5G1D
The complex structure of syntenin-1 PDZ domain with c-terminal extension
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 77 |
Detector technology | CCD |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.525, 88.529, 90.368 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.810 |
R-factor | 0.19624 |
Rwork | 0.194 |
R-free | 0.23493 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.027 |
RMSD bond angle | 2.269 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.850 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.070 | 0.290 |
Number of reflections | 13799 | |
<I/σ(I)> | 24 | 4.36 |
Completeness [%] | 97.6 | 93.9 |
Redundancy | 8.8 | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 0.2 M LITHIUM SULFATE MONOHYDRATE, 0.1 M TRIS HYDROCHLORIDE (PH 8.5), 30% (W/V) POLYETHYLENE GLYCOL 4000 |