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PDB: 2928 results

1BP6
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BU of 1bp6 by Molmil
THYMIDYLATE SYNTHASE R23I, R179T DOUBLE MUTANT
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, POTASSIUM ION, PROTEIN (THYMIDYLATE SYNTHASE)
Authors:Morse, R.J, Finer-Moore, J.S, Stroud, R.M.
Deposit date:1998-08-13
Release date:1998-08-19
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Energetic contributions of four arginines to phosphate-binding in thymidylate synthase are more than additive and depend on optimization of "effective charge balance".
Biochemistry, 39, 2000
1BP0
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BU of 1bp0 by Molmil
THYMIDYLATE SYNTHASE R23I MUTANT
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, POTASSIUM ION, PROTEIN (THYMIDYLATE SYNTHASE)
Authors:Morse, R, Finer-Moore, J, Stroud, R.M.
Deposit date:1998-08-11
Release date:2000-01-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Energetic contributions of four arginines to phosphate-binding in thymidylate synthase are more than additive and depend on optimization of "effective charge balance".
Biochemistry, 39, 2000
2B14
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BU of 2b14 by Molmil
The crystal structure of 2,4-dinitrophenol in complex with the amyloidogenic variant Transthyretin Leu 55 Pro
Descriptor: 2,4-DINITROPHENOL, Transthyretin
Authors:Morais-de-Sa, E, Neto-Silva, R.M, Pereira, P.J, Saraiva, M.J, Damas, A.M.
Deposit date:2005-09-15
Release date:2006-07-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:The binding of 2,4-dinitrophenol to wild-type and amyloidogenic transthyretin
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2B16
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The crystal structure of 2,4-dinitrophenol in complex with the amyloidogenic variant Transthyretin Tyr78Phe
Descriptor: 2,4-DINITROPHENOL, Transthyretin
Authors:Morais-de-Sa, E, Neto-Silva, R.M, Pereira, P.J, Saraiva, M.J, Damas, A.M.
Deposit date:2005-09-15
Release date:2006-07-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The binding of 2,4-dinitrophenol to wild-type and amyloidogenic transthyretin
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
1BQ2
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BU of 1bq2 by Molmil
E. COLI THYMIDYLATE SYNTHASE MUTANT N177A
Descriptor: PHOSPHATE ION, THYMIDYLATE SYNTHASE
Authors:Reyes, C.L, Sage, C.R, Rutenber, E.E, Finer-Moore, J.S, Stroud, R.M.
Deposit date:1998-08-20
Release date:1999-04-27
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Inactivity of N229A thymidylate synthase due to water-mediated effects: isolating a late stage in methyl transfer.
J.Mol.Biol., 284, 1998
2F60
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BU of 2f60 by Molmil
Crystal Structure of the Dihydrolipoamide Dehydrogenase (E3)-Binding Domain of Human E3-Binding Protein
Descriptor: GLYCEROL, Pyruvate dehydrogenase protein X component
Authors:Brautigam, C.A, Chuang, J.L, Wynn, R.M, Tomchick, D.R, Machius, M, Chuang, D.T.
Deposit date:2005-11-28
Release date:2006-01-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural Insight into Interactions between Dihydrolipoamide Dehydrogenase (E3) and E3 Binding Protein of Human Pyruvate Dehydrogenase Complex.
Structure, 14, 2006
1PSK
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BU of 1psk by Molmil
THE CRYSTAL STRUCTURE OF AN FAB FRAGMENT THAT BINDS TO THE MELANOMA-ASSOCIATED GD2 GANGLIOSIDE
Descriptor: ANTIBODY
Authors:Pichla, S.L, Murali, R, Burnett, R.M.
Deposit date:1997-03-03
Release date:1997-09-04
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of a Fab fragment to the melanoma-associated GD2 ganglioside.
J.Struct.Biol., 119, 1997
2EVU
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BU of 2evu by Molmil
Crystal structure of aquaporin AqpM at 2.3A resolution
Descriptor: Aquaporin aqpM, GLYCEROL, octyl beta-D-glucopyranoside
Authors:Lee, J.K, Kozono, D, Remis, J, Kitagawa, Y, Agre, P, Stroud, R.M, Center for Structures of Membrane Proteins (CSMP)
Deposit date:2005-10-31
Release date:2005-12-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for conductance by the archaeal aquaporin AqpM at 1.68 A.
Proc.Natl.Acad.Sci.Usa, 102, 2005
2EXL
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BU of 2exl by Molmil
GRP94 N-terminal Domain bound to geldanamycin
Descriptor: Endoplasmin, GELDANAMYCIN, PENTAETHYLENE GLYCOL, ...
Authors:Reardon, P.N, Immormino, R.M, Gewirth, D.T.
Deposit date:2005-11-08
Release date:2006-10-24
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Different poses for ligand and chaperone in inhibitor-bound Hsp90 and GRP94: implications for paralog-specific drug design.
J.Mol.Biol., 388, 2009
2FHG
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BU of 2fhg by Molmil
Crystal Structure of Mycobacterial Tuberculosis Proteasome
Descriptor: 20S proteasome, alpha and beta subunits, proteasome, ...
Authors:Hu, G, Lin, G, Wang, M, Dick, L, Xu, R.M, Nathan, C, Li, H.
Deposit date:2005-12-23
Release date:2006-02-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.23 Å)
Cite:Structure of the Mycobacterium tuberculosis proteasome and mechanism of inhibition by a peptidyl boronate.
Mol.Microbiol., 59, 2006
1RML
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BU of 1rml by Molmil
NMR STUDY OF ACID FIBROBLAST GROWTH FACTOR BOUND TO 1,3,6-NAPHTHALENE TRISULPHONATE, 26 STRUCTURES
Descriptor: ACIDIC FIBROBLAST GROWTH FACTOR, NAPHTHALENE TRISULFONATE
Authors:Lozano, R.M, Jimenez, M.A, Santoro, J, Rico, M, Gimenez-Gallego, G.
Deposit date:1998-05-21
Release date:1998-11-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of acidic fibroblast growth factor bound to 1,3, 6-naphthalenetrisulfonate: a minimal model for the anti-tumoral action of suramins and suradistas.
J.Mol.Biol., 281, 1998
2EVQ
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BU of 2evq by Molmil
Solution structure of HP7, a 12-residue beta hairpin
Descriptor: HP7
Authors:Andersen, N.H, Olsen, K.A, Fesinmeyer, R.M.
Deposit date:2005-10-31
Release date:2006-03-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Minimization and Optimization of Designed beta-Hairpin Folds
J.Am.Chem.Soc., 128, 2006
2ESA
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BU of 2esa by Molmil
GRP94 n-terminal domain bound to geldanamycin: effects of mutants 168-169 KS-AA
Descriptor: Endoplasmin, GELDANAMYCIN, TETRAETHYLENE GLYCOL, ...
Authors:Immormino, R.M, Metzger IV, L.E, Gewirth, D.T.
Deposit date:2005-10-25
Release date:2006-10-03
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of GRP94 with the specific mutation KS168-169AA; with bound Geldanamycin
To be Published
2F5Z
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BU of 2f5z by Molmil
Crystal Structure of Human Dihydrolipoamide Dehydrogenase (E3) Complexed to the E3-Binding Domain of Human E3-Binding Protein
Descriptor: Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, Pyruvate dehydrogenase protein X component, ...
Authors:Brautigam, C.A, Chuang, J.L, Wynn, R.M, Tomchick, D.R, Machius, M, Chuang, D.T.
Deposit date:2005-11-28
Release date:2006-01-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structural Insight into Interactions between Dihydrolipoamide Dehydrogenase (E3) and E3 Binding Protein of Human Pyruvate Dehydrogenase Complex.
Structure, 14, 2006
2F2B
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BU of 2f2b by Molmil
Crystal structure of integral membrane protein Aquaporin AqpM at 1.68A resolution
Descriptor: Aquaporin aqpM, GLYCEROL
Authors:Lee, J.K, Kozono, D, Remis, J, Kitagawa, Y, Agre, P, Stroud, R.M, Center for Structures of Membrane Proteins (CSMP)
Deposit date:2005-11-15
Release date:2005-12-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural basis for conductance by the archaeal aquaporin AqpM at 1.68 A.
Proc.Natl.Acad.Sci.Usa, 102, 2005
2FLZ
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BU of 2flz by Molmil
The X-ray structure of cis-3-chloroacrylic acid dehalogenase (cis-CaaD) with a sulfate ion bound in the active site
Descriptor: SULFATE ION, cis-3-chloroacrylic acid dehalogenase
Authors:de Jong, R.M.
Deposit date:2006-01-06
Release date:2006-11-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal Structures of Native and Inactivated cis-3-Chloroacrylic Acid Dehalogenase: STRUCTURAL BASIS FOR SUBSTRATE SPECIFICITY AND INACTIVATION BY (R)-OXIRANE-2-CARBOXYLATE.
J.Biol.Chem., 282, 2007
2FLT
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BU of 2flt by Molmil
The X-ray structure of the cis-3-chloroacrylic acid dehalogenase cis-CaaD inactivated with (R)-Oxirane-2-carboxylate
Descriptor: LACTIC ACID, cis-3-chloroacrylic acid dehalogenase
Authors:de Jong, R.M.
Deposit date:2006-01-06
Release date:2006-11-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of Native and Inactivated cis-3-Chloroacrylic Acid Dehalogenase: STRUCTURAL BASIS FOR SUBSTRATE SPECIFICITY AND INACTIVATION BY (R)-OXIRANE-2-CARBOXYLATE.
J.Biol.Chem., 282, 2007
2FR0
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BU of 2fr0 by Molmil
The first ketoreductase of the erythromycin synthase (crystal form 1)
Descriptor: Erythromycin synthase, EryAI, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Keatinge-Clay, A.T, Stroud, R.M.
Deposit date:2006-01-18
Release date:2006-04-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:The Structure of a Ketoreductase Determines the Organization of the beta-Carbon Processing Enzymes of Modular Polyketide Synthases
Structure, 14, 2006
5WIV
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BU of 5wiv by Molmil
Structure of the sodium-bound human D4 Dopamine receptor in complex with Nemonapride
Descriptor: D(4) dopamine receptor, soluble cytochrome b562 chimera, DI(HYDROXYETHYL)ETHER, ...
Authors:Wacker, D, Wang, S, Levit, A, Che, T, Betz, R.M, McCorvy, J.D, Venkatakrishnan, A.J, Huang, X.-P, Dror, R.O, Shoichet, B.K, Roth, B.L.
Deposit date:2017-07-20
Release date:2017-10-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.143 Å)
Cite:D4 dopamine receptor high-resolution structures enable the discovery of selective agonists.
Science, 358, 2017
1X7T
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BU of 1x7t by Molmil
Structure of TTR R104H: a non-amyloidogenic variant with protective clinical effects
Descriptor: Transthyretin
Authors:Neto-Silva, R.M, Macedo-Ribeiro, S, Pereira, P.J.B, Coll, M, Saraiva, M.J, Damas, A.M.
Deposit date:2004-08-16
Release date:2005-03-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray crystallographic studies of two transthyretin variants: further insights into amyloidogenesis.
Acta Crystallogr.,Sect.D, 61, 2005
3LZD
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BU of 3lzd by Molmil
Crystal structure of Dph2 from Pyrococcus horikoshii with 4Fe-4S cluster
Descriptor: Dph2, IRON/SULFUR CLUSTER, SULFATE ION
Authors:Torelli, A.T, Zhang, Y, Zhu, X, Lee, M, Dzikovski, B, Koralewski, R.M, Wang, E, Freed, J, Krebs, C, Lin, H, Ealick, S.E.
Deposit date:2010-03-01
Release date:2010-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Diphthamide biosynthesis requires an organic radical generated by an iron-sulphur enzyme.
Nature, 465, 2010
3M02
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BU of 3m02 by Molmil
The Crystal Structure of 5-epi-aristolochene synthase complexed with (2-cis,6-trans)-2-fluorofarnesyl diphosphate
Descriptor: (2E,6E)-2-fluoro-3,7,11-trimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate, Aristolochene synthase, MAGNESIUM ION
Authors:Noel, J.P, Dellas, N, Faraldos, J.A, Zhao, M, Hess Jr, B.A, Smentek, L, Coates, R.M, O'Maille, P.E.
Deposit date:2010-03-02
Release date:2010-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural elucidation of cisoid and transoid cyclization pathways of a sesquiterpene synthase using 2-fluorofarnesyl diphosphates.
Acs Chem.Biol., 5, 2010
4UC2
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BU of 4uc2 by Molmil
Crystal structure of translocator protein 18kDa (TSPO) from rhodobacter sphaeroides (A139T mutant) in P212121 space group
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, TETRAETHYLENE GLYCOL, TRANSLOCATOR PROTEIN TSPO
Authors:Li, F, Liu, J, Zheng, Y, Garavito, R.M, Ferguson-Miller, S.
Deposit date:2014-08-13
Release date:2015-02-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of translocator protein (TSPO) and mutant mimic of a human polymorphism.
Science, 347, 2015
1X93
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NMR Structure of Helicobacter pylori HP0222
Descriptor: hypothetical protein HP0222
Authors:Popescu, A, Karpay, A, Israel, D, Peek Jr, R.M, Krezel, A.M.
Deposit date:2004-08-19
Release date:2005-03-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Helicobacter pylori protein HP0222 belongs to Arc/MetJ family of transcriptional regulators.
Proteins, 59, 2005
5WIU
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BU of 5wiu by Molmil
Structure of the human D4 Dopamine receptor in complex with Nemonapride
Descriptor: D(4) dopamine receptor, soluble cytochrome b562 chimera, DI(HYDROXYETHYL)ETHER, ...
Authors:Wacker, D, Wang, S, Levit, A, Che, T, Betz, R.M, McCorvy, J.D, Venkatakrishnan, A.J, Huang, X.-P, Dror, R.O, Shoichet, B.K, Roth, B.L.
Deposit date:2017-07-20
Release date:2017-10-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.962 Å)
Cite:D4 dopamine receptor high-resolution structures enable the discovery of selective agonists.
Science, 358, 2017

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