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PDB: 2930 results

5VT1
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Crystal Structure of the Human CAMKK2B bound to a thiadiazinone benzamide inhibitor
Descriptor: 4-({5-[(3-hydroxy-4-methylphenyl)amino]-4-oxo-4H-1,2,6-thiadiazin-3-yl}amino)benzamide, Calcium/calmodulin-dependent protein kinase kinase 2, MAGNESIUM ION
Authors:Counago, R.M, Asquith, C.R.M, Arruda, P, Edwards, A.M, Gileadi, O, Kalogirou, A.S, Koutentis, P.A, Structural Genomics Consortium (SGC)
Deposit date:2017-05-15
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:1,2,6-Thiadiazinones as Novel Narrow Spectrum Calcium/Calmodulin-Dependent Protein Kinase Kinase 2 (CaMKK2) Inhibitors.
Molecules, 23, 2018
5KCI
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BU of 5kci by Molmil
Crystal Structure of HTC1
Descriptor: GLYCEROL, SULFATE ION, Uncharacterized protein YPL067C, ...
Authors:Martin, R.M, Horowitz, S, Koepnick, B, Cooper, S, Flatten, J, Rogawski, D.S, Koropatkin, N.M, Beinlich, F.R.M, Players, F, Students, U.M, Popovic, Z, Baker, D, Khatib, F, Bardwell, J.C.A.
Deposit date:2016-06-06
Release date:2016-09-21
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.833 Å)
Cite:Determining crystal structures through crowdsourcing and coursework.
Nat Commun, 7, 2016
4V5L
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BU of 4v5l by Molmil
The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog
Descriptor: 16S RRNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Voorhees, R.M, Schmeing, T.M, Ramakrishnan, V.
Deposit date:2010-09-02
Release date:2014-07-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The Mechanism for Activation of GTP Hydrolysis on the Ribosome.
Science, 330, 2010
3VAD
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BU of 3vad by Molmil
Crystal structure of I170F mutant branched-chain alpha-ketoacid dehydrogenase kinase in complex with 3,6-dichlorobenzo[b]thiophene-2-carboxylic acid
Descriptor: 3,6-dichloro-1-benzothiophene-2-carboxylic acid, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ahmed, K, Gui, W.J, Tso, S.C, Chuang, J.L, Wynn, R.M, Chuang, D.T.
Deposit date:2011-12-29
Release date:2013-01-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.602 Å)
Cite:Crystal structure of I170F mutant branched-chain alpha-ketoacid dehydrogenase kinase in complex with 3,6-dichlorobenzo[b]thiophene-2-carboxylic acid
To be Published
2XNI
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Protein-ligand complex of a novel macrocyclic HCV NS3 protease inhibitor derived from amino cyclic boronates
Descriptor: (1-{[(10-tert-butyl-15,15-dimethyl-3,9,12-trioxo-6,7,9,10,11,12,14,15,16,17,18,19,23,23a-tetradecahydro-1H,5H-2,23:5,8-dimethano-4,13,2,8,11-benzodioxatriazacyclohenicosin-7(3H)-yl)carbonyl]amino}-3-hydroxypropyl)(trihydroxy)borate(1-), MAGNESIUM ION, NS3 PROTEASE, ...
Authors:Li, X, Zhang, Y.-K, Liu, Y, Ding, C.Z, Zhou, Y, Li, Q, Plattner, J.J, Baker, S.J, Zhang, S, Kazmierski, W.M, Wright, L.L, Smith, G.K, Grimes, R.M, Crosby, R.M, Creech, K.L, Carballo, L.H, Slater, M.J, Jarvest, R.L, Thommes, P, Hubbard, J.A, Convery, M.A, Nassau, P.M, McDowell, W, Skarzynski, T.J, Qian, X, Fan, D, Liao, L, Ni, Z.-J, Pennicott, L.E, Zou, W, Wright, J.
Deposit date:2010-08-02
Release date:2011-08-17
Last modified:2012-09-26
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Novel Macrocyclic Hcv Ns3 Protease Inhibitors Derived from Alpha-Amino Cyclic Boronates.
Bioorg.Med.Chem.Lett., 20, 2010
4PEU
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BU of 4peu by Molmil
Structure of the polysaccharide lyase-like protein Cthe_2159 from C. thermocellum, native form with Calcium bound
Descriptor: CALCIUM ION, Uncharacterized protein
Authors:Close, D.W, D'Angelo, S, Bradbury, A.R.M.
Deposit date:2014-04-24
Release date:2014-10-01
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8001 Å)
Cite:A new family of beta-helix proteins with similarities to the polysaccharide lyases.
Acta Crystallogr.,Sect.D, 70, 2014
4P5I
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BU of 4p5i by Molmil
Crystal structure of the chemokine binding protein from orf virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chemokine binding protein
Authors:Counago, R.M, Krause, K.L.
Deposit date:2014-03-17
Release date:2015-07-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structures of Orf Virus Chemokine Binding Protein in Complex with Host Chemokines Reveal Clues to Broad Binding Specificity.
Structure, 23, 2015
8IQF
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Cryo-EM structure of the dimeric human CAF1-H3-H4 complex
Descriptor: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ...
Authors:Liu, C.P, Yu, Z.Y, Xu, R.M.
Deposit date:2023-03-16
Release date:2023-08-16
Last modified:2023-09-06
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1.
Science, 381, 2023
8IQG
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Cryo-EM structure of the monomeric human CAF1-H3-H4 complex
Descriptor: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ...
Authors:Liu, C.P, Yu, Z.Y, Xu, R.M.
Deposit date:2023-03-16
Release date:2023-08-16
Last modified:2023-09-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1.
Science, 381, 2023
6S08
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BU of 6s08 by Molmil
Crystal Structure of Properdin (TSR domains N1 & 456)
Descriptor: Properdin, SODIUM ION, TRIETHYLENE GLYCOL, ...
Authors:van den Bos, R.M, Pearce, N.M, Gros, P.
Deposit date:2019-06-14
Release date:2019-09-04
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Insights Into Enhanced Complement Activation by Structures of Properdin and Its Complex With the C-Terminal Domain of C3b.
Front Immunol, 10, 2019
7ZG6
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BU of 7zg6 by Molmil
TacA1 antitoxin
Descriptor: DUF1778 domain-containing protein, MAGNESIUM ION
Authors:Grabe, G.J, Morgan, R.M.L, Helaine, S.
Deposit date:2022-04-01
Release date:2023-10-11
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Molecular stripping underpins derepression of a toxin-antitoxin system.
Nat.Struct.Mol.Biol., 2024
7ZG5
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BU of 7zg5 by Molmil
The crystal structure of Salmonella TacAT3-DNA complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Acetyltransferase, BARIUM ION, ...
Authors:Grabe, G.J, Morgan, R.M.L, Helaine, S.
Deposit date:2022-04-01
Release date:2023-10-11
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular stripping underpins derepression of a toxin-antitoxin system.
Nat.Struct.Mol.Biol., 2024
6RMK
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BU of 6rmk by Molmil
Bacteriorhodopsin, dark state, cell 2, refined using the same protocol as sub-ps time delays
Descriptor: Bacteriorhodopsin, RETINAL
Authors:Nass Kovacs, G, Colletier, J.-P, Gruenbein, M.L, Stensitzki, T, Batyuk, A, Carbajo, S, Doak, R.B, Ehrenberg, D, Foucar, L, Gasper, R, Gorel, A, Hilpert, M, Kloos, M, Koglin, J, Reinstein, J, Roome, C.M, Schlesinger, R, Seaberg, M, Shoeman, R.L, Stricker, M, Boutet, S, Haacke, S, Heberle, J, Domratcheva, T, Barends, T.R.M, Schlichting, I.
Deposit date:2019-05-07
Release date:2019-06-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin.
Nat Commun, 10, 2019
5ICD
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BU of 5icd by Molmil
REGULATION OF AN ENZYME BY PHOSPHORYLATION AT THE ACTIVE SITE
Descriptor: ISOCITRATE DEHYDROGENASE, ISOCITRIC ACID, MAGNESIUM ION
Authors:Hurley, J.H, Dean, A.M, Sohl, J.L, Koshlandjunior, D.E, Stroud, R.M.
Deposit date:1990-05-30
Release date:1991-10-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Regulation of an enzyme by phosphorylation at the active site.
Science, 249, 1990
1XEE
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BU of 1xee by Molmil
Solution structure of the Chemotaxis Inhibitory Protein of Staphylococcus aureus
Descriptor: chemotaxis-inhibiting protein CHIPS
Authors:Haas, P.J, de Haas, C.J, Poppelier, M.J, van Kessel, K.P, van Strijp, J.A, Dijkstra, K, Scheek, R.M, Fan, H, Kruijtzer, J.A, Liskamp, R.M, Kemmink, J.
Deposit date:2004-09-10
Release date:2005-09-27
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The structure of the C5a receptor-blocking domain of chemotaxis inhibitory protein of Staphylococcus aureus is related to a group of immune evasive molecules
J.Mol.Biol., 353, 2005
1GBT
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BU of 1gbt by Molmil
STRUCTURE OF AN ACYL-ENZYME INTERMEDIATE DURING CATALYSIS: (GUANIDINOBENZOYL) TRYPSIN
Descriptor: 4-carbamimidamidobenzoic acid, BETA-TRYPSIN, CALCIUM ION, ...
Authors:Singer, P.T, Sweet, R.M.
Deposit date:1991-09-17
Release date:1994-01-31
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of an acyl-enzyme intermediate during catalysis: (guanidinobenzoyl)trypsin.
Biochemistry, 29, 1990
1GW8
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BU of 1gw8 by Molmil
quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography.
Descriptor: MAJOR CAPSID PROTEIN
Authors:San Martin, C, Huiskonen, J, Bamford, J.K.H, Butcher, S.J, Fuller, S.D, Bamford, D.H, Burnett, R.M.
Deposit date:2002-03-08
Release date:2002-03-15
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (13.3 Å)
Cite:Minor Proteins, Mobile Arms and Membrane-Capsid Interactions in the Bacteriophage Prd1 Capsid.
Nat.Struct.Biol., 9, 2002
1GW7
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BU of 1gw7 by Molmil
QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY.
Descriptor: MAJOR CAPSID PROTEIN
Authors:San Martin, C, Huiskonen, J, Bamford, J.K.H, Butcher, S.J, Fuller, S.D, Bamford, D.H, Burnett, R.M.
Deposit date:2002-03-08
Release date:2002-03-13
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Minor Proteins, Mobile Arms, and Membrane-Capsid Interactions in Bacteriophage Prd1 Capsid Assembly
Nat.Struct.Biol., 9, 2002
1HX6
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BU of 1hx6 by Molmil
P3, THE MAJOR COAT PROTEIN OF THE LIPID-CONTAINING BACTERIOPHAGE PRD1.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, MAJOR CAPSID PROTEIN, ...
Authors:Benson, S.D, Bamford, J.K.H, Bamford, D.H, Burnett, R.M.
Deposit date:2001-01-11
Release date:2001-01-24
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The X-ray crystal structure of P3, the major coat protein of the lipid-containing bacteriophage PRD1, at 1.65 A resolution.
Acta Crystallogr.,Sect.D, 58, 2002
1HQN
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BU of 1hqn by Molmil
THE SELENOMETHIONINE DERIVATIVE OF P3, THE MAJOR COAT PROTEIN OF THE LIPID-CONTAINING BACTERIOPHAGE PRD1.
Descriptor: MAJOR CAPSID PROTEIN
Authors:Benson, S.D, Bamford, J.K.H, Bamford, D.H, Burnett, R.M.
Deposit date:2000-12-18
Release date:2001-01-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The X-ray crystal structure of P3, the major coat protein of the lipid-containing bacteriophage PRD1, at 1.65 A resolution.
Acta Crystallogr.,Sect.D, 58, 2002
6X5X
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BU of 6x5x by Molmil
Crystal structure o BmooMP-I, a P-I metalloproteinase from Bothrops moojeni
Descriptor: CALCIUM ION, SULFATE ION, Snake venom metalloproteinase BmooMP-I, ...
Authors:Salvador, G.H.M, Borges, R.J, Fontes, M.R.M.
Deposit date:2020-05-27
Release date:2020-10-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Biochemical, pharmacological and structural characterization of BmooMP-I, a new P-I metalloproteinase from Bothrops moojeni venom.
Biochimie, 179, 2020
6XYR
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BU of 6xyr by Molmil
Structure of the T4Lnano fusion protein
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Benoit, R.M, Bierig, T, Collu, C, Engilberge, S, Olieric, V.
Deposit date:2020-01-31
Release date:2020-12-09
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.079 Å)
Cite:Chimeric single alpha-helical domains as rigid fusion protein connections for protein nanotechnology and structural biology.
Structure, 30, 2022
6L3H
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BU of 6l3h by Molmil
Cryo-EM structure of dimeric quinol dependent Nitric Oxide Reductase (qNOR) from the pathogen Neisseria meninigitidis
Descriptor: CALCIUM ION, FE (III) ION, Nitric-oxide reductase, ...
Authors:Jamali, M.M.A, Gopalasingam, C.C, Johnson, R.M, Tosha, T, Muench, S.P, Muramoto, K, Antonyuk, S.V, Shiro, Y, Hasnain, S.S.
Deposit date:2019-10-11
Release date:2020-04-01
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:The active form of quinol-dependent nitric oxide reductase fromNeisseria meningitidisis a dimer.
Iucrj, 7, 2020
6XR8
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BU of 6xr8 by Molmil
Distinct conformational states of SARS-CoV-2 spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhang, J, Cai, Y.F, Xiao, T.S, Peng, H.Q, Sterling, S.M, Walsh Jr, R.M, Rawson, S, Volloch, S.R, Chen, B.
Deposit date:2020-07-11
Release date:2020-07-22
Last modified:2020-11-25
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Distinct conformational states of SARS-CoV-2 spike protein.
Science, 369, 2020
5I30
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Crystal structure of the human astrovirus 2 neutralizing monoclonal antibody PL-2 Fab fragment at 1.9 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab PL-2 heavy chain, Fab PL-2 light chain
Authors:Bogdanoff, W.A, DuBois, R.M.
Deposit date:2016-02-09
Release date:2016-04-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:De Novo Sequencing and Resurrection of a Human Astrovirus-Neutralizing Antibody.
Acs Infect Dis., 2, 2016

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