PDB Search results for query - Protein Data Bank Japan

PDB: 87 results

Structure of Aurora Kinase A in complex with activator peptide
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, Peptide from Centrosomal protein of 192 kDa,Aurora kinase A
Authors:	Lee, I.-G, Park, J.
Deposit date:	2022-09-13
Release date:	2023-05-31
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Structural basis for CEP192-mediated regulation of centrosomal AURKA. Sci Adv, 9, 2023

5G1E

The complex structure of syntenin-1 PDZ domain with c-terminal extension
Descriptor:	SYNTENIN-1
Authors:	Lee, I, Kim, H, Yun, J.H, Lee, W.
Deposit date:	2016-03-25
Release date:	2016-11-23
Last modified:	2017-07-12
Method:	X-RAY DIFFRACTION (1.92 Å)
Cite:	New Structural Insight of C-Terminal Region of Syntenin-1, Enhancing the Molecular Dimerization and Inhibitory Function Related on Syndecan-4 Signaling. Sci.Rep., 6, 2016

5G1D

The complex structure of syntenin-1 PDZ domain with c-terminal extension
Descriptor:	SYNDECAN-4, SYNTENIN-1
Authors:	Lee, I, Kim, H, Yun, J.H, Lee, W.
Deposit date:	2016-03-25
Release date:	2016-11-23
Last modified:	2017-07-12
Method:	X-RAY DIFFRACTION (2.81 Å)
Cite:	New Structural Insight of C-Terminal Region of Syntenin-1, Enhancing the Molecular Dimerization and Inhibitory Function Related on Syndecan-4 Signaling. Sci.Rep., 6, 2016

4ZG0

Crystal structure of Mouse Syndesmos protein
Descriptor:	Protein syndesmos
Authors:	Lee, I, Kim, H, Yoo, J, Cho, H, Lee, W.
Deposit date:	2015-04-22
Release date:	2016-04-20
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.006 Å)
Cite:	Crystal structure of syndesmos and its interaction with Syndecan-4 proteoglycan Biochem.Biophys.Res.Commun., 463, 2015

5JS4

Crystal structure of phiAB6 tailspike
Descriptor:	MALONIC ACID, phiAB6 tailspike
Authors:	Lee, I.M, Tu, I.F, Huang, K.F, Wu, S.H.
Deposit date:	2016-05-07
Release date:	2017-03-08
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (1.48 Å)
Cite:	Structural basis for fragmenting the exopolysaccharide of Acinetobacter baumannii by bacteriophage Phi AB6 tailspike protein Sci Rep, 7, 2017

5JSE

Crystal structure of phiAB6 tailspike in complex with three-repeated oligosaccharides of Acinetobacter baumannii surface polysaccharide
Descriptor:	ACETIC ACID, MALONIC ACID, beta-D-galactopyranose-(1-3)-2-amino-2-deoxy-beta-D-galactopyranose-(1-3)-[5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-non-2-ulopyranosonic acid-(2-6)-beta-D-glucopyranose-(1-6)]beta-D-galactopyranose-(1-3)-2-amino-2-deoxy-beta-D-galactopyranose-(1-3)-[beta-D-glucopyranose-(1-6)]beta-D-galactopyranose, ...
Authors:	Lee, I.M, Tu, I.F, Huang, K.F, Wu, S.H.
Deposit date:	2016-05-08
Release date:	2017-03-08
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (1.89 Å)
Cite:	Structural basis for fragmenting the exopolysaccharide of Acinetobacter baumannii by bacteriophage Phi AB6 tailspike protein Sci Rep, 7, 2017

5JSD

Crystal structure of phiAB6 tailspike in complex with five-repeated oligosaccharides of Acinetobacter baumannii surface polysaccharide
Descriptor:	ACETIC ACID, MALONIC ACID, beta-D-galactopyranose-(1-3)-2-amino-2-deoxy-beta-D-galactopyranose-(1-3)-[5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-non-2-ulopyranosonic acid-(2-6)-beta-D-glucopyranose-(1-6)]beta-D-galactopyranose-(1-3)-2-amino-2-deoxy-beta-D-galactopyranose-(1-3)-[beta-D-glucopyranose-(1-6)]beta-D-galactopyranose, ...
Authors:	Lee, I.M, Tu, I.F, Huang, K.F, Wu, S.H.
Deposit date:	2016-05-08
Release date:	2017-03-08
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (1.48 Å)
Cite:	Structural basis for fragmenting the exopolysaccharide of Acinetobacter baumannii by bacteriophage Phi AB6 tailspike protein Sci Rep, 7, 2017

2YIJ

Crystal Structure of phospholipase A1
Descriptor:	PHOSPHOLIPASE A1-IIGAMMA
Authors:	Lee, I.
Deposit date:	2011-05-13
Release date:	2012-05-30
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Crystal Structure of Phospholipase A1 To be Published

3CMM

Crystal Structure of the Uba1-Ubiquitin Complex
Descriptor:	PROLINE, Ubiquitin, Ubiquitin-activating enzyme E1 1
Authors:	Lee, I, Schindelin, H.
Deposit date:	2008-03-23
Release date:	2008-08-05
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Structural insights into E1-catalyzed ubiquitin activation and transfer to conjugating enzymes. Cell(Cambridge,Mass.), 134, 2008

6JF8

K4U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
Descriptor:	L-[(N-HYDROXYAMINO)CARBONYL]PHENYLALANINE, Peptide deformylase, ZINC ION
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	K4U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii To be published

6JFD

K1U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
Descriptor:	(3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid, NICKEL (II) ION, Peptide deformylase
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	K1U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa To be published

6JFF

K3U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
Descriptor:	NICKEL (II) ION, Peptide deformylase, S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	K3U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa To be published

6JFA

Met-Ala-Ser bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
Descriptor:	MET-ALA-SER, NICKEL (II) ION, Peptide deformylase
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.93 Å)
Cite:	Met-Ala-Ser bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa To be published

6JFE

K2U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
Descriptor:	NICKEL (II) ION, Peptide deformylase, S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	K2U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa To be published

6JF3

Actinonin bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
Descriptor:	ACTINONIN, Peptide deformylase, ZINC ION
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.01 Å)
Cite:	Actinonin bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii To be published

6JFC

Actinonin bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
Descriptor:	ACTINONIN, NICKEL (II) ION, Peptide deformylase
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.04 Å)
Cite:	Actinonin bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa To be published

6JFN

K4U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
Descriptor:	L-[(N-HYDROXYAMINO)CARBONYL]PHENYLALANINE, NICKEL (II) ION, Peptide deformylase
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-11
Release date:	2020-03-04
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.04 Å)
Cite:	K4U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa To be published

6JF9

Apo crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa
Descriptor:	GLYCEROL, NICKEL (II) ION, Peptide deformylase
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Apo crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa To be published

6JF4

K1U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
Descriptor:	(3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid, Peptide deformylase, ZINC ION
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	K1U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii To be published

6JF5

K2U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
Descriptor:	(3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid, Peptide deformylase, ZINC ION
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-08
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	K2U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii To be published

6JEV

K2U bound crystal structure of class I type a peptide deformylase from Acinetobacter baumanii
Descriptor:	(3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid, Peptide deformylase, ZINC ION
Authors:	Lee, I.H, Ho, T.H, Kang, L.W.
Deposit date:	2019-02-07
Release date:	2020-02-12
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	K2U bound crystal peptide deformylase from Acinetobacter baumanii To be published

6B9H

Complex of Hook Domain with a Dynein Light Intermediate Chain Peptide
Descriptor:	Cytoplasmic dynein 1 light intermediate chain 1, Protein Hook homolog 3
Authors:	Lee, I.G, Dominguez, R.
Deposit date:	2017-10-10
Release date:	2018-03-21
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	A conserved interaction of the dynein light intermediate chain with dynein-dynactin effectors necessary for processivity. Nat Commun, 9, 2018

6IKT

K1U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
Descriptor:	(3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid, CADMIUM ION, NICKEL (II) ION, ...
Authors:	Lee, I.H, Kang, L.W.
Deposit date:	2018-10-16
Release date:	2019-10-23
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	K1U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae To be published

6IL0

K3U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
Descriptor:	NICKEL (II) ION, Peptide deformylase, S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate
Authors:	Lee, I.H, Kang, L.W.
Deposit date:	2018-10-16
Release date:	2019-10-23
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.93 Å)
Cite:	FBIs complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae To be published

6IKY

K2U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
Descriptor:	(3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid, NICKEL (II) ION, Peptide deformylase
Authors:	Lee, I.H, Kang, L.W.
Deposit date:	2018-10-16
Release date:	2019-10-23
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	FBIs complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae To be published

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Total results:	87
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Lee, I"