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PDB: 121 results

5KKB
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BU of 5kkb by Molmil
Structure of mouse Golgi alpha-1,2-mannosidase IA and Man9GlcNAc2-PA complex
Descriptor: 1,4-BUTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, ...
Authors:Xiang, Y, Moremen, K.W.
Deposit date:2016-06-21
Release date:2016-12-07
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.774 Å)
Cite:Substrate recognition and catalysis by GH47 alpha-mannosidases involved in Asn-linked glycan maturation in the mammalian secretory pathway.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
4U0L
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Structure of the Vibrio cholerae di-nucleotide cyclase (DncV) mutant D131A-D133A
Descriptor: Cyclic AMP-GMP synthase
Authors:Xiang, Y, Zhu, D.Y.
Deposit date:2014-07-12
Release date:2014-09-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Biochemistry of a Vibrio cholerae Dinucleotide Cyclase Reveals Cyclase Activity Regulation by Folates.
Mol.Cell, 55, 2014
4U0N
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BU of 4u0n by Molmil
Structure of the Vibrio cholerae di-nucleotide cyclase (DncV) deletion mutant D-loop
Descriptor: Cyclic AMP-GMP synthase, MAGNESIUM ION, N-[4-({[(6S)-2-amino-5-methyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-gamma-glutamyl-L-glutamic acid
Authors:Xiang, Y, Zhu, D.Y.
Deposit date:2014-07-12
Release date:2014-09-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Structural Biochemistry of a Vibrio cholerae Dinucleotide Cyclase Reveals Cyclase Activity Regulation by Folates.
Mol.Cell, 55, 2014
1P9G
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BU of 1p9g by Molmil
Crystal structure of a novel antifungal protein distinct with five disulfide bridges from Ecommia ulmoides Oliver at atomic resolution
Descriptor: ACETATE ION, EAFP 2
Authors:Xiang, Y, Huang, R.H, Liu, X.Z, Wang, D.C.
Deposit date:2003-05-12
Release date:2004-06-01
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (0.84 Å)
Cite:Crystal structure of a novel antifungal protein distinct with five disulfide bridges from Eucommia ulmoides Oliver at an atomic resolution.
J.Struct.Biol., 148, 2004
1T7B
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BU of 1t7b by Molmil
Crystal structure of mutant Lys8Gln of scorpion alpha-like neurotoxin BmK M1 from Buthus martensii Karsch
Descriptor: Alpha-like neurotoxin BmK-I
Authors:Xiang, Y, Guan, R.J, He, X.L, Wang, C.G, Wang, M, Zhang, Y, Sundberg, E.J, Wang, D.C.
Deposit date:2004-05-09
Release date:2004-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Mechanism Governing Cis and Trans Isomeric States and an Intramolecular Switch for Cis/Trans Isomerization of a Non-proline Peptide Bond Observed in Crystal Structures of Scorpion Toxins
J.Mol.Biol., 341, 2004
1T7A
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BU of 1t7a by Molmil
Crystal structure of mutant Lys8Asp of scorpion alpha-like neurotoxin BmK M1 from Buthus martensii Karsch
Descriptor: Alpha-like neurotoxin BmK-I
Authors:Xiang, Y, Guan, R.J, He, X.L, Wang, C.G, Wang, M, Zhang, Y, Sundberg, E.J, Wang, D.C.
Deposit date:2004-05-08
Release date:2004-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Mechanism Governing Cis and Trans Isomeric States and an Intramolecular Switch for Cis/Trans Isomerization of a Non-proline Peptide Bond Observed in Crystal Structures of Scorpion Toxins
J.Mol.Biol., 341, 2004
1T7E
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BU of 1t7e by Molmil
Crystal structure of mutant Pro9Ser of scorpion alpha-like neurotoxin BmK M1 from Buthus martensii Karsch
Descriptor: Alpha-like neurotoxin BmK-I, PHOSPHATE ION
Authors:Xiang, Y, Guan, R.J, He, X.L, Wang, C.G, Wang, M, Zhang, Y, Sundberg, E.J, Wang, D.C.
Deposit date:2004-05-09
Release date:2004-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Mechanism Governing Cis and Trans Isomeric States and an Intramolecular Switch for Cis/Trans Isomerization of a Non-proline Peptide Bond Observed in Crystal Structures of Scorpion Toxins
J.Mol.Biol., 341, 2004
8J1V
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BU of 8j1v by Molmil
Cryo-EM structure of SARS-CoV2 Omicron BA.5 spike in complex with 8-9D Fabs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 8-9D heavy chain, 8-9D light chain, ...
Authors:Xiang, Y, Li, R.
Deposit date:2023-04-13
Release date:2023-11-29
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:A lung-selective delivery of mRNA encoding broadly neutralizing antibody against SARS-CoV-2 infection.
Nat Commun, 14, 2023
8J1T
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BU of 8j1t by Molmil
Local refined cryo-EM structure of Omicron BA.5 RBD in complex with 8-9D Fab
Descriptor: 8-9D heavy chain, 8-9D light chain, Spike protein
Authors:Xiang, Y, Li, R.
Deposit date:2023-04-13
Release date:2023-11-29
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:A lung-selective delivery of mRNA encoding broadly neutralizing antibody against SARS-CoV-2 infection.
Nat Commun, 14, 2023
8IXL
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BU of 8ixl by Molmil
top segment of the bacteriophage M13 mini variant
Descriptor: Capsid protein G8P, Tail virion protein G7P, Tail virion protein G9P
Authors:Xiang, Y, Jia, Q.
Deposit date:2023-04-01
Release date:2023-09-13
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8JWT
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BU of 8jwt by Molmil
Asymmetric middle segment of the bacteriophage M13 mini variant
Descriptor: Capsid protein G8P
Authors:Xiang, Y, Jia, Q.
Deposit date:2023-06-29
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8JWX
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BU of 8jwx by Molmil
bottom segment of the bacteriophage M13 mini variant
Descriptor: Attachment protein G3P, Capsid protein G8P, Head virion protein G6P
Authors:Xiang, Y, Jia, Q.
Deposit date:2023-06-29
Release date:2024-01-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of a bacteriophage M13 mini variant
To Be Published
8JWW
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BU of 8jww by Molmil
top segment of the bacteriophage M13 mini variant
Descriptor: Capsid protein G8P, Tail virion protein G7P, Tail virion protein G9P
Authors:Xiang, Y, Jia, Q.
Deposit date:2023-06-29
Release date:2024-01-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structure of a bacteriophage M13 mini variant
To Be Published
8IXJ
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BU of 8ixj by Molmil
Middle segment of the bacteriophage M13 mini variant
Descriptor: Capsid protein G8P
Authors:Xiang, Y, Jia, Q.
Deposit date:2023-04-01
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8IXK
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BU of 8ixk by Molmil
bottom segment of the bacteriophage M13 mini variant
Descriptor: Attachment protein G3P, Capsid protein G8P, Head virion protein G6P
Authors:Xiang, Y, Jia, Q.
Deposit date:2023-04-01
Release date:2023-09-13
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
3SUC
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BU of 3suc by Molmil
Crystal structure of the pre-mature bacteriophage phi29 gene product 12
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ...
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2011-07-11
Release date:2011-08-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystallographic Insights Into the Autocatalytic Assembly Mechanism of a Bacteriophage Tail Spike
Mol.Cell, 34, 2009
3R04
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BU of 3r04 by Molmil
The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors
Descriptor: 5-{6-[(trans-4-aminocyclohexyl)amino]pyrazin-2-yl}-1-benzofuran-2-carboxylic acid, IMIDAZOLE, Proto-oncogene serine/threonine-protein kinase pim-1
Authors:Xiang, Y, Hirth, B, Asmussen, G, Biemann, H.-P, Good, A, Fitzgerald, M, Gladysheva, T, Jancsics, K, Liu, J, Metz, M, Papoulis, A, Skerlj, R, Stepp, D.J, Wei, R.R.
Deposit date:2011-03-07
Release date:2011-05-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors.
Bioorg.Med.Chem.Lett., 21, 2011
7WC0
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BU of 7wc0 by Molmil
Crystal structure of Fab region of TAU-2212 neutralizing SARS-CoV-2
Descriptor: TAU-2212 Heavy chain, TAU-2212 Light chain
Authors:Xiang, Y, Li, R, Ma, B.
Deposit date:2021-12-17
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.705 Å)
Cite:Conformational flexibility in neutralization of SARS-CoV-2 by naturally elicited anti-SARS-CoV-2 antibodies.
Commun Biol, 5, 2022
5Y66
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BU of 5y66 by Molmil
Crystal structure of Pseudomonas fluorescens Kynurenine 3-monooxygenase in complex with L-KYN and Ro61-8048
Descriptor: (2S)-2-amino-4-(2-aminophenyl)-4-oxobutanoic acid, 3,4-dimethoxy-N-[4-(3-nitrophenyl)-1,3-thiazol-2-yl]benzenesulfonamide, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Xiang, Y, Gao, J.J, Zhu, D.Y.
Deposit date:2017-08-10
Release date:2017-12-27
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Biochemistry and structural studies of kynurenine 3-monooxygenase reveal allosteric inhibition by Ro 61-8048
FASEB J., 32, 2018
5Y7A
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BU of 5y7a by Molmil
Crystal structure of Pseudomonas fluorescens Kynurenine 3-monooxygenase in complex with L-KYN
Descriptor: (2S)-2-amino-4-(2-aminophenyl)-4-oxobutanoic acid, FLAVIN-ADENINE DINUCLEOTIDE, Kynurenine 3-monooxygenase
Authors:Xiang, Y, Gao, J.J, Zhu, D.Y.
Deposit date:2017-08-16
Release date:2017-12-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.846 Å)
Cite:Biochemistry and structural studies of kynurenine 3-monooxygenase reveal allosteric inhibition by Ro 61-8048
FASEB J., 32, 2018
5Y77
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BU of 5y77 by Molmil
Crystal structure of Pseudomonas fluorescens Kynurenine 3-monooxygenase in complex with L-KYN (seMet derivative)
Descriptor: (2S)-2-amino-4-(2-aminophenyl)-4-oxobutanoic acid, FLAVIN-ADENINE DINUCLEOTIDE, Kynurenine 3-monooxygenase
Authors:Xiang, Y, Gao, J.J, Zhu, D.Y.
Deposit date:2017-08-16
Release date:2017-12-27
Last modified:2018-04-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Biochemistry and structural studies of kynurenine 3-monooxygenase reveal allosteric inhibition by Ro 61-8048
FASEB J., 32, 2018
7Y42
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BU of 7y42 by Molmil
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein in complex with all-trans retinoic acid
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, RETINOIC ACID, Spike glycoprotein
Authors:Xiang, Y, Wang, L.
Deposit date:2022-06-13
Release date:2022-07-06
Last modified:2022-09-14
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:A Retinol Derivative Inhibits SARS-CoV-2 Infection by Interrupting Spike-Mediated Cellular Entry.
Mbio, 13, 2022
3GQ7
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BU of 3gq7 by Molmil
Crystal Structure of the Bacteriophage Phi29 Gene Product 12 N-terminal Fragment
Descriptor: CALCIUM ION, CARBONATE ION, MAGNESIUM ION, ...
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2009-03-24
Release date:2009-05-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike.
Mol.Cell, 34, 2009
3GQ8
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BU of 3gq8 by Molmil
Crystal Structure of the Bacteriophage phi29 gene product 12 N-terminal fragment in complex with 2-(N-cyclohexylamino)ethane sulfonic acid (CHES)
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CALCIUM ION, CARBONATE ION, ...
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2009-03-24
Release date:2009-05-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike.
Mol.Cell, 34, 2009
3GQA
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Crystal Structure of the Bacteriophage phi29 gene product 12 N-terminal fragment in complex with cobalt ions
Descriptor: COBALT (II) ION, PHOSPHATE ION, Preneck appendage protein
Authors:Xiang, Y, Rossmann, M.G.
Deposit date:2009-03-24
Release date:2009-05-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike.
Mol.Cell, 34, 2009

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