Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 68 results

5JHL
DownloadVisualize
BU of 5jhl by Molmil
Crystal structure of zika virus envelope protein in complex with a flavivirus broadly-protective antibody
Descriptor: Antibody Heavy chain, antibody Light chain, envelope protein
Authors:Dai, L, Shi, Y, Qi, J, Gao, G.F.
Deposit date:2016-04-21
Release date:2016-05-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of the Zika Virus Envelope Protein and Its Complex with a Flavivirus Broadly Protective Antibody.
Cell Host Microbe, 19, 2016
7W5S
DownloadVisualize
BU of 7w5s by Molmil
A nonheme iron- and alpha-ketoglutarate- dependent halogenase that catalyzes nucleotide substrates
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, FE (II) ION, ...
Authors:Dai, L.H, Zhang, X, Hu, Y.M, Huang, J.W, Chen, C.C, Guo, R.T.
Deposit date:2021-11-30
Release date:2022-04-13
Last modified:2022-05-25
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structural and Functional Insights into a Nonheme Iron- and alpha-Ketoglutarate-Dependent Halogenase That Catalyzes Chlorination of Nucleotide Substrates.
Appl.Environ.Microbiol., 88, 2022
7W5V
DownloadVisualize
BU of 7w5v by Molmil
A nonheme iron- and alpha-ketoglutarate- dependent halogenase that catalyzes nucleotide substrates
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, FE (III) ION, ...
Authors:Dai, L.H, Zhang, X, Hu, Y.M, Huang, J.W, Chen, C.C, Guo, R.T.
Deposit date:2021-11-30
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural and Functional Insights into a Nonheme Iron- and alpha-Ketoglutarate-Dependent Halogenase That Catalyzes Chlorination of Nucleotide Substrates.
Appl.Environ.Microbiol., 88, 2022
5JHM
DownloadVisualize
BU of 5jhm by Molmil
Crystal structure of Zika virus Envelope protein
Descriptor: Envelope protein
Authors:Dai, L, Shi, Y, Qi, J, Gao, G.F.
Deposit date:2016-04-21
Release date:2016-05-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of the Zika Virus Envelope Protein and Its Complex with a Flavivirus Broadly Protective Antibody.
Cell Host Microbe, 19, 2016
7FIR
DownloadVisualize
BU of 7fir by Molmil
The crystal structure of beta-1,2-mannobiose phosphorylase in complex with 1,4-mannobiose
Descriptor: Beta-1,2-mannobiose phosphorylase, PENTAETHYLENE GLYCOL, TRIETHYLENE GLYCOL, ...
Authors:Dai, L, Chang, Z, Yang, J, Liu, W, Yang, Y, Chen, C.-C, Zhang, L, Huang, J, Sun, Y, Guo, R.-T.
Deposit date:2021-08-01
Release date:2022-01-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural investigation of a thermostable 1,2-beta-mannobiose phosphorylase from Thermoanaerobacter sp. X-514.
Biochem.Biophys.Res.Commun., 579, 2021
7W5T
DownloadVisualize
BU of 7w5t by Molmil
A nonheme iron- and alpha-ketoglutarate- dependent halogenase that catalyzes nucleotide substrates
Descriptor: 2-OXOGLUTARIC ACID, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Dai, L.H, Zhang, X, Hu, Y.M, Huang, J.W, Chen, C.C, Guo, R.T.
Deposit date:2021-11-30
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural and Functional Insights into a Nonheme Iron- and alpha-Ketoglutarate-Dependent Halogenase That Catalyzes Chlorination of Nucleotide Substrates.
Appl.Environ.Microbiol., 88, 2022
3JTS
DownloadVisualize
BU of 3jts by Molmil
GY9-Mamu-A*02-hb2m
Descriptor: Beta-2-microglobulin, MHC class I Mamu-A*02, peptide of Gag-Pol polyprotein
Authors:Dai, L, Feng, Y, Qi, J, Gao, G.F.
Deposit date:2009-09-14
Release date:2010-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Structure of Mamu A*2
To be Published
3JTT
DownloadVisualize
BU of 3jtt by Molmil
Cystal structure of Rhesus macaque MHC class I:Mamu-A*02
Descriptor: Beta-2-microglobulin, MHC class I Mamu-A*02, peptide of Protein Nef
Authors:Dai, L, Feng, Y, Qi, J, Gao, G.F.
Deposit date:2009-09-14
Release date:2010-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of Rhesus macaque MHC class I:Mamu-A*02
To be Published
7DLX
DownloadVisualize
BU of 7dlx by Molmil
crystal structure of H2AM4>Z-H2B
Descriptor: Histone H2B,Histone H2A
Authors:Dai, L.C, Zhou, Z.
Deposit date:2020-11-30
Release date:2021-06-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.395 Å)
Cite:Recognition of the inherently unstable H2A nucleosome by Swc2 is a major determinant for unidirectional H2A.Z exchange.
Cell Rep, 35, 2021
7FIQ
DownloadVisualize
BU of 7fiq by Molmil
The crystal structure of mannose-bound beta-1,2-mannobiose phosphorylase from Thermoanaerobacter sp.
Descriptor: Beta-1,2-mannobiose phosphorylase, GLYCEROL, PENTAETHYLENE GLYCOL, ...
Authors:Dai, L, Chang, Z, Yang, J, Liu, W, Yang, Y, Chen, C.-C, Zhang, L, Huang, J, Sun, Y, Guo, R.-T.
Deposit date:2021-08-01
Release date:2022-01-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structural investigation of a thermostable 1,2-beta-mannobiose phosphorylase from Thermoanaerobacter sp. X-514.
Biochem.Biophys.Res.Commun., 579, 2021
7FIP
DownloadVisualize
BU of 7fip by Molmil
The native structure of beta-1,2-mannobiose phosphorylase from Thermoanaerobacter sp.
Descriptor: Beta-1,2-mannobiose phosphorylase, ZINC ION
Authors:Dai, L, Chang, Z, Yang, J, Liu, W, Yang, Y, Chen, C.-C, Zhang, L, Huang, J, Sun, Y, Guo, R.-T.
Deposit date:2021-08-01
Release date:2022-01-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structural investigation of a thermostable 1,2-beta-mannobiose phosphorylase from Thermoanaerobacter sp. X-514.
Biochem.Biophys.Res.Commun., 579, 2021
7FIS
DownloadVisualize
BU of 7fis by Molmil
The crystal structure of beta-1,2-mannobiose phosphorylase in complex with mannose 1-phosphate (M1P)
Descriptor: 1-O-phosphono-alpha-D-mannopyranose, Beta-1,2-mannobiose phosphorylase, GLYCEROL, ...
Authors:Dai, L, Chang, Z, Yang, J, Liu, W, Yang, Y, Chen, C.-C, Zhang, L, Huang, J, Sun, Y, Guo, R.-T.
Deposit date:2021-08-01
Release date:2022-01-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural investigation of a thermostable 1,2-beta-mannobiose phosphorylase from Thermoanaerobacter sp. X-514.
Biochem.Biophys.Res.Commun., 579, 2021
8HF8
DownloadVisualize
BU of 8hf8 by Molmil
Human PPAR delta ligand binding domain in complex with a synthetic agonist V1
Descriptor: 2-[4-[[2,5-bis(oxidanylidene)-3-[4-(trifluoromethyl)phenyl]imidazolidin-1-yl]methyl]-2,6-dimethyl-phenoxy]-2-methyl-propanoic acid, Peroxisome proliferator-activated receptor delta, octyl beta-D-glucopyranoside
Authors:Dai, L, Sun, H.B, Yuan, H.L, Feng, Z.Q.
Deposit date:2022-11-09
Release date:2023-09-06
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Discovery of the First Subnanomolar PPAR alpha / delta Dual Agonist for the Treatment of Cholestatic Liver Diseases.
J.Med.Chem., 66, 2023
8IHQ
DownloadVisualize
BU of 8ihq by Molmil
Cryo-EM structure of ochratoxin A-detoxifying amidohydrolase ADH3
Descriptor: Amidohydrolase family protein, ZINC ION
Authors:Dai, L.H, Niu, D, Huang, J.-W, Li, X, Shen, P.P, Li, H, Hu, Y.M, Yang, Y, Chen, C.-C, Guo, R.-T.
Deposit date:2023-02-23
Release date:2023-08-30
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Cryo-EM structure and rational engineering of a superefficient ochratoxin A-detoxifying amidohydrolase.
J Hazard Mater, 458, 2023
8IHS
DownloadVisualize
BU of 8ihs by Molmil
Cryo-EM structure of ochratoxin A-detoxifying amidohydrolase ADH3 in complex with ochratoxin A
Descriptor: (2~{S})-2-[[(3~{R})-5-chloranyl-3-methyl-8-oxidanyl-1-oxidanylidene-3,4-dihydroisochromen-7-yl]carbonylamino]-3-phenyl-propanoic acid, Amidohydrolase family protein, ZINC ION
Authors:Dai, L.H, Niu, D, Huang, J.-W, Li, X, Shen, P.P, Li, H, Hu, Y.M, Yang, Y, Chen, C.-C, Guo, R.-T.
Deposit date:2023-02-23
Release date:2023-08-30
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Cryo-EM structure and rational engineering of a superefficient ochratoxin A-detoxifying amidohydrolase.
J Hazard Mater, 458, 2023
8IHR
DownloadVisualize
BU of 8ihr by Molmil
Cryo-EM structure of ochratoxin A-detoxifying amidohydrolase ADH3 in complex with Phe
Descriptor: Amidohydrolase family protein, PHENYLALANINE, ZINC ION
Authors:Dai, L.H, Niu, D, Huang, J.-W, Li, X, Shen, P.P, Li, H, Hu, Y.M, Yang, Y, Chen, C.-C, Guo, R.-T.
Deposit date:2023-02-23
Release date:2023-08-30
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Cryo-EM structure and rational engineering of a superefficient ochratoxin A-detoxifying amidohydrolase.
J Hazard Mater, 458, 2023
8J85
DownloadVisualize
BU of 8j85 by Molmil
Cryo-EM structure of ochratoxin A-detoxifying amidohydrolase ADH3 mutant S88E in complex with ochratoxin A
Descriptor: (2~{S})-2-[[(3~{R})-5-chloranyl-3-methyl-8-oxidanyl-1-oxidanylidene-3,4-dihydroisochromen-7-yl]carbonylamino]-3-phenyl-propanoic acid, Amidohydrolase family protein, ZINC ION
Authors:Dai, L.H, Niu, D, Huang, J.-W, Li, X, Shen, P.P, Li, H, Hu, Y.M, Yang, Y, Chen, C.-C, Guo, R.-T.
Deposit date:2023-04-30
Release date:2023-08-30
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM structure and rational engineering of a superefficient ochratoxin A-detoxifying amidohydrolase.
J Hazard Mater, 458, 2023
7W0G
DownloadVisualize
BU of 7w0g by Molmil
Human PPAR delta ligand binding domain in complex with a synthetic agonist H11
Descriptor: 2-[2,6-dimethyl-4-[[5-oxidanylidene-4-[4-(trifluoromethyloxy)phenyl]-1,2,4-triazol-1-yl]methyl]phenoxy]-2-methyl-propanoic acid, Peroxisome proliferator-activated receptor delta
Authors:Dai, L, Sun, H.B, Yuan, H.L, Feng, Z.Q.
Deposit date:2021-11-18
Release date:2022-02-02
Last modified:2022-02-23
Method:X-RAY DIFFRACTION (2.443 Å)
Cite:Design, Synthesis, and Biological Evaluation of Triazolone Derivatives as Potent PPAR alpha / delta Dual Agonists for the Treatment of Nonalcoholic Steatohepatitis.
J.Med.Chem., 65, 2022
7C02
DownloadVisualize
BU of 7c02 by Molmil
Crystal structure of dimeric MERS-CoV receptor binding domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Dai, L, Qi, J, Gao, G.F.
Deposit date:2020-04-30
Release date:2020-07-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:A Universal Design of Betacoronavirus Vaccines against COVID-19, MERS, and SARS.
Cell, 182, 2020
7BQ5
DownloadVisualize
BU of 7bq5 by Molmil
ZIKV sE bound to mAb Z6
Descriptor: Z6 Light Chain, Z6 heavy chain, envelope protein
Authors:Dai, L, Qi, J, Gao, G.F.
Deposit date:2020-03-24
Release date:2021-03-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Protective Zika vaccines engineered to eliminate enhancement of dengue infection via immunodominance switch.
Nat.Immunol., 22, 2021
7BPK
DownloadVisualize
BU of 7bpk by Molmil
Zika virus envelope protein mutant bound to mAb
Descriptor: Envelope protein, IG c307_light_IGLV1-51_IGLJ2, Z3L1 Heavy chain
Authors:Dai, L, Qi, J, Gao, G.F.
Deposit date:2020-03-23
Release date:2021-03-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Protective Zika vaccines engineered to eliminate enhancement of dengue infection via immunodominance switch.
Nat.Immunol., 22, 2021
7XWI
DownloadVisualize
BU of 7xwi by Molmil
structure of patulin-detoxifying enzyme with NADPH
Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Short-chain dehydrogenase/reductase
Authors:Dai, L, Li, H, Hu, Y, Guo, R.T, Chen, C.C.
Deposit date:2022-05-26
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structure-based rational design of a short-chain dehydrogenase/reductase for improving activity toward mycotoxin patulin
Int.J.Biol.Macromol., 222, 2022
7XWJ
DownloadVisualize
BU of 7xwj by Molmil
structure of patulin-detoxifying enzyme Y155F with NADPH
Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Short-chain dehydrogenase/reductase
Authors:Dai, L, Li, H, Hu, Y, Guo, R.T, Chen, C.C.
Deposit date:2022-05-26
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structure-based rational design of a short-chain dehydrogenase/reductase for improving activity toward mycotoxin patulin
Int.J.Biol.Macromol., 222, 2022
7XWK
DownloadVisualize
BU of 7xwk by Molmil
structure of patulin-detoxifying enzyme Y155F with NADPH and substrate
Descriptor: (4~{S})-4-oxidanyl-4,6-dihydrofuro[3,2-c]pyran-2-one, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Short-chain dehydrogenase/reductase
Authors:Dai, L, Li, H, Hu, Y, Guo, R.T, Chen, C.C.
Deposit date:2022-05-26
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structure-based rational design of a short-chain dehydrogenase/reductase for improving activity toward mycotoxin patulin
Int.J.Biol.Macromol., 222, 2022
7XWN
DownloadVisualize
BU of 7xwn by Molmil
structure of patulin-detoxifying enzyme Y155F/V187K with NADPH and substrate
Descriptor: (4~{S})-4-oxidanyl-4,6-dihydrofuro[3,2-c]pyran-2-one, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Short-chain dehydrogenase/reductase
Authors:Dai, L, Li, H, Hu, Y, Guo, R.T, Chen, C.C.
Deposit date:2022-05-26
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-based rational design of a short-chain dehydrogenase/reductase for improving activity toward mycotoxin patulin
Int.J.Biol.Macromol., 222, 2022

 

123>

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon