5G1D

The complex structure of syntenin-1 PDZ domain with c-terminal extension

Summary for 5G1D

Related5G1E
DescriptorSYNTENIN-1, SYNDECAN-4 (2 entities in total)
Functional Keywordssignaling protein
Biological sourceRATTUS NORVEGICUS (NORWAY RAT)
Cellular locationCell junction, focal adhesion  Q9JI92
Total number of polymer chains4
Total molecular weight45472.51
Authors
Lee, I.,Kim, H.,Yun, J.H.,Lee, W. (deposition date: 2016-03-25, release date: 2016-11-23, Last modification date: 2017-07-12)
Primary citation
Choi, Y.,Yun, J.H.,Yoo, J.,Kim, H.,Lee, I.,Son, H.N.,Kim, I.S.,Yoon, H.S.,Zimmermann, P.,Couchman, J.R.,Cho, H.S.,Oh, E.S.,Lee, W.
New Structural Insight of C-Terminal Region of Syntenin-1, Enhancing the Molecular Dimerization and Inhibitory Function Related on Syndecan-4 Signaling.
Sci.Rep., 6:36818-, 2016
PubMed: 27830760 (PDB entries with the same primary citation)
DOI: 10.1038/SREP36818
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.81 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.256250.9%20.3%1.4%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5g1d
no rotation
Molmil generated image of 5g1d
rotated about x axis by 90°
Molmil generated image of 5g1d
rotated about y axis by 90°
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