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PDB: 354 件
5WTT
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BU of 5wtt by Molmil
Structure of the 093G9 Fab in complex with the epitope peptide
分子名称: Epitope peptide of Cyr61, Heavy chain of 093G9 Fab, Light chain of 093G9 Fab
著者Zhong, C, Hu, K, Shen, J, Ding, J.
登録日2016-12-14
公開日2017-12-20
最終更新日2019-01-02
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular basis for the recognition of CCN1 by monoclonal antibody 093G9.
J. Mol. Recognit., 30, 2017
5H2F
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BU of 5h2f by Molmil
Crystal structure of the PsbM-deletion mutant of photosystem II
分子名称: (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Uto, S, Kawakami, K, Umena, Y, Iwai, M, Ikeuchi, M, Shen, J.R, Kamiya, N.
登録日2016-10-15
公開日2017-03-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mutual relationships between structural and functional changes in a PsbM-deletion mutant of photosystem II.
Faraday Discuss., 198, 2017
7Y3F
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BU of 7y3f by Molmil
Structure of the Anabaena PSI-monomer-IsiA supercomplex
分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
著者Nagao, R, Kato, K, Hamaguchi, T, Kawakami, K, Yonekura, K, Shen, J.R.
登録日2022-06-10
公開日2023-03-01
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (2.62 Å)
主引用文献Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120.
Nat Commun, 14, 2023
6IRI
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BU of 6iri by Molmil
Crystal structure of the minor ferredoxin from Thermosynechococcus elongatus
分子名称: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin, SULFATE ION
著者Motomura, T, Shen, J.R, Umena, Y.
登録日2018-11-13
公開日2019-09-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献An alternative plant-like cyanobacterial ferredoxin with unprecedented structural and functional properties.
Biochim Biophys Acta Bioenerg, 1860, 2019
7BV1
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BU of 7bv1 by Molmil
Cryo-EM structure of the apo nsp12-nsp7-nsp8 complex
分子名称: Non-structural protein 7, Non-structural protein 8, RNA-directed RNA polymerase, ...
著者Yin, W, Mao, C, Luan, X, Shen, D, Shen, Q, Su, H, Wang, X, Zhou, F, Zhao, W, Gao, M, Chang, S, Xie, Y.C, Tian, G, Jiang, H.W, Tao, S.C, Shen, J, Jiang, Y, Jiang, H, Xu, Y, Zhang, S, Zhang, Y, Xu, H.E.
登録日2020-04-09
公開日2020-04-22
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structural basis for inhibition of the RNA-dependent RNA polymerase from SARS-CoV-2 by remdesivir.
Science, 368, 2020
6WY2
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BU of 6wy2 by Molmil
Crystal structure of RNA-10mer: CCGG(N4-methyl-C)GCCGG
分子名称: MAGNESIUM ION, POTASSIUM ION, RNA-10mer: CCGG(4-methyl-C)GCCGG
著者Sekula, B, Ruszkowski, M, Mao, S, Haruehanroengra, P, Sheng, J.
登録日2020-05-12
公開日2020-09-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.928 Å)
主引用文献Base pairing, structural and functional insights into N4-methylcytidine (m4C) and N4,N4-dimethylcytidine (m42C) modified RNA.
Nucleic Acids Res., 48, 2020
6WSH
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BU of 6wsh by Molmil
Crystal structure of EutV from Enterococcus faecalis
分子名称: GLYCEROL, MAGNESIUM ION, Response regulator, ...
著者Ataide, S.F, Walshe, J.L.
登録日2020-05-01
公開日2021-05-05
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Structural characterization of the ANTAR antiterminator domain bound to RNA.
Nucleic Acids Res., 50, 2022
6A2W
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BU of 6a2w by Molmil
Crystal structure of fucoxanthin chlorophyll a/c complex from Phaeodactylum tricornutum
分子名称: (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Wang, W, Yu, L.J, Kuang, T.Y, Shen, J.R.
登録日2018-06-13
公開日2019-02-06
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for blue-green light harvesting and energy dissipation in diatoms.
Science, 363, 2019
5H49
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BU of 5h49 by Molmil
Crystal structure of Cbln1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cerebellin-1
著者Zhong, C, Shen, J, Zhang, H, Ding, J.
登録日2016-10-31
公開日2017-09-13
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Cbln1 and Cbln4 Are Structurally Similar but Differ in GluD2 Binding Interactions.
Cell Rep, 20, 2017
5X3V
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BU of 5x3v by Molmil
Structure of human SHMT2 protein mutant
分子名称: SULFATE ION, Serine hydroxymethyltransferase, mitochondrial
著者Li, J, Sheng, J.
登録日2017-02-09
公開日2018-02-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structure of human SHMT2 protein mutant
To Be Published
7D1T
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BU of 7d1t by Molmil
Cryo-EM Structure of PSII at 1.95 angstrom resolution
分子名称: (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Kato, K, Miyazaki, N, Hamaguchi, T, Nakajima, Y, Akita, F, Yonekura, K, Shen, J.R.
登録日2020-09-15
公開日2021-03-31
最終更新日2021-04-07
実験手法ELECTRON MICROSCOPY (1.95 Å)
主引用文献High-resolution cryo-EM structure of photosystem II reveals damage from high-dose electron beams.
Commun Biol, 4, 2021
7D1U
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BU of 7d1u by Molmil
Cryo-EM Structure of PSII at 2.08 angstrom resolution
分子名称: (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Kato, K, Miyazaki, N, Hamaguchi, T, Nakajima, Y, Akita, F, Yonekura, K, Shen, J.R.
登録日2020-09-15
公開日2021-03-31
最終更新日2021-04-07
実験手法ELECTRON MICROSCOPY (2.08 Å)
主引用文献High-resolution cryo-EM structure of photosystem II reveals damage from high-dose electron beams.
Commun Biol, 4, 2021
7EDA
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BU of 7eda by Molmil
Structure of monomeric photosystem II
分子名称: (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Yu, H, Hamaguchi, T, Nakajima, Y, Kato, K, kawakami, K, Akita, F, Yonekura, K, Shen, J.R.
登録日2021-03-15
公開日2021-07-07
最終更新日2021-08-04
実験手法ELECTRON MICROSCOPY (2.78 Å)
主引用文献Cryo-EM structure of monomeric photosystem II at 2.78 angstrom resolution reveals factors important for the formation of dimer.
Biochim Biophys Acta Bioenerg, 1862, 2021
5H48
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BU of 5h48 by Molmil
Crystal structure of Cbln1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Cerebellin-1
著者Zhong, C, Shen, J, Zhang, H, Ding, J.
登録日2016-10-31
公開日2017-09-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Cbln1 and Cbln4 Are Structurally Similar but Differ in GluD2 Binding Interactions.
Cell Rep, 20, 2017
5H4C
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BU of 5h4c by Molmil
Crystal structure of Cbln4
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Protein Cbln4
著者Zhong, C, Shen, J, Zhang, H, Ding, J.
登録日2016-10-31
公開日2017-09-06
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Cbln1 and Cbln4 Are Structurally Similar but Differ in GluD2 Binding Interactions.
Cell Rep, 20, 2017
6TAS
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BU of 6tas by Molmil
Structure of the two-fold capsomer of the dArc1 capsid
分子名称: Activity-regulated cytoskeleton associated protein 1, ZINC ION
著者Erlendsson, S, Morado, D.R, Shepherd, J.D, Briggs, J.A.G.
登録日2019-10-30
公開日2020-01-01
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献Structures of virus-like capsids formed by the Drosophila neuronal Arc proteins.
Nat.Neurosci., 23, 2020
6TAQ
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BU of 6taq by Molmil
Structure of the dArc2 capsid
分子名称: Activity-regulated cytoskeleton associated protein 2
著者Erlendsson, S, Morado, D.R, Shepherd, J.D, Briggs, J.A.G.
登録日2019-10-30
公開日2020-01-01
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structures of virus-like capsids formed by the Drosophila neuronal Arc proteins.
Nat.Neurosci., 23, 2020
6TAU
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BU of 6tau by Molmil
Structure of the two-fold capsomer of the dArc2 capsid
分子名称: Activity-regulated cytoskeleton associated protein 2
著者Erlendsson, S, Morado, D.R, Shepherd, J.D, Briggs, J.A.G.
登録日2019-10-30
公開日2020-01-01
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structures of virus-like capsids formed by the Drosophila neuronal Arc proteins.
Nat.Neurosci., 23, 2020
6TAR
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BU of 6tar by Molmil
Structure of the five-fold capsomer of the dArc1 capsid
分子名称: Activity-regulated cytoskeleton associated protein 1
著者Erlendsson, S, Morado, D.R, Shepherd, J.D, Briggs, J.A.G.
登録日2019-10-30
公開日2020-01-01
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structures of virus-like capsids formed by the Drosophila neuronal Arc proteins.
Nat.Neurosci., 23, 2020
6TAT
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BU of 6tat by Molmil
Structure of the five-fold capsomer of the dArc2 capsid
分子名称: Activity-regulated cytoskeleton associated protein 2
著者Erlendsson, S, Morado, D.R, Shepherd, J.D, Briggs, J.A.G.
登録日2019-10-30
公開日2020-01-01
最終更新日2022-03-30
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structures of virus-like capsids formed by the Drosophila neuronal Arc proteins.
Nat.Neurosci., 23, 2020
6K33
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BU of 6k33 by Molmil
Structure of PSI-isiA supercomplex from Thermosynechococcus vulcanus
分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
著者Akita, F, Nagao, R, Kato, K, Shen, J.R, Miyazaki, N.
登録日2019-05-16
公開日2020-05-20
最終更新日2020-05-27
実験手法ELECTRON MICROSCOPY (2.74 Å)
主引用文献Structure of a cyanobacterial photosystem I surrounded by octadecameric IsiA antenna proteins.
Commun Biol, 3, 2020
8AP1
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BU of 8ap1 by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with two GTP molecules poised for de novo initiation (IC2)
分子名称: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Goovaerts, Q, Shen, J, Patel, S.S, Das, K.
登録日2022-08-09
公開日2023-08-23
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (3.47 Å)
主引用文献Structures illustrate step-by-step mitochondrial transcription initiation.
Nature, 622, 2023
8ATV
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BU of 8atv by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 5-mer RNA, pppGpGpApApA (IC5)
分子名称: DNA (36-MER), DNA-directed RNA polymerase, mitochondrial, ...
著者Goovaerts, Q, Shen, J, Patel, S.S, Das, K.
登録日2022-08-24
公開日2023-08-30
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (3.39 Å)
主引用文献Structures illustrate step-by-step mitochondrial transcription initiation.
Nature, 622, 2023
8ATW
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BU of 8atw by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 6-mer RNA, pppGpGpApApApU (IC6)
分子名称: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Goovaerts, Q, Shen, J, Patel, S.S, Das, K.
登録日2022-08-24
公開日2023-08-30
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (3.62 Å)
主引用文献Structures illustrate step-by-step mitochondrial transcription initiation.
Nature, 622, 2023
8ATT
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BU of 8att by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 4-mer RNA, pppGpGpUpA (IC4)
分子名称: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Goovaerts, Q, Shen, J, Patel, S.S, Das, K.
登録日2022-08-24
公開日2023-08-30
最終更新日2023-11-01
実験手法ELECTRON MICROSCOPY (3.44 Å)
主引用文献Structures illustrate step-by-step mitochondrial transcription initiation.
Nature, 622, 2023

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