Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 46298 results

8FIS
DownloadVisualize
BU of 8fis by Molmil
Structure of Bispecific CAP256V2LS-J3 Fab in complex with BG505 DS-SOSIP.664
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2022-12-16
Release date:2023-02-01
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Bispecific antibody CAP256.J3LS targets V2-apex and CD4-binding sites with high breadth and potency.
Mabs, 15, 2023
7BNM
DownloadVisualize
BU of 7bnm by Molmil
Closed conformation of D614G SARS-CoV-2 spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Benton, D.J, Wrobel, A.G, Rosenthal, P.B, Gamblin, S.J.
Deposit date:2021-01-22
Release date:2021-02-03
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The effect of the D614G substitution on the structure of the spike glycoprotein of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 118, 2021
6WL8
DownloadVisualize
BU of 6wl8 by Molmil
Cryo-EM of Form 2 peptide filament
Descriptor: Form 2 peptide
Authors:Wang, F, Gnewou, O.M, Xu, C, Su, Z, Egelman, E.H, Conticello, V.P.
Deposit date:2020-04-18
Release date:2020-12-02
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural analysis of cross alpha-helical nanotubes provides insight into the designability of filamentous peptide nanomaterials.
Nat Commun, 12, 2021
4S37
DownloadVisualize
BU of 4s37 by Molmil
Crystal structure of R2 pyocin membrane-piercing spike
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Browning, C.B, Leiman, P.G, Shneider, M.M.
Deposit date:2015-01-26
Release date:2016-01-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of R2 pyocin membrane-piercing spike
To be Published
6WIA
DownloadVisualize
BU of 6wia by Molmil
CRYSTAL STRUCTURE OF HUMAN PROTECTIVE PROTEIN/CATHEPSIN A, DFP-INHIBITED (AGED)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, CADMIUM ION, ...
Authors:Compton, J.R, Legler, P.M.
Deposit date:2020-04-09
Release date:2020-04-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structural and kinetic evidence of aging after organophosphate inhibition of human Cathepsin A.
Biochem. Pharmacol., 177, 2020
8PXS
DownloadVisualize
BU of 8pxs by Molmil
Short RNA binding to peptide amyloids
Descriptor: RNA (5'-R(P*GP*UP*CP*A)-3'), VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE
Authors:Rout, S.K, Cadalbert, R, Schroder, N, Wiegand, T, Zehnder, J, Gampp, O, Guntert, P, Kringler, D, Kreutz, C, Knorlein, A, Hall, J, Greenwald, J, Riek, R.
Deposit date:2023-07-24
Release date:2023-10-18
Method:SOLID-STATE NMR
Cite:An Analysis of Nucleotide-Amyloid Interactions Reveals Selective Binding to Codon-Sized RNA.
J.Am.Chem.Soc., 145, 2023
8C8B
DownloadVisualize
BU of 8c8b by Molmil
Crystal structure of human DNA cross-link repair 1A in complex with hydroxamic acid inhibitor (compound 48).
Descriptor: 4-[[(2~{S})-1-(oxidanylamino)-1-oxidanylidene-propan-2-yl]amino]-~{N}-prop-2-enyl-quinazoline-2-carboxamide, DNA cross-link repair 1A protein, ZINC ION
Authors:Yosaatmadja, Y, Newman, J.A, Baddock, H.T, Bielinski, M, von Delft, F, Bountra, C, McHugh, P.J, Schofield, C.J, Gileadi, O.
Deposit date:2023-01-19
Release date:2024-01-31
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Cell-active small molecule inhibitors validate the SNM1A DNA repair nuclease as a cancer target.
Chem Sci, 15, 2024
8C8S
DownloadVisualize
BU of 8c8s by Molmil
Crystal structure of human DNA cross-link repair 1A in complex with hydroxamic acid inhibitor (compound 21).
Descriptor: (2~{R})-3-[6-chloranyl-2-(prop-2-enylamino)quinazolin-4-yl]-2-methyl-~{N}-oxidanyl-propanamide, DNA cross-link repair 1A protein, ZINC ION
Authors:Yosaatmadja, Y, Newman, J.A, Baddock, H.T, Bielinski, M, von Delft, F, Bountra, C, McHugh, P.J, Schofield, C.J, Gileadi, O.
Deposit date:2023-01-20
Release date:2024-01-31
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Cell-active small molecule inhibitors validate the SNM1A DNA repair nuclease as a cancer target.
Chem Sci, 15, 2024
7C0X
DownloadVisualize
BU of 7c0x by Molmil
Crystal structure of a dinucleotide-binding protein (T240A) of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CARBON DIOXIDE, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-01
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural and thermodynamic insights into the novel dinucleotide-binding protein of ABC transporter unveils its moonlighting function.
Febs J., 288, 2021
7C0Y
DownloadVisualize
BU of 7c0y by Molmil
Crystal structure of a dinucleotide-binding protein (Y246A) of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (Form I)
Descriptor: 1,2-ETHANEDIOL, CARBON DIOXIDE, GLYCEROL, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-01
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and thermodynamic insights into the novel dinucleotide-binding protein of ABC transporter unveils its moonlighting function.
Febs J., 288, 2021
7C0T
DownloadVisualize
BU of 7c0t by Molmil
Crystal structure of a dinucleotide-binding protein (N81A) of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine
Descriptor: 1,2-ETHANEDIOL, 1,3-PROPANDIOL, CARBON DIOXIDE, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-01
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural and thermodynamic insights into the novel dinucleotide-binding protein of ABC transporter unveils its moonlighting function.
Febs J., 288, 2021
7C0F
DownloadVisualize
BU of 7c0f by Molmil
Crystal structure of a dinucleotide-binding protein of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (Form I)
Descriptor: 1,2-ETHANEDIOL, 1,3-PROPANDIOL, CARBON DIOXIDE, ...
Authors:Kanaujia, S.P, Chandravanshi, M.
Deposit date:2020-05-01
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural and thermodynamic insights into the novel dinucleotide-binding protein of ABC transporter unveils its moonlighting function.
Febs J., 288, 2021
8BCR
DownloadVisualize
BU of 8bcr by Molmil
DENV3 Methyltransferase in complexed with AT-9010 and SAH
Descriptor: Genome polyprotein, PHOSPHATE ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Gauffre, P, Fattorini, V, Canard, B, Ferron, F.
Deposit date:2022-10-17
Release date:2023-03-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:AT-752 targets multiple sites and activities on the Dengue virus replication enzyme NS5.
Antiviral Res., 212, 2023
6WB2
DownloadVisualize
BU of 6wb2 by Molmil
+3 extended HIV-1 reverse transcriptase initiation complex core (displaced state)
Descriptor: HIV-1 viral RNA genome fragment, Reverse transcriptase/ribonuclease H, reverse transcriptase p51 subunit, ...
Authors:Larsen, K.P, Jackson, L.N, Kappel, K, Zhang, J, Chen, D.H, Puglisi, E.V.
Deposit date:2020-03-26
Release date:2020-06-24
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Distinct Conformational States Underlie Pausing during Initiation of HIV-1 Reverse Transcription.
J.Mol.Biol., 432, 2020
8FLU
DownloadVisualize
BU of 8flu by Molmil
Human PTH1R in complex with LA-PTH and Gs
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Cary, B.P, Belousoff, M.J, Piper, S.J, Wootten, D, Sexton, P.M.
Deposit date:2022-12-22
Release date:2023-04-26
Last modified:2023-06-14
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Molecular insights into peptide agonist engagement with the PTH receptor.
Structure, 31, 2023
8FYA
DownloadVisualize
BU of 8fya by Molmil
Cryo-EM structure of Cas1:Cas2-DEDDh:PAM-containing prespacer complex
Descriptor: Cas1, Cas2-DEDDh, DNA (28-MER), ...
Authors:Skopintsev, P, Tuck, O.T, Soczek, K.M, Doudna, J.
Deposit date:2023-01-25
Release date:2023-05-03
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Genome expansion by a CRISPR trimmer-integrase.
Nature, 618, 2023
8FYB
DownloadVisualize
BU of 8fyb by Molmil
Cryo-EM structure of Cas1:Cas2-DEDDh:half-site integration complex
Descriptor: Cas1, Cas2-DEDDh, DNA (17-MER), ...
Authors:Skopintsev, P, Tuck, O.T, Soczek, K.M, Doudna, J.
Deposit date:2023-01-25
Release date:2023-05-03
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Genome expansion by a CRISPR trimmer-integrase.
Nature, 618, 2023
8FYC
DownloadVisualize
BU of 8fyc by Molmil
Cryo-EM structure of Cas1:Cas2-DEDDh:half-site integration complex linear CRISPR repeat conformation
Descriptor: Cas1, Cas2-DEDDh, DEDDh, ...
Authors:Skopintsev, P, Tuck, O.T, Soczek, K.M, Doudna, J.
Deposit date:2023-01-25
Release date:2023-05-03
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Genome expansion by a CRISPR trimmer-integrase.
Nature, 618, 2023
8FY9
DownloadVisualize
BU of 8fy9 by Molmil
Cryo-EM structure of Cas1:Cas2-DEDDh:PAM-deficient prespacer complex
Descriptor: Cas1, Cas2-DEDDh, DNA (28-MER)
Authors:Skopintsev, P, Tuck, O.T, Soczek, K.M, Doudna, J.
Deposit date:2023-01-25
Release date:2023-05-03
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Genome expansion by a CRISPR trimmer-integrase.
Nature, 618, 2023
8FYD
DownloadVisualize
BU of 8fyd by Molmil
Cryo-EM structure of Cas1:Cas2-DEDDh:half-site integration complex bent CRISPR repeat conformation
Descriptor: Cas1, Cas2-DEDDh, DNA (13-MER), ...
Authors:Skopintsev, P, Tuck, O.T, Soczek, K.M, Doudna, J.
Deposit date:2023-01-25
Release date:2023-05-03
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Genome expansion by a CRISPR trimmer-integrase.
Nature, 618, 2023
6N2J
DownloadVisualize
BU of 6n2j by Molmil
Tetrahydropyridopyrimidines as Covalent Inhibitors of KRAS-G12C
Descriptor: 1-{4-[7-(naphthalen-1-yl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]piperazin-1-yl}propan-1-one, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Vigers, G.P.
Deposit date:2018-11-13
Release date:2018-12-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Discovery of Tetrahydropyridopyrimidines as Irreversible Covalent Inhibitors of KRAS-G12C with In Vivo Activity.
ACS Med Chem Lett, 9, 2018
8C8D
DownloadVisualize
BU of 8c8d by Molmil
Crystal structure of human DNA cross-link repair 1A in complex with hydroxamic acid inhibitor (compound 44).
Descriptor: (2~{R})-3-[6-chloranyl-2-(furan-2-ylmethylamino)quinazolin-4-yl]-2-methyl-~{N}-oxidanyl-propanamide, DNA cross-link repair 1A protein, ZINC ION
Authors:Yosaatmadja, Y, Newman, J.A, Baddock, H.T, Bielinski, M, von Delft, F, Bountra, C, McHugh, P.J, Schofield, C.J, Gileadi, O.
Deposit date:2023-01-19
Release date:2024-01-31
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Cell-active small molecule inhibitors validate the SNM1A DNA repair nuclease as a cancer target.
Chem Sci, 15, 2024
5ET2
DownloadVisualize
BU of 5et2 by Molmil
Lambda-Ru(TAP)2(dppz)]2+ bound to d(TTGGCGCCAA)
Descriptor: BARIUM ION, DNA (5'-D(*(THM)P*TP*GP*GP*CP*GP*CP*CP*AP*A)-3'), Ru(tap)2(dppz) complex
Authors:Hall, J.P, Cardin, C.J.
Deposit date:2015-11-17
Release date:2016-11-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Inosine Can Increase DNA's Susceptibility to Photo-oxidation by a Ru(II) Complex due to Structural Change in the Minor Groove.
Chemistry, 23, 2017
8FTF
DownloadVisualize
BU of 8ftf by Molmil
CryoEM strucutre of 33-mer RBM3 of the Salmonella MS-ring
Descriptor: Flagellar M-ring protein
Authors:Singh, P.S, Nakagawa, T, Cecchini, G, Iverson, T.M.
Deposit date:2023-01-12
Release date:2023-05-31
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:CryoEM structure of a post-assembly MS-ring reveals plasticity in stoichiometry and conformation.
Plos One, 18, 2023
8CEW
DownloadVisualize
BU of 8cew by Molmil
Crystal structure of human DNA cross-link repair 1A in complex with N-hydroxyimide inhibitor H1
Descriptor: 6-methoxy-2-oxidanyl-benzo[de]isoquinoline-1,3-dione, DIMETHYL SULFOXIDE, DNA cross-link repair 1A protein, ...
Authors:Newman, J.A, Yosaatmadja, Y, Baddock, H.T, Bielinski, M, von Delft, F, Bountra, C, McHugh, P.J, Schofield, C.J, Gileadi, O.
Deposit date:2023-02-02
Release date:2024-02-21
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Cell-active small molecule inhibitors validate the SNM1A DNA repair nuclease as a cancer target.
Chem Sci, 15, 2024

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon