3CMM

Crystal Structure of the Uba1-Ubiquitin Complex

Summary for 3CMM

DescriptorUbiquitin-activating enzyme E1 1, Ubiquitin, PROLINE, ... (4 entities in total)
Functional Keywordsubiquitin, e1, uba1, protein turnover, ligase, conformational change, thioester, adenylation, transthioesterification, atp-binding, nucleotide-binding, nucleus, phosphoprotein, ubl conjugation pathway, dna damage, dna repair, ligase-protein binding complex, ligase/protein binding
Biological sourceSaccharomyces cerevisiae (Baker's yeast)
Cellular locationCytoplasm P22515
Total number of polymer chains4
Total molecular weight244399.75
Authors
Lee, I.,Schindelin, H. (deposition date: 2008-03-23, release date: 2008-08-05, Last modification date: 2017-10-25)
Primary citation
Lee, I.,Schindelin, H.
Structural insights into E1-catalyzed ubiquitin activation and transfer to conjugating enzymes.
Cell(Cambridge,Mass.), 134:268-278, 2008
PubMed: 18662542 (PDB entries with the same primary citation)
DOI: 10.1016/j.cell.2008.05.046
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.7 Å)
NMR Information
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.18991.0%9.6%3.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3cmm
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Molmil generated image of 3cmm
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Molmil generated image of 3cmm
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 3cmm
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Molmil generated image of 3cmm
rotated about x axis by 90°
Molmil generated image of 3cmm
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (3cmm.pdb2.gz [173.6 KB])
Coordinate files for Biological unit (3cmm.pdb1.gz [173.73 KB])
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