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PDB: 627 results

4KPQ
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BU of 4kpq by Molmil
Structure and receptor binding specificity of the hemagglutinin H13 from avian influenza A virus H13N6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin
Authors:Lu, X, Qi, J, Shi, Y, Gao, G.
Deposit date:2013-05-14
Release date:2013-07-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structure and Receptor Binding Specificity of Hemagglutinin H13 from Avian Influenza A Virus H13N6
J.Virol., 87, 2013
3SIP
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BU of 3sip by Molmil
Crystal structure of drICE and dIAP1-BIR1 complex
Descriptor: Apoptosis 1 inhibitor, Caspase, ZINC ION
Authors:Li, X, Wang, J, Shi, Y.
Deposit date:2011-06-20
Release date:2011-08-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.496 Å)
Cite:Structural mechanisms of DIAP1 auto-inhibition and DIAP1-mediated inhibition of drICE.
Nat Commun, 2, 2011
4LNP
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BU of 4lnp by Molmil
The first SH3 domain from CAP/Ponsin in complex with proline rich peptide from Vinculin
Descriptor: Sorbin and SH3 domain-containing protein 1, Vinculin
Authors:Zhao, D, Li, F, Wu, J, Shi, Y, Zhang, Z, Gong, Q.
Deposit date:2013-07-11
Release date:2014-05-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Structural investigation of the interaction between the tandem SH3 domains of c-Cbl-associated protein and vinculin
J.Struct.Biol., 187, 2014
4LN2
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BU of 4ln2 by Molmil
The second SH3 domain from CAP/Ponsin in complex with proline rich peptide from Vinculin
Descriptor: Sorbin and SH3 domain-containing protein 1, proline rich peptide
Authors:Zhao, D, Li, F, Wu, J, Shi, Y, Zhang, Z, Gong, Q.
Deposit date:2013-07-11
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural investigation of the interaction between the tandem SH3 domains of c-Cbl-associated protein and vinculin
J.Struct.Biol., 187, 2014
7TA8
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BU of 7ta8 by Molmil
NMR structure of crosslinked cyclophilin A
Descriptor: Peptidyl-prolyl cis-trans isomerase A
Authors:Lu, M, Toptygin, D, Xiang, Y, Shi, Y, Schwieters, C.D, Lipinski, E.C, Ahn, J, Byeon, I.-J.L, Gronenborn, A.M.
Deposit date:2021-12-20
Release date:2022-06-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Magic of Linking Rings: Discovery of a Unique Photoinduced Fluorescent Protein Crosslink.
J.Am.Chem.Soc., 144, 2022
4H32
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BU of 4h32 by Molmil
The crystal structure of the hemagglutinin H17 derived the bat influenza A virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin
Authors:Sun, X, Shi, Y, Lu, X, He, J, Gao, F, Yan, J, Qi, J, Gao, G.F.
Deposit date:2012-09-13
Release date:2013-07-10
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Bat-derived influenza hemagglutinin H17 does not bind canonical avian or human receptors and most likely uses a unique entry mechanism.
Cell Rep, 3, 2013
7BCS
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BU of 7bcs by Molmil
ASCT2 in the presence of the inhibitor Lc-BPE (position "down") in the outward-open conformation.
Descriptor: (2~{S},4~{S})-4-(4-phenylphenyl)carbonyloxypyrrolidine-2-carboxylic acid, Neutral amino acid transporter B(0)
Authors:Garibsingh, R.A, Ndaru, E, Garaeva, A.A, Shi, Y, Zielewicz, L, Bonomi, M, Slotboom, D.J, Paulino, C, Grewer, C, Schlessinger, A.
Deposit date:2020-12-21
Release date:2021-09-22
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:Rational design of ASCT2 inhibitors using an integrated experimental-computational approach.
Proc.Natl.Acad.Sci.USA, 118, 2021
5WVE
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BU of 5wve by Molmil
Apaf-1-Caspase-9 holoenzyme
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Apoptotic protease-activating factor 1, Caspase, ...
Authors:Li, Y, Zhou, M, Hu, Q, Shi, Y.
Deposit date:2016-12-24
Release date:2017-02-08
Last modified:2017-03-01
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Mechanistic insights into caspase-9 activation by the structure of the apoptosome holoenzyme
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5ELH
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BU of 5elh by Molmil
Crystal structure of mouse Unkempt zinc fingers 1-3 (ZnF1-3), bound to RNA
Descriptor: RING finger protein unkempt homolog, RNA (5'-R(*UP*UP*AP*UP*U)-3'), SULFATE ION, ...
Authors:Teplova, M, Murn, J, Zarnack, K, Shi, Y, Patel, D.J.
Deposit date:2015-11-04
Release date:2015-12-09
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Recognition of distinct RNA motifs by the clustered CCCH zinc fingers of neuronal protein Unkempt.
Nat.Struct.Mol.Biol., 23, 2016
5ELK
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BU of 5elk by Molmil
Crystal structure of mouse Unkempt zinc fingers 4-6 (ZnF4-6), bound to RNA
Descriptor: RING finger protein unkempt homolog, RNA, ZINC ION
Authors:Teplova, M, Murn, J, Zarnack, K, Shi, Y, Patel, D.J.
Deposit date:2015-11-04
Release date:2015-12-09
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Recognition of distinct RNA motifs by the clustered CCCH zinc fingers of neuronal protein Unkempt.
Nat.Struct.Mol.Biol., 23, 2016
5F1B
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BU of 5f1b by Molmil
Structural basis of Ebola virus entry: viral glycoprotein bound to its endosomal receptor Niemann-Pick C1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GP1, GP2, ...
Authors:Wang, H, Shi, Y, Song, J, Qi, J, Lu, G, Yan, J, Gao, G.F.
Deposit date:2015-11-30
Release date:2016-01-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ebola Viral Glycoprotein Bound to Its Endosomal Receptor Niemann-Pick C1.
Cell, 164, 2016
5F18
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BU of 5f18 by Molmil
Structural basis of Ebola virus entry: viral glycoprotein bound to its endosomal receptor Niemann-Pick C1
Descriptor: Niemann-Pick C1 protein
Authors:Wang, H, Shi, Y, Song, J, Qi, J, Lu, G, Yan, J, Gao, G.F.
Deposit date:2015-11-30
Release date:2016-01-20
Last modified:2016-01-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ebola Viral Glycoprotein Bound to Its Endosomal Receptor Niemann-Pick C1.
Cell, 164, 2016
5XLP
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BU of 5xlp by Molmil
Anti-CRISPR proteins AcrF1/2 bound to Csy surveillance complex with a 20nt spacer crRNA backbone region
Descriptor: CRISPR-associated protein Csy3, Uncharacterized protein AcrF1, crRNA with 20nt spacer sequence
Authors:Peng, R, Shi, Y, Gao, G.F.
Deposit date:2017-05-11
Release date:2018-01-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Alternate binding modes of anti-CRISPR viral suppressors AcrF1/2 to Csy surveillance complex revealed by cryo-EM structures.
Cell Res., 27, 2017
5XLO
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BU of 5xlo by Molmil
Anti-CRISPR proteins AcrF1/2 bound to Csy surveillance complex with a 32nt spacer crRNA backbone region
Descriptor: CRISPR-associated protein Csy3, Uncharacterized protein AcrF1, crRNA with 32nt spacer sequence
Authors:Peng, R, Shi, Y, Gao, G.F.
Deposit date:2017-05-11
Release date:2018-01-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Alternate binding modes of anti-CRISPR viral suppressors AcrF1/2 to Csy surveillance complex revealed by cryo-EM structures.
Cell Res., 27, 2017
4HYG
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BU of 4hyg by Molmil
Structure of a presenilin family intramembrane aspartate protease in C222 space group
Descriptor: Putative uncharacterized protein
Authors:Li, X, Dang, S, Yan, C, Wang, J, Shi, Y.
Deposit date:2012-11-13
Release date:2012-12-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.32 Å)
Cite:Structure of a presenilin family intramembrane aspartate protease
Nature, 493, 2013
4JTX
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BU of 4jtx by Molmil
Crystal structure of 2009 pandemic influenza virus hemagglutinin mutant D225E
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin
Authors:Zhang, W, Shi, Y, Qi, J, Gao, F, Li, Q, Fan, Z, Yan, J, Gao, G.F.
Deposit date:2013-03-24
Release date:2013-05-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.997 Å)
Cite:Molecular basis of the receptor binding specificity switch of the hemagglutinins from both the 1918 and 2009 pandemic influenza A viruses by a D225G substitution
J.Virol., 87, 2013
4JUG
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BU of 4jug by Molmil
Crystal structure of 1918 pandemic influenza virus hemagglutinin mutant D225G
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Zhang, W, Shi, Y, Qi, J, Gao, F, Li, Q, Fan, Z, Yan, J, Gao, G.F.
Deposit date:2013-03-24
Release date:2013-05-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis of the receptor binding specificity switch of the hemagglutinins from both the 1918 and 2009 pandemic influenza A viruses by a D225G substitution
J.Virol., 87, 2013
4JU0
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BU of 4ju0 by Molmil
Crystal structure of 2009 pandemic influenza virus hemagglutinin mutant D225E complexed with human receptor analogue LSTc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ...
Authors:Zhang, W, Shi, Y, Qi, J, Gao, F, Li, Q, Fan, Z, Yan, J, Gao, G.F.
Deposit date:2013-03-24
Release date:2013-05-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.908 Å)
Cite:Molecular basis of the receptor binding specificity switch of the hemagglutinins from both the 1918 and 2009 pandemic influenza A viruses by a D225G substitution
J.Virol., 87, 2013
4JTV
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BU of 4jtv by Molmil
Crystal structure of 2009 pandemic influenza virus hemagglutinin complexed with human receptor analogue LSTc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ...
Authors:Zhang, W, Shi, Y, Qi, J, Gao, F, Li, Q, Fan, Z, Yan, J, Gao, G.F.
Deposit date:2013-03-24
Release date:2013-05-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.997 Å)
Cite:Molecular basis of the receptor binding specificity switch of the hemagglutinins from both the 1918 and 2009 pandemic influenza A viruses by a D225G substitution
J.Virol., 87, 2013
7EVO
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BU of 7evo by Molmil
The cryo-EM structure of the human 17S U2 snRNP
Descriptor: HIV Tat-specific factor 1, PHD finger-like domain-containing protein 5A, RNA helicase, ...
Authors:Zhang, X, Zhan, X, Shi, Y.
Deposit date:2021-05-21
Release date:2022-08-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural insights into branch site proofreading by human spliceosome.
Nat.Struct.Mol.Biol., 2024
4M66
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BU of 4m66 by Molmil
Crystal structure of the mouse RIP3 kinase domain
Descriptor: Receptor-interacting serine/threonine-protein kinase 3
Authors:Xie, T, Peng, W, Yan, C, Wu, J, Shi, Y.
Deposit date:2013-08-09
Release date:2013-10-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Structural Insights into RIP3-Mediated Necroptotic Signaling
Cell Rep, 5, 2013
4M67
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BU of 4m67 by Molmil
Crystal structure of the human MLKL kinase-like domain
Descriptor: Mixed lineage kinase domain-like protein
Authors:Xie, T, Peng, W, Yan, C, Wu, J, Shi, Y.
Deposit date:2013-08-09
Release date:2013-10-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Insights into RIP3-Mediated Necroptotic Signaling
Cell Rep, 5, 2013
4M69
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BU of 4m69 by Molmil
Crystal structure of the mouse RIP3-MLKL complex
Descriptor: CHLORIDE ION, MAGNESIUM ION, Mixed lineage kinase domain-like protein, ...
Authors:Xie, T, Peng, W, Yan, C, Wu, J, Shi, Y.
Deposit date:2013-08-09
Release date:2013-10-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.497 Å)
Cite:Structural Insights into RIP3-Mediated Necroptotic Signaling
Cell Rep, 5, 2013
5WZG
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BU of 5wzg by Molmil
Structure of APUM23-GAAUUGACGG
Descriptor: Pumilio homolog 23, RNA (5'-R(*GP*AP*AP*UP*UP*GP*AP*CP*GP*G)-3')
Authors:Bao, H, Wang, N, Wang, C, Jiang, Y, Wu, J, Shi, Y.
Deposit date:2017-01-18
Release date:2017-09-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural basis for the specific recognition of 18S rRNA by APUM23.
Nucleic Acids Res., 45, 2017
5WZJ
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BU of 5wzj by Molmil
Structure of APUM23-GGAUUUGACGG
Descriptor: Pumilio homolog 23, RNA (5'-R(*GP*GP*AP*UP*UP*UP*GP*AP*CP*GP*G)-3')
Authors:Bao, H, Wang, N, Wang, C, Jiang, Y, Wu, J, Shi, Y.
Deposit date:2017-01-18
Release date:2017-09-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Structural basis for the specific recognition of 18S rRNA by APUM23.
Nucleic Acids Res., 45, 2017

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