-dione, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma
Authors:Song, J, Guo, L.W, Ruoho, A.E, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2007-08-14
Release date:2007-10-16
Last modified:2020-02-19
Method:SOLUTION NMR
Cite:Intrinsically disordered gamma-subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure.
Proc.Natl.Acad.Sci.USA, 105, 2008
2M0O
DownloadVisualize
BU of 2m0o by Molmil
The solution structure of human PHF1 in complex with H3K36me3
Descriptor: H3K36me3 peptide, PHD finger protein 1
Authors:Song, J, Patel, D.J.
Deposit date:2012-10-30
Release date:2013-01-16
Last modified:2013-02-27
Method:SOLUTION NMR
Cite:An H3K36 Methylation-Engaging Tudor Motif of Polycomb-like Proteins Mediates PRC2 Complex Targeting.
Mol.Cell, 49, 2013
7EKR
DownloadVisualize
BU of 7ekr by Molmil
The crystal structure of Orange carotenoid binding protein 1 (OCP1)
Descriptor: Orange carotenoid protein, beta,beta-carotene-4,4'-dione
Authors:Song, J.J, Yoon, J.
Deposit date:2021-04-06
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Color-Tuning Mechanism of the Lit Form of Orange Carotenoid Protein.
Mol.Cells, 46, 2023
4J2L
DownloadVisualize
BU of 4j2l by Molmil
Crystal Structure of AXH domain complexed with Capicua
Descriptor: Ataxin-1, Protein capicua homolog
Authors:Song, J.-J, Kim, E.
Deposit date:2013-02-04
Release date:2013-04-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural basis of protein complex formation and reconfiguration by polyglutamine disease protein Ataxin-1 and Capicua
Genes Dev., 27, 2013
2KU7
DownloadVisualize
BU of 2ku7 by Molmil
Solution structure of MLL1 PHD3-Cyp33 RRM chimeric protein
Descriptor: MLL1 PHD3-Cyp33 RRM chimeric protein
Authors:Song, J, Wang, Z, Patel, D.
Deposit date:2010-02-12
Release date:2010-07-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression.
Cell(Cambridge,Mass.), 141, 2010
1BAH
DownloadVisualize
BU of 1bah by Molmil
A TWO DISULFIDE DERIVATIVE OF CHARYBDOTOXIN WITH DISULFIDE 13-33 REPLACED BY TWO ALPHA-AMINOBUTYRIC ACIDS, NMR, 30 STRUCTURES
Descriptor: CHARYBDOTOXIN
Authors:Song, J, Gilquin, B, Jamin, N, Guenneugues, M, Dauplais, M, Vita, C, Menez, A.
Deposit date:1996-06-06
Release date:1997-01-11
Last modified:2020-01-15
Method:SOLUTION NMR
Cite:NMR solution structure of a two-disulfide derivative of charybdotoxin: structural evidence for conservation of scorpion toxin alpha/beta motif and its hydrophobic side chain packing.
Biochemistry, 36, 1997
8FYH
DownloadVisualize
BU of 8fyh by Molmil
G4 RNA-mediated PRC2 dimer
Descriptor: G4 RNA, Histone-binding protein RBBP4, Histone-lysine N-methyltransferase EZH2, ...
Authors:Song, J, Kasinath, V.
Deposit date:2023-01-26
Release date:2023-10-04
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for inactivation of PRC2 by G-quadruplex RNA.
Science, 381, 2023
5EXH
DownloadVisualize
BU of 5exh by Molmil
Crystal structure of mTET3-CXXC domain in complex with 5-carboxylcytosine DNA at 1.3 Angstroms resolution.
Descriptor: DNA (5'-D(*GP*AP*AP*TP*CP*(1CC)P*GP*GP*AP*TP*TP*C)-3'), Methylcytosine dioxygenase TET3, ZINC ION
Authors:Song, J.
Deposit date:2015-11-23
Release date:2016-02-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Tet3 Reads 5-Carboxylcytosine through Its CXXC Domain and Is a Potential Guardian against Neurodegeneration.
Cell Rep, 14, 2016
5XBK
DownloadVisualize
BU of 5xbk by Molmil
Crystal structure of human Importin4
Descriptor: Importin-4, histone H3
Authors:Song, J.J, Yoon, J.
Deposit date:2017-03-20
Release date:2018-02-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.223 Å)
Cite:Integrative Structural Investigation on the Architecture of Human Importin4_Histone H3/H4_Asf1a Complex and Its Histone H3 Tail Binding
J. Mol. Biol., 430, 2018
5HDA
DownloadVisualize
BU of 5hda by Molmil
Crystal Structure of the BS69 coiled coil-MYND domains bound to an EBNA2 PXLXP motif
Descriptor: Epstein-Barr nuclear antigen 2, ZINC ION, Zinc finger MYND domain-containing protein 11
Authors:Song, J, Harter, M.
Deposit date:2016-01-05
Release date:2016-01-20
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.3899 Å)
Cite:BS69/ZMYND11 C-Terminal Domains Bind and Inhibit EBNA2.
Plos Pathog., 12, 2016
5XAH
DownloadVisualize
BU of 5xah by Molmil
Crystal structure of human Importin4
Descriptor: Importin-4
Authors:Song, J.J, Yoon, J.
Deposit date:2017-03-13
Release date:2018-02-14
Last modified:2018-04-11
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:Integrative Structural Investigation on the Architecture of Human Importin4_Histone H3/H4_Asf1a Complex and Its Histone H3 Tail Binding
J. Mol. Biol., 430, 2018
6JRP
DownloadVisualize
BU of 6jrp by Molmil
Crystal structure of CIC-HMG-ETV5-DNA complex
Descriptor: DNA (5'-D(*AP*TP*GP*AP*AP*TP*GP*AP*AP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*TP*CP*AP*TP*TP*CP*AP*T)-3'), Protein capicua homolog
Authors:Song, J.J, Lee, H.
Deposit date:2019-04-05
Release date:2019-07-31
Last modified:2020-01-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:The crystal structure of Capicua HMG-box domain complexed with the ETV5-DNA and its implications for Capicua-mediated cancers.
Febs J., 286, 2019

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon