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PDB: 149 results

5HD8
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BU of 5hd8 by Molmil
Crystal structure of disulfide cross-linked D417C ClC-ec1
Descriptor: CHLORIDE ION, FAB FRAGMENT (HEAVY CHAIN), FAB FRAGMENT (LIGHT CHAIN), ...
Authors:Mathews, I.I, Khantwal, C.M, Maduke, M.
Deposit date:2016-01-05
Release date:2017-01-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Conformational change in CLC transporters: beyond the rotation of Gluex
To be published
6MLK
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BU of 6mlk by Molmil
Structure of Thioesterase from DEBS with a thioesterase-specific antibody
Descriptor: 6-deoxyerythronolide-B synthase EryA3, modules 5 and 6, CHLORIDE ION, ...
Authors:Mathews, I.I, Li, X, Khosla, C.
Deposit date:2018-09-27
Release date:2018-10-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Discovery and Characterization of a Thioesterase-Specific Monoclonal Antibody That Recognizes the 6-Deoxyerythronolide B Synthase.
Biochemistry, 57, 2018
1BX4
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BU of 1bx4 by Molmil
STRUCTURE OF HUMAN ADENOSINE KINASE AT 1.50 ANGSTROMS
Descriptor: ADENOSINE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Mathews, I.I, Erion, M.D, Ealick, S.E.
Deposit date:1998-10-13
Release date:1999-10-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of human adenosine kinase at 1.5 A resolution.
Biochemistry, 37, 1998
3G4A
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BU of 3g4a by Molmil
Crystal structure of flavine dependant thymidylate synthase S88A mutant from Thermotoga maritima at 1.95 angstrom resolution
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, Thymidylate synthase thyX
Authors:Mathews, I.I, Lesley, S.A, Kohen, A.
Deposit date:2009-02-03
Release date:2009-04-07
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:An unusual mechanism of thymidylate biosynthesis in organisms containing the thyX gene.
Nature, 458, 2009
3G4C
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BU of 3g4c by Molmil
Flavine dependant thymidylate syntahse S88C mutant
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, Thymidylate synthase thyX
Authors:Mathews, I.I, Lesley, S.A, Kohen, A.
Deposit date:2009-02-03
Release date:2009-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:An unusual mechanism of thymidylate biosynthesis in organisms containing the thyX gene.
Nature, 458, 2009
4KAT
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BU of 4kat by Molmil
Crystal structure of FDTS from T. maritima mutant (R174K) with FAD and dUMP
Descriptor: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, Thymidylate synthase
Authors:Mathews, I.I.
Deposit date:2013-04-22
Release date:2014-03-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Flavin-Dependent Thymidylate Synthase as a Drug Target for Deadly Microbes: Mutational Study and a Strategy for Inhibitor Design.
J Bioterror Biodef, Suppl 12, 2013
4KAS
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BU of 4kas by Molmil
Crystal structure of FDTS from T. maritima mutant (H53D) with FAD and dUMP
Descriptor: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Mathews, I.I.
Deposit date:2013-04-22
Release date:2014-03-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Flavin-Dependent Thymidylate Synthase as a Drug Target for Deadly Microbes: Mutational Study and a Strategy for Inhibitor Design.
J Bioterror Biodef, Suppl 12, 2013
6APF
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BU of 6apf by Molmil
Trans-acting transferase from Disorazole synthase complexed with Citrate.
Descriptor: CITRIC ACID, DisD protein, GLYCEROL, ...
Authors:Mathews, I.I, Lyubimov, A, Soltis, M, Khosla, C, Cohen, A, Robbins, T.
Deposit date:2017-08-17
Release date:2018-04-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:The Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X-ray Free-Electron Laser Using a Room-Temperature Sample Delivery Method for Serial Crystallography.
Biochemistry, 56, 2017
6APG
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BU of 6apg by Molmil
Trans-acting transferase from Disorazole synthase with malonate
Descriptor: CALCIUM ION, DisD protein, GLYCEROL, ...
Authors:Mathews, I.I, Lyubimov, A.Y, Soltis, S.M, Khosla, C, Robbins, T, Cohen, A.E.
Deposit date:2017-08-17
Release date:2018-04-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X-ray Free-Electron Laser Using a Room-Temperature Sample Delivery Method for Serial Crystallography.
Biochemistry, 56, 2017
3RGG
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BU of 3rgg by Molmil
Crystal structure of Treponema denticola PurE bound to AIR
Descriptor: 5-AMINOIMIDAZOLE RIBONUCLEOTIDE, Phosphoribosylaminoimidazole carboxylase, PurE protein
Authors:Mathews, I.I, Starks, C.M, Kappock, T.J.
Deposit date:2011-04-08
Release date:2011-05-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Treponema denticola PurE Is a Bacterial AIR Carboxylase.
Biochemistry, 50, 2011
7MCD
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BU of 7mcd by Molmil
Crystal structure of an AI-designed TIM-barrel F15C
Descriptor: AI-designed TIM-barrel F15C
Authors:Mathews, I.I, Anand-Achim, N, Perez, C.P, Huang, P.
Deposit date:2021-04-02
Release date:2022-01-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Protein sequence design with a learned potential.
Nat Commun, 13, 2022
7MCC
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BU of 7mcc by Molmil
Crystal structure of an AI-designed TIM-barrel F2C
Descriptor: AI-designed TIM-barrel F2C, SULFATE ION
Authors:Mathews, I.I, Anand-Achim, N, Perez, C.P, Huang, P.S.
Deposit date:2021-04-02
Release date:2022-01-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Protein sequence design with a learned potential.
Nat Commun, 13, 2022
7SMJ
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BU of 7smj by Molmil
F2N structure, protein design with deep learning
Descriptor: AI-designed TIM-barrel F2N
Authors:Mathews, I.I, Anand-Achim, N, Huang, P.
Deposit date:2021-10-26
Release date:2022-03-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Protein sequence design with a learned potential.
Nat Commun, 13, 2022
7T2V
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BU of 7t2v by Molmil
SARS CoV2 Mpro C145S mutant
Descriptor: 3C-Like Protease
Authors:Mathews, I.I, Hameedi, M.A, Wakatsuki, S.
Deposit date:2021-12-06
Release date:2022-09-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structural and functional characterization of NEMO cleavage by SARS-CoV-2 3CLpro.
Nat Commun, 13, 2022
7T2T
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BU of 7t2t by Molmil
SARS-CoV2 Mpro native form
Descriptor: 3C-like proteinase
Authors:Mathews, I.I, Hameedi, M.A, Wakatsuki, S.
Deposit date:2021-12-06
Release date:2022-09-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural and functional characterization of NEMO cleavage by SARS-CoV-2 3CLpro.
Nat Commun, 13, 2022
8EUA
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BU of 8eua by Molmil
Structure of SARS-CoV2 PLpro bound to a covalent inhibitor
Descriptor: Papain-like protease nsp3, SULFATE ION, ZINC ION, ...
Authors:Mathews, I.I, Pokhrel, S, Wakatsuki, S.
Deposit date:2022-10-18
Release date:2023-04-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Potent and selective covalent inhibition of the papain-like protease from SARS-CoV-2.
Nat Commun, 14, 2023
3N0C
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BU of 3n0c by Molmil
TM0449 mutant crystal grown by hanging drop method
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, Thymidylate synthase thyX
Authors:Mathews, I.I.
Deposit date:2010-05-13
Release date:2011-05-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Diffraction study of protein crystals grown in cryoloops and micromounts.
J.Appl.Crystallogr., 43, 2010
3N0B
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BU of 3n0b by Molmil
TM0449 mutant crystals grown in loops/micromounts
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, Thymidylate synthase thyX
Authors:Mathews, I.I.
Deposit date:2010-05-13
Release date:2011-05-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Diffraction study of protein crystals grown in cryoloops and micromounts.
J.Appl.Crystallogr., 43, 2010
7SEI
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BU of 7sei by Molmil
Glucose-6-phosphate 1-dehydrogenase (K403Q)
Descriptor: Glucose-6-phosphate 1-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Mathews, I.I, Garcia, A.A, Wakatsuki, S, Mochly-Rosen, D.
Deposit date:2021-09-30
Release date:2022-08-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:Stabilization of glucose-6-phosphate dehydrogenase oligomers enhances catalytic activity and stability of clinical variants.
J.Biol.Chem., 298, 2022
7SEH
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BU of 7seh by Molmil
Glucose-6-phosphate 1-dehydrogenase (K403QdLtL)
Descriptor: Glucose-6-phosphate 1-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Mathews, I.I, Garcia, A.A, Wakatsuki, S, Mochly-Rosen, D.
Deposit date:2021-09-30
Release date:2022-08-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Stabilization of glucose-6-phosphate dehydrogenase oligomers enhances catalytic activity and stability of clinical variants.
J.Biol.Chem., 298, 2022
4GTC
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BU of 4gtc by Molmil
T. Maritima FDTS (E144R mutant) plus FAD
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Thymidylate synthase thyX
Authors:Mathews, I.I, Lesley, S.A, Kohen, A, Prabhakar, A.
Deposit date:2012-08-28
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Folate binding site of flavin-dependent thymidylate synthase.
Proc.Natl.Acad.Sci.USA, 109, 2012
4GT9
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BU of 4gt9 by Molmil
T. Maritima FDTS with FAD, dUMP and Folate.
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Mathews, I.I, Lesley, S.A, Kohen, A.
Deposit date:2012-08-28
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Folate binding site of flavin-dependent thymidylate synthase.
Proc.Natl.Acad.Sci.USA, 109, 2012
4GTD
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BU of 4gtd by Molmil
T. Maritima FDTS (E144R mutant) with FAD and dUMP
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, Thymidylate synthase thyX
Authors:Mathews, I.I, Lesley, S.A, Kohen, A, Prabhakar, A.
Deposit date:2012-08-28
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Folate binding site of flavin-dependent thymidylate synthase.
Proc.Natl.Acad.Sci.USA, 109, 2012
4GTE
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BU of 4gte by Molmil
T. Maritima FDTS (E144R mutant) with FAD and Folate
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, N-({4-[(6aR)-3-amino-1-oxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]phenyl}carbonyl)-L-glutamic acid, Thymidylate synthase thyX
Authors:Mathews, I.I, Lesley, S.A, Kohen, A, Prabhakar, A.
Deposit date:2012-08-28
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Folate binding site of flavin-dependent thymidylate synthase.
Proc.Natl.Acad.Sci.USA, 109, 2012
4GTF
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BU of 4gtf by Molmil
T. Maritima FDTS (H53A mutant) with FAD, dUMP and Folate
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Mathews, I.I, Lesley, S.A, Kohen, A.
Deposit date:2012-08-28
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Folate binding site of flavin-dependent thymidylate synthase.
Proc.Natl.Acad.Sci.USA, 109, 2012

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