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PDB: 488 results

2R9Y
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BU of 2r9y by Molmil
Structure of antiplasmin
Descriptor: Alpha-2-antiplasmin
Authors:Law, R.H.P, Sofian, T, Kan, W.T, Horvath, A.J, Hitchen, C.R, Langendorf, C.G, Buckle, A.M, Whisstock, J.C, Coughlin, P.B.
Deposit date:2007-09-14
Release date:2007-12-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:X-ray crystal structure of the fibrinolysis inhibitor {alpha}2-antiplasmin
Blood, 111, 2008
1WAN
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BU of 1wan by Molmil
DNA DTA TRIPLEX, NMR, 7 STRUCTURES
Descriptor: DNA (5'-D(*AP*GP*AP*TP*AP*GP*AP*AP*CP*CP*CP*CP*TP*TP*CP*TP*AP*TP*CP*TP*TP*AP*TP*AP*TP*CP*TP*(D3)P*TP*CP*TP*T)-3')
Authors:Wang, E, Koshlap, K.M, Gillespie, P, Dervan, P.B, Feigon, J.
Deposit date:1996-01-14
Release date:1996-07-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a pyrimidine-purine-pyrimidine triplex containing the sequence-specific intercalating non-natural base D3.
J.Mol.Biol., 257, 1996
5WH8
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BU of 5wh8 by Molmil
Cellulase Cel5C_n
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, PENTAETHYLENE GLYCOL, ...
Authors:Koropatkin, N.M, Pope, P.B, Naas, A.E.
Deposit date:2017-07-15
Release date:2018-03-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:"Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the type IX secretion system.
Microbiome, 6, 2018
7SJQ
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BU of 7sjq by Molmil
Ex silico engineering of cystine-dense peptides yielding a potent bispecific T-cell engager
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cystine-dense peptide, GLYCEROL, ...
Authors:Rupert, P.B, Strong, R.
Deposit date:2021-10-18
Release date:2022-06-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ex silico engineering of cystine-dense peptides yielding a potent bispecific T cell engager.
Sci Transl Med, 14, 2022
4GVJ
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BU of 4gvj by Molmil
Tyk2 (JH1) in complex with adenosine di-phosphate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Non-receptor tyrosine-protein kinase TYK2
Authors:Liang, J, Abbema, A.V, Bao, L, Barrett, K, Beresini, M, Berezhkovskiy, L, Blair, W, Chang, C, Driscoll, J, Eigenbrot, C, Ghilardi, N, Gibbons, P, Halladay, J, Johnson, A, Kohli, P.B, Lai, Y, Liimatta, M, Mantik, P, Menghrajani, K, Murray, J, Sambrone, A, Shao, Y, Shia, S, Shin, Y, Smith, J, Sohn, S, Stanley, M, Tsui, V, Ultsch, M, Wu, L, Zhang, B, Magnuson, S.
Deposit date:2012-08-30
Release date:2013-08-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Lead identification of novel and selective TYK2 inhibitors.
Eur.J.Med.Chem., 67, 2013
4R0O
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BU of 4r0o by Molmil
Crystal structure of PEGylated plastocyanin at 4.2 A resolution
Descriptor: 1-methylpyrrolidine-2,5-dione, COPPER (II) ION, Plastocyanin
Authors:Cattani, G, Vogeley, L, Crowley, P.B.
Deposit date:2014-08-01
Release date:2015-10-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Structure of a PEGylated protein reveals a highly porous double-helical assembly.
NAT.CHEM., 7, 2015
4JLR
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BU of 4jlr by Molmil
Crystal structure of a designed Respiratory Syncytial Virus Immunogen in complex with Motavizumab
Descriptor: Motavizumab Fab heavy chain, Motavizumab Fab light chain, PENTAETHYLENE GLYCOL, ...
Authors:Rupert, P.B, Correia, B, Schief, W, Strong, R.K.
Deposit date:2013-03-12
Release date:2014-02-05
Last modified:2014-12-17
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Proof of principle for epitope-focused vaccine design.
Nature, 507, 2014
7KCI
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BU of 7kci by Molmil
DETERMINANTS OF REPRESSOR/OPERATOR RECOGNITION FROM THE STRUCTURE OF THE TRP OPERATOR BINDING SITE
Descriptor: Self-complementary deoxyoligonucleotide decamer d(CCACTAGTGG)
Authors:Shakked, Z, Guzikevich-Guerstein, G, Frolow, F, Rabinovich, D, Joachimiak, A, Sigler, P.B.
Deposit date:1994-09-12
Release date:2020-10-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Determinants of repressor/operator recognition from the structure of the trp operator binding site.
Nature, 368, 1994
3TYI
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BU of 3tyi by Molmil
Crystal Structure of Cytochrome c - p-Sulfonatocalix[4]arene Complexes
Descriptor: 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid, Cytochrome c iso-1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Mc Govern, R.E, Fernandes, H, Khan, A.R, Crowley, P.B.
Deposit date:2011-09-26
Release date:2012-05-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.399 Å)
Cite:Protein camouflage in cytochrome c-calixarene complexes.
Nat Chem, 4, 2012
4D03
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BU of 4d03 by Molmil
Structure of the Cys65Asp mutant of phenylacetone monooxygenase: oxidised state
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, HEXAETHYLENE GLYCOL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Brondani, P.B, Dudek, H.M, Martinoli, C, Mattevi, A, Fraaije, M.W.
Deposit date:2014-04-24
Release date:2014-12-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Finding the Switch: Turning a Baeyer-Villiger Monooxygenase Into a Nadph Oxidase.
J.Am.Chem.Soc., 136, 2014
4PRQ
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BU of 4prq by Molmil
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH SCLX4 AT 1.72 A RESOLUTION
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid, HEXAETHYLENE GLYCOL, ...
Authors:McGovern, R.E, McCarthy, A.A, Crowley, P.B.
Deposit date:2014-03-06
Release date:2014-09-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Protein assembly mediated by sulfonatocalix[4]arene.
Chem.Commun.(Camb.), 50, 2014
4PRU
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BU of 4pru by Molmil
Crystal structure of dimethyllysine hen egg-white lysozyme in complex with sclx4 at 2.2 A resolution
Descriptor: 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid, GLYCEROL, Lysozyme C
Authors:McGovern, R.E, Lyons, J.A, Crowley, P.B.
Deposit date:2014-03-06
Release date:2014-11-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural study of a small molecule receptor bound to dimethyllysine in lysozyme.
Chem Sci, 6, 2015
5V00
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BU of 5v00 by Molmil
Structure of HutD from Pseudomonas fluorescens SBW25 (Formate condition)
Descriptor: FORMIC ACID, GLYCEROL, Uncharacterized protein
Authors:Liu, Y, Johnston, J.M, Gerth, M.L, Baker, E.N, Lott, J.S, Rainey, P.B.
Deposit date:2017-02-27
Release date:2017-03-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a bicupin protein HutD involved in histidine utilization in Pseudomonas.
Proteins, 85, 2017
5T8W
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BU of 5t8w by Molmil
Cytochrome c - calixarene free
Descriptor: CHLORIDE ION, Cyc1p, HEME C
Authors:Doolan, A.M, Rennie, M.L, Crowley, P.B.
Deposit date:2016-09-08
Release date:2017-11-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Protein Recognition by Functionalized Sulfonatocalix[4]arenes.
Chemistry, 24, 2018
4D04
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BU of 4d04 by Molmil
Structure of the Cys65Asp mutant of phenylacetone monooxygenase: reduced state
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, HEXAETHYLENE GLYCOL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Brondani, P.B, Dudek, H.M, Martinoli, C, Mattevi, A, Fraaije, M.W.
Deposit date:2014-04-24
Release date:2014-12-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Finding the Switch: Turning a Baeyer-Villiger Monooxygenase Into a Nadph Oxidase.
J.Am.Chem.Soc., 136, 2014
6OKE
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BU of 6oke by Molmil
Crystal structure of an apo Transferrin-Receptor-Binding cystine-dense peptide
Descriptor: Transferrin-Receptor Binding Peptide
Authors:Rupert, P.B, Strong, R.K.
Deposit date:2019-04-12
Release date:2020-04-15
Last modified:2020-07-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:A TfR-Binding Cystine-Dense Peptide Promotes Blood-Brain Barrier Penetration of Bioactive Molecules.
J.Mol.Biol., 432, 2020
6R95
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BU of 6r95 by Molmil
The solution NMR structure of cis-dicarba-brevinin-1BYa in 33% trifluoroethanol
Descriptor: Brevinin-1BYa
Authors:Timmons, P.B, O'Flynn, D.P, Conlon, J.M, Hewage, C.M.
Deposit date:2019-04-02
Release date:2019-09-25
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Insights into conformation and membrane interactions of the acyclic and dicarba-bridged brevinin-1BYa antimicrobial peptides.
Eur.Biophys.J., 48, 2019
6R96
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BU of 6r96 by Molmil
The solution NMR structure of cis-dicarba-brevinin-1BYa in sodium dodecyl sulphate micelles
Descriptor: Brevinin-1BYa
Authors:Timmons, P.B, O'Flynn, D.P, Conlon, J.M, Hewage, C.M.
Deposit date:2019-04-02
Release date:2019-09-25
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Insights into conformation and membrane interactions of the acyclic and dicarba-bridged brevinin-1BYa antimicrobial peptides.
Eur.Biophys.J., 48, 2019
6RGI
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BU of 6rgi by Molmil
Partially unfolded cytochrome c in complex with sulfonatocalix[6]arene
Descriptor: Cytochrome c iso-1, HEME C, IMIDAZOLE, ...
Authors:Engilberge, S, Rennie, M.L, Crowley, P.B.
Deposit date:2019-04-16
Release date:2019-07-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Calixarene capture of partially unfolded cytochrome c.
Febs Lett., 593, 2019
6P0P
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BU of 6p0p by Molmil
Human beta-tryptase co-crystal structure with 5-{4-[3-(aminomethyl)phenyl]piperidine-1-carbonyl}-2-(3'-{4-[3-(aminomethyl)phenyl]piperidine-1-carbonyl}-[1,1'-biphenyl]-3-yl)-2-hydroxy-2H-1,3,2-benzodioxaborol-2-uide
Descriptor: (3'-{4-[3-(aminomethyl)phenyl]piperidine-1-carbonyl}[1,1'-biphenyl]-3-yl){4-[3-(aminomethyl)phenyl]piperidin-1-yl}[3,4-di(hydroxy-kappaO)phenyl]methanonato(2-)hydroxyborate(1-), 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, ...
Authors:Giardina, S.F, Pingle, M.R, Werner, D.S, Feinberg, P.B, Foreman, K.W, Bergstrom, D.E, Arnold, L.D, Barany, F.
Deposit date:2019-05-17
Release date:2020-03-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Novel, Self-Assembling Dimeric Inhibitors of Human beta Tryptase.
J.Med.Chem., 63, 2020
6PW7
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BU of 6pw7 by Molmil
X-ray crystal structure of C. elegans STIM EF-SAM domain
Descriptor: CALCIUM ION, Stromal interaction molecule 1
Authors:Enomoto, M, Nishikawa, T, Back, S.I, Ishiyama, N, Zheng, L, Stathopulos, P.B, Ikura, M.
Deposit date:2019-07-22
Release date:2019-11-13
Last modified:2020-02-12
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Coordination of a Single Calcium Ion in the EF-hand Maintains the Off State of the Stromal Interaction Molecule Luminal Domain.
J.Mol.Biol., 432, 2020
8CF6
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BU of 8cf6 by Molmil
Dimethylated RSL-R5 in complex with cucurbit[7]uril, F432 cage assembly
Descriptor: GLYCEROL, RSL-R5, cucurbit[7]uril, ...
Authors:Ramberg, K, Crowley, P.B.
Deposit date:2023-02-02
Release date:2023-07-05
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Cage versus sheet: Probing the Determinants of Protein - Cucurbit[7]uril Crystalline Architectures.
J.Struct.Biol., 215, 2023
8CF7
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BU of 8cf7 by Molmil
Dimethylated RSL-R5 in complex with cucurbit[7]uril, C121 sheet assembly
Descriptor: GLYCEROL, RSL-R5, SODIUM ION, ...
Authors:Ramberg, K, Crowley, P.B.
Deposit date:2023-02-02
Release date:2023-07-05
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Cage versus sheet: Probing the Determinants of Protein - Cucurbit[7]uril Crystalline Architectures.
J.Struct.Biol., 215, 2023
8C9Z
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BU of 8c9z by Molmil
The RSL - sulfonato-calix[8]arene complex, H32 form, citrate pH 6.0
Descriptor: Fucose-binding lectin protein, GLYCEROL, beta-D-fructopyranose, ...
Authors:Mockler, N.M, Ramberg, K, Crowley, P.B.
Deposit date:2023-01-23
Release date:2023-07-12
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Protein-macrocycle polymorphism: crystal form IV of the Ralstonia solanacearum lectin-sulfonato-calix[8]arene complex.
Acta Crystallogr D Struct Biol, 79, 2023
8C9Y
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BU of 8c9y by Molmil
The MK-RSL - sulfonato-calix[8]arene complex, H32 form
Descriptor: GLYCEROL, Putative fucose-binding lectin protein, beta-D-fructopyranose, ...
Authors:Mockler, N.M, Ramberg, K, Crowley, P.B.
Deposit date:2023-01-23
Release date:2023-07-12
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Protein-macrocycle polymorphism: crystal form IV of the Ralstonia solanacearum lectin-sulfonato-calix[8]arene complex.
Acta Crystallogr D Struct Biol, 79, 2023

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