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PDB: 1328 件
7BSV
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BU of 7bsv by Molmil
Cryo-EM structure of a human ATP11C-CDC50A flippase in PtdSer-occluded E2-AlF state
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ATP11C, CDC50A, ...
著者Abe, K, Nishizawa, T, Nakanishi, H.
登録日2020-03-31
公開日2020-09-30
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Transport Cycle of Plasma Membrane Flippase ATP11C by Cryo-EM.
Cell Rep, 32, 2020
7BSW
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BU of 7bsw by Molmil
Cryo-EM structure of a human ATP11C-CDC50A flippase in PtdEtn-occluded E2-AlF state
分子名称: 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, ATP11C, ...
著者Abe, K, Nishizawa, T, Nakanishi, H.
登録日2020-03-31
公開日2020-09-30
最終更新日2020-10-14
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Transport Cycle of Plasma Membrane Flippase ATP11C by Cryo-EM.
Cell Rep, 32, 2020
5EGH
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BU of 5egh by Molmil
Structure of ENPP6, a choline-specific glycerophosphodiester-phosphodiesterase in complex with phosphocholine
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Morita, J, Kano, K, Kato, K, Takita, H, Ishitani, R, Nishimasu, H, Nureki, O, Aoki, J.
登録日2015-10-27
公開日2016-03-09
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.803 Å)
主引用文献Structure and biological function of ENPP6, a choline-specific glycerophosphodiester-phosphodiesterase
Sci Rep, 6, 2016
5EGE
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BU of 5ege by Molmil
Structure of ENPP6, a choline-specific glycerophosphodiester-phosphodiesterase
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Morita, J, Kano, K, Kato, K, Takita, H, Ishitani, R, Nishimasu, H, Nureki, O, Aoki, J.
登録日2015-10-27
公開日2016-03-09
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and biological function of ENPP6, a choline-specific glycerophosphodiester-phosphodiesterase
Sci Rep, 6, 2016
5X2J
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BU of 5x2j by Molmil
Crystal structure of a recombinant hybrid manganese superoxide dismutase from Staphylococcus equorum and Staphylococcus saprophyticus
分子名称: MANGANESE (II) ION, manganese superoxide dismutase
著者Retnoningrum, D.S, Yoshida, H, Arumsari, S, Kamitori, S, Ismaya, W.T.
登録日2017-01-31
公開日2018-01-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献The first crystal structure of manganese superoxide dismutase from the genus Staphylococcus
Acta Crystallogr F Struct Biol Commun, 74, 2018
3VIR
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BU of 3vir by Molmil
Crystal strcture of Swi5 from fission yeast
分子名称: Mating-type switching protein swi5, octyl beta-D-glucopyranoside
著者Kuwabara, N, Yamada, N, Hashimoto, H, Sato, M, Iwasaki, H, Shimizu, T.
登録日2011-10-06
公開日2012-08-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Mechanistic insights into the activation of Rad51-mediated strand exchange from the structure of a recombination activator, the Swi5-Sfr1 complex
Structure, 20, 2012
3VIQ
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BU of 3viq by Molmil
Crystal structure of Swi5-Sfr1 complex from fission yeast
分子名称: GLYCEROL, Mating-type switching protein swi5, NITRATE ION, ...
著者Kuwabara, N, Murayama, Y, Hashimoto, H, Kokabu, Y, Ikeguchi, M, Sato, M, Mayanagi, K, Tsutsui, Y, Iwasaki, H, Shimizu, T.
登録日2011-10-06
公開日2012-08-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mechanistic insights into the activation of Rad51-mediated strand exchange from the structure of a recombination activator, the Swi5-Sfr1 complex
Structure, 20, 2012
5EO8
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BU of 5eo8 by Molmil
Crystal structure of AOL(868)
分子名称: Predicted protein, methyl 1-seleno-beta-L-fucopyranoside
著者Kato, R, Kiso, M, Ishida, H, Ando, H, Suzuki, T, Shimabukuro, S, Makyio, H.
登録日2015-11-10
公開日2016-06-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Six independent fucose-binding sites in the crystal structure of Aspergillus oryzae lectin
Biochem.Biophys.Res.Commun., 477, 2016
5EO7
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BU of 5eo7 by Molmil
Crystal structure of AOL
分子名称: Predicted protein, SULFATE ION, methyl 1-seleno-alpha-L-fucopyranoside
著者Kato, R, Kiso, M, Ishida, H, Ando, H, Suzuki, T, Shimabukuro, S, Makyio, H.
登録日2015-11-10
公開日2016-06-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Six independent fucose-binding sites in the crystal structure of Aspergillus oryzae lectin
Biochem.Biophys.Res.Commun., 477, 2016
3AUP
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BU of 3aup by Molmil
Crystal structure of Basic 7S globulin from soybean
分子名称: Basic 7S globulin
著者Yoshizawa, T, Shimizu, T, Taichi, M, Nishiuchi, Y, Yamabe, M, Shichijo, N, Unzai, S, Hirano, H, Sato, M, Hashimoto, H.
登録日2011-02-14
公開日2011-04-27
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Crystal structure of basic 7S globulin, a xyloglucan-specific endo-beta-1,4-glucanase inhibitor protein-like protein from soybean lacking inhibitory activity against endo-beta-glucanase
Febs J., 278, 2011
7Y8P
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BU of 7y8p by Molmil
Crystal structure of 4'-selenoRNA duplex
分子名称: COBALT HEXAMMINE(III), RNA (5'-R(*GP*GP*AP*(IKS)P*(ILK)P*(IKS)P*GP*AP*GP*UP*CP*C)-3')
著者Kondo, J, Minakawa, N, Ohta, M, Takahashi, H, Tarashima, N.
登録日2022-06-24
公開日2023-05-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Synthesis and properties of fully-modified 4'-selenoRNA, an endonuclease-resistant RNA analog.
Bioorg.Med.Chem., 76, 2022
6LKN
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BU of 6lkn by Molmil
Crystal structure of ATP11C-CDC50A in PtdSer-bound E2P state
分子名称: 1-deoxy-alpha-D-mannopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Cell cycle control protein 50A, ...
著者Abe, K, Irie, K, Nakanishi, H, Hasegawa, K.
登録日2019-12-19
公開日2020-06-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.9 Å)
主引用文献Crystal structure of a human plasma membrane phospholipid flippase.
J.Biol.Chem., 295, 2020
7BSP
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BU of 7bsp by Molmil
Cryo-EM structure of a human ATP11C-CDC50A flippase in E1-AMPPCP state
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, ATP11C, ...
著者Abe, K, Nishizawa, T, Nakanishi, H.
登録日2020-03-31
公開日2020-09-30
最終更新日2020-10-14
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Transport Cycle of Plasma Membrane Flippase ATP11C by Cryo-EM.
Cell Rep, 32, 2020
3VU7
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BU of 3vu7 by Molmil
Crystal structure of REV1-REV7-REV3 ternary complex
分子名称: DNA polymerase zeta catalytic subunit, DNA repair protein REV1, Mitotic spindle assembly checkpoint protein MAD2B
著者Kikuchi, S, Hara, K, Shimizu, T, Sato, M, Hashimoto, H.
登録日2012-06-20
公開日2012-08-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis of recruitment of DNA polymerase [zeta] by interaction between REV1 and REV7 proteins
J.Biol.Chem., 287, 2012
2ZVK
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BU of 2zvk by Molmil
Crystal structure of PCNA in complex with DNA polymerase eta fragment
分子名称: DNA polymerase eta, Proliferating cell nuclear antigen
著者Hishiki, A, Hashimoto, H, Hanafusa, T, Kamei, K, Ohashi, E, Shimizu, T, Ohmori, H, Sato, M.
登録日2008-11-11
公開日2009-02-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural Basis for Novel Interactions between Human Translesion Synthesis Polymerases and Proliferating Cell Nuclear Antigen
J.Biol.Chem., 284, 2009
5H6N
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BU of 5h6n by Molmil
DNA targeting ADP-ribosyltransferase Pierisin-1, autoinhibitory form
分子名称: Pierisin-1
著者Oda, T, Hirabayashi, H, Shikauchi, G, Takamura, R, Hiraga, K, Minami, H, Hashimoto, H, Yamamoto, M, Wakabayashi, K, Sugimura, T, Shimizu, T, Sato, M.
登録日2016-11-14
公開日2017-08-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of autoinhibition and activation of the DNA-targeting ADP-ribosyltransferase pierisin-1
J. Biol. Chem., 292, 2017
2ZVM
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BU of 2zvm by Molmil
Crystal structure of PCNA in complex with DNA polymerase iota fragment
分子名称: DNA polymerase iota, Proliferating cell nuclear antigen
著者Hishiki, A, Hashimoto, H, Hanafusa, T, Kamei, K, Ohashi, E, Shimizu, T, Ohmori, H, Sato, M.
登録日2008-11-11
公開日2009-02-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Basis for Novel Interactions between Human Translesion Synthesis Polymerases and Proliferating Cell Nuclear Antigen
J.Biol.Chem., 284, 2009
2ZVL
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BU of 2zvl by Molmil
Crystal structure of PCNA in complex with DNA polymerase kappa fragment
分子名称: DNA polymerase kappa, Proliferating cell nuclear antigen, SULFATE ION, ...
著者Hishiki, A, Hashimoto, H, Hanafusa, T, Kamei, K, Ohashi, E, Shimizu, T, Ohmori, H, Sato, M.
登録日2008-11-11
公開日2009-02-10
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Basis for Novel Interactions between Human Translesion Synthesis Polymerases and Proliferating Cell Nuclear Antigen
J.Biol.Chem., 284, 2009
5H6K
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BU of 5h6k by Molmil
DNA targeting ADP-ribosyltransferase Pierisin-1
分子名称: 1,2-ETHANEDIOL, Pierisin-1
著者Oda, T, Hirabayashi, H, Shikauchi, G, Takamura, R, Hiraga, K, Minami, H, Hashimoto, H, Yamamoto, M, Wakabayashi, K, Sugimura, T, Shimizu, T, Sato, M.
登録日2016-11-14
公開日2017-08-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of autoinhibition and activation of the DNA-targeting ADP-ribosyltransferase pierisin-1
J. Biol. Chem., 292, 2017
5H6L
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BU of 5h6l by Molmil
DNA targeting ADP-ribosyltransferase Pierisin-1 in complex with beta-NAD+
分子名称: 1,2-ETHANEDIOL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Pierisin-1
著者Oda, T, Hirabayashi, H, Shikauchi, G, Takamura, R, Hiraga, K, Minami, H, Hashimoto, H, Yamamoto, M, Wakabayashi, K, Sugimura, T, Shimizu, T, Sato, M.
登録日2016-11-14
公開日2017-08-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis of autoinhibition and activation of the DNA-targeting ADP-ribosyltransferase pierisin-1
J. Biol. Chem., 292, 2017
5H6M
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BU of 5h6m by Molmil
DNA targeting ADP-ribosyltransferase Pierisin-1
分子名称: 1,2-ETHANEDIOL, Pierisin-1
著者Oda, T, Hirabayashi, H, Shikauchi, G, Takamura, R, Hiraga, K, Minami, H, Hashimoto, H, Yamamoto, M, Wakabayashi, K, Sugimura, T, Shimizu, T, Sato, M.
登録日2016-11-14
公開日2017-08-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis of autoinhibition and activation of the DNA-targeting ADP-ribosyltransferase pierisin-1
J. Biol. Chem., 292, 2017
2ZFD
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BU of 2zfd by Molmil
The crystal structure of plant specific calcium binding protein AtCBL2 in complex with the regulatory domain of AtCIPK14
分子名称: ACETIC ACID, CALCIUM ION, Calcineurin B-like protein 2, ...
著者Akaboshi, M, Hashimoto, H, Ishida, H, Koizumi, N, Sato, M, Shimizu, T.
登録日2007-12-29
公開日2008-02-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献The crystal structure of plant-specific calcium-binding protein AtCBL2 in complex with the regulatory domain of AtCIPK14
J.Mol.Biol., 377, 2008
6LS1
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BU of 6ls1 by Molmil
Ribonuclease from Hericium erinaceus active and GMP binding form
分子名称: DI(HYDROXYETHYL)ETHER, GUANOSINE, Ribonuclease T1, ...
著者Takebe, K, Suzuki, M, Sangawa, T, Kobayashi, H, Itagaki, T.
登録日2020-01-16
公開日2021-01-20
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Ribonuclease from Hericium erinaceus active and GMP binding form
To Be Published
5H6J
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BU of 5h6j by Molmil
DNA targeting ADP-ribosyltransferase Pierisin-1 in complex with beta-NAD+
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Pierisin-1
著者Oda, T, Hirabayashi, H, Shikauchi, G, Takamura, R, Hiraga, K, Minami, H, Hashimoto, H, Yamamoto, M, Wakabayashi, K, Sugimura, T, Shimizu, T, Sato, M.
登録日2016-11-14
公開日2017-08-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis of autoinhibition and activation of the DNA-targeting ADP-ribosyltransferase pierisin-1
J. Biol. Chem., 292, 2017
4DVZ
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BU of 4dvz by Molmil
Crystal structure of the Helicobacter pylori CagA oncoprotein
分子名称: Cytotoxicity-associated immunodominant antigen
著者Hayashi, T, Senda, M, Morohashi, H, Higashi, H, Horio, M, Kashiba, Y, Nagase, L, Sasaya, D, Shimizu, T, Venugopalan, N, Kumeta, H, Noda, N, Inagaki, F, Senda, T, Hatakeyama, M.
登録日2012-02-23
公開日2012-07-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.19 Å)
主引用文献Tertiary structure-function analysis reveals the pathogenic signaling potentiation mechanism of Helicobacter pylori oncogenic effector CagA
Cell Host Microbe, 12, 2012

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