Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 499 results

6R7Q
DownloadVisualize
BU of 6r7q by Molmil
Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
Authors:Shanmuganathan, V, Cheng, J, Braunger, K, Berninghausen, O, Beatrix, B, Beckmann, R.
Deposit date:2019-03-29
Release date:2019-07-10
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural and mutational analysis of the ribosome-arresting human XBP1u.
Elife, 8, 2019
6R6G
DownloadVisualize
BU of 6r6g by Molmil
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
Authors:Shanmuganathan, V, Cheng, J, Braunger, K, Berninghausen, O, Beatrix, B, Beckmann, R.
Deposit date:2019-03-27
Release date:2019-07-10
Last modified:2019-10-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural and mutational analysis of the ribosome-arresting human XBP1u.
Elife, 8, 2019
5CD9
DownloadVisualize
BU of 5cd9 by Molmil
Crystal structure of the CTD of Drosophila Oskar protein
Descriptor: Maternal effect protein oskar, SULFATE ION
Authors:Yang, N, Hu, M, Yu, Z, Wang, M, Lehmann, R, Xu, R.M.
Deposit date:2015-07-03
Release date:2015-09-02
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Structure of Drosophila Oskar reveals a novel RNA binding protein
Proc.Natl.Acad.Sci.USA, 112, 2015
2YON
DownloadVisualize
BU of 2yon by Molmil
Solution NMR structure of the C-terminal extension of two bacterial light, oxygen, voltage (LOV) photoreceptor proteins from Pseudomonas putida
Descriptor: SENSORY BOX PROTEIN
Authors:Rani, R, Hartmann, R, Lecher, J, Krauss, U, Jaeger, K, Willbold, D.
Deposit date:2012-10-25
Release date:2013-07-10
Last modified:2019-10-23
Method:SOLUTION NMR
Cite:Conservation of Dark Recovery Kinetic Parameters and Structural Features in the Pseudomonadaceae "Short" Light, Oxygen, Voltage (Lov) Protein Family: Implications for the Design of Lov-Based Optogenetic Tools.
Biochemistry, 52, 2013
6I21
DownloadVisualize
BU of 6i21 by Molmil
Flavin Analogue Sheds Light on Light-Oxygen-Voltage Domain Mechanism
Descriptor: 1,2-ETHANEDIOL, Aureochrome1-like protein, CHLORIDE ION, ...
Authors:Rizkallah, P.J, Kalvaitis, M.E, Allemann, R.K, Mart, R.J, Johnson, L.A.
Deposit date:2018-10-31
Release date:2019-05-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A Noncanonical Chromophore Reveals Structural Rearrangements of the Light-Oxygen-Voltage Domain upon Photoactivation.
Biochemistry, 58, 2019
6I24
DownloadVisualize
BU of 6i24 by Molmil
Flavin Analogue Sheds Light on Light-Oxygen-Voltage Domain Mechanism
Descriptor: 1,2-ETHANEDIOL, 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-5-O-phosphono-D-ribitol, ACETATE ION, ...
Authors:Rizkallah, P.J, Kalvaitis, M.E, Allemann, R.K, Mart, R.J, Johnson, L.A.
Deposit date:2018-10-31
Release date:2019-05-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:A Noncanonical Chromophore Reveals Structural Rearrangements of the Light-Oxygen-Voltage Domain upon Photoactivation.
Biochemistry, 58, 2019
6I20
DownloadVisualize
BU of 6i20 by Molmil
Flavin Analogue Sheds Light on Light-Oxygen-Voltage Domain Mechanism
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, ...
Authors:Rizkallah, P.J, Kalvaitis, M.E, Allemann, R.K, Mart, R.J, Johnson, L.A.
Deposit date:2018-10-31
Release date:2019-05-29
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:A Noncanonical Chromophore Reveals Structural Rearrangements of the Light-Oxygen-Voltage Domain upon Photoactivation.
Biochemistry, 58, 2019
5A8L
DownloadVisualize
BU of 5a8l by Molmil
Human eRF1 and the hCMV nascent peptide in the translation termination complex
Descriptor: 28S RIBOSOMAL RNA, 60S RIBOSOMAL PROTEIN L12, 60S RIBOSOMAL PROTEIN L17, ...
Authors:Matheisl, S, Berninghausen, O, Becker, T, Beckmann, R.
Deposit date:2015-07-16
Release date:2015-12-02
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of a Human Translation Termination Complex.
Nucleic Acids Res., 43, 2015
6I22
DownloadVisualize
BU of 6i22 by Molmil
Flavin Analogue Sheds Light on Light-Oxygen-Voltage Domain Mechanism
Descriptor: Aureochrome1-like protein, FLAVIN MONONUCLEOTIDE
Authors:Rizkallah, P.J, Kalvaitis, M.E, Allemann, R.K, Mart, R.J, Johnson, L.A.
Deposit date:2018-10-31
Release date:2019-05-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:A Noncanonical Chromophore Reveals Structural Rearrangements of the Light-Oxygen-Voltage Domain upon Photoactivation.
Biochemistry, 58, 2019
2KB6
DownloadVisualize
BU of 2kb6 by Molmil
Solution structure of onconase C87A/C104A
Descriptor: Protein P-30
Authors:Weininger, U, Schulenburg, C, Arnold, U, Ulbrich-Hofmann, R, Balbach, J.
Deposit date:2008-11-21
Release date:2009-11-24
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:Impact of the C-terminal disulfide bond on the folding and stability of onconase.
Chembiochem, 11, 2010
3PGW
DownloadVisualize
BU of 3pgw by Molmil
Crystal structure of human U1 snRNP
Descriptor: DNA 5'-D(*AP*GP*GP*TP*AP*AP*GP*TP*A)-3', Sm B, Sm G, ...
Authors:Weber, G, Trowitzsch, S, Kastner, B, Luehrmann, R, Wahl, M.C.
Deposit date:2010-11-02
Release date:2010-12-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (4.4 Å)
Cite:Functional organization of the Sm core in the crystal structure of human U1 snRNP.
Embo J., 29, 2010
2LP8
DownloadVisualize
BU of 2lp8 by Molmil
SOLUTION STRUCTURE OF AN APOPTOSIS ACTIVATING PHOTOSWITCHABLE BAK PEPTIDE BOUND to BCL-XL
Descriptor: 3,3'-(E)-diazene-1,2-diylbis{6-[(chloroacetyl)amino]benzenesulfonic acid}, Bcl-2 homologous antagonist/killer, Bcl-2-like protein 1
Authors:Wysoczanski, P, Mart, R.J, Loveridge, J.E, Williams, C, Whittaker, S.B.-M, Crump, M.P, Allemann, R.K.
Deposit date:2012-02-03
Release date:2012-04-18
Last modified:2021-08-18
Method:SOLUTION NMR
Cite:NMR Solution Structure of a Photoswitchable Apoptosis Activating Bak Peptide Bound to Bcl-x(L).
J.Am.Chem.Soc., 134, 2012
2LPC
DownloadVisualize
BU of 2lpc by Molmil
NMR STRUCTURE of Bcl-XL
Descriptor: Bcl-2-like protein 1
Authors:Wysoczanski, P, Mart, R.J, Loveridge, J.E, Williams, C, Whittaker, S.B.-M, Crump, M.P, Allemann, R.K.
Deposit date:2012-02-09
Release date:2012-03-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR Solution Structure of a Photoswitchable Apoptosis Activating Bak Peptide Bound to Bcl-x(L).
J.Am.Chem.Soc., 134, 2012
2J28
DownloadVisualize
BU of 2j28 by Molmil
MODEL OF E. COLI SRP BOUND TO 70S RNCS
Descriptor: 23S RIBOSOMAL RNA, 4.5S SIGNAL RECOGNITION PARTICLE RNA, 50S ribosomal protein L11, ...
Authors:Halic, M, Blau, M, Becker, T, Mielke, T, Pool, M.R, Wild, K, Sinning, I, Beckmann, R.
Deposit date:2006-08-16
Release date:2006-11-08
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Following the Signal Sequence from Ribosomal Tunnel Exit to Signal Recognition Particle
Nature, 444, 2006
7AFT
DownloadVisualize
BU of 7aft by Molmil
Cryo-EM structure of the signal sequence-engaged post-translational Sec translocon
Descriptor: Mating factor alpha-1,Mating factor alpha-1, Protein translocation protein SEC63, Protein transport protein SBH1, ...
Authors:Weng, T.-H, Beatrix, B, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R.
Deposit date:2020-09-20
Release date:2020-12-02
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Architecture of the active post-translational Sec translocon.
Embo J., 40, 2021
6SH3
DownloadVisualize
BU of 6sh3 by Molmil
Structure of the ADP state of the heptameric Bcs1 AAA-ATPase
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Mitochondrial chaperone BCS1
Authors:Kater, L, Beckmann, R.
Deposit date:2019-08-05
Release date:2020-02-05
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of the Bcs1 AAA-ATPase suggests an airlock-like translocation mechanism for folded proteins.
Nat.Struct.Mol.Biol., 27, 2020
6SH4
DownloadVisualize
BU of 6sh4 by Molmil
Structure of the Apo1 state of the heptameric Bcs1 AAA-ATPase.
Descriptor: Mitochondrial chaperone BCS1
Authors:Kater, L, Beckmann, R.
Deposit date:2019-08-05
Release date:2020-02-05
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structure of the Bcs1 AAA-ATPase suggests an airlock-like translocation mechanism for folded proteins.
Nat.Struct.Mol.Biol., 27, 2020
2IW3
DownloadVisualize
BU of 2iw3 by Molmil
Elongation Factor 3 in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ELONGATION FACTOR 3A, SULFATE ION
Authors:Andersen, C.B.F, Becker, T, Blau, M, Anand, M, Halic, M, Balar, B, Mielke, T, Boesen, T, Pedersen, J.S, Spahn, C.M.T, Kinzy, T.G, Andersen, G.R, Beckmann, R.
Deposit date:2006-06-26
Release date:2006-08-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of Eef3 and the Mechanism of Transfer RNA Release from the E-Site.
Nature, 443, 2006
2NBM
DownloadVisualize
BU of 2nbm by Molmil
Solution NMR structure of ligand free sterol carrier protein 2 like 2 from Aedes aegypti
Descriptor: Sterol carrier protein 2-like 2
Authors:Singarapu, K.K, Ummanni, R.
Deposit date:2016-03-07
Release date:2017-03-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution Nuclear Magnetic Resonance Studies of Sterol Carrier Protein 2 Like 2 (SCP2L2) Reveal the Insecticide Specific Structural Characteristics of SCP2 Proteins in Aedes aegypti Mosquitoes
Biochemistry, 55, 2016
2NBN
DownloadVisualize
BU of 2nbn by Molmil
Solution NMR structure of palmitated SCP2L2 from Aedes aegypti
Descriptor: PALMITIC ACID, Sterol carrier protein 2-like 2
Authors:Singarapu, K.K, Ummanni, R.
Deposit date:2016-03-07
Release date:2017-03-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution Nuclear Magnetic Resonance Studies of Sterol Carrier Protein 2 Like 2 (SCP2L2) Reveal the Insecticide Specific Structural Characteristics of SCP2 Proteins in Aedes aegypti Mosquitoes
Biochemistry, 55, 2016
6SH5
DownloadVisualize
BU of 6sh5 by Molmil
Structure of the Apo2 state of the heptameric Bcs1 AAA-ATPase
Descriptor: Mitochondrial chaperone BCS1
Authors:Kater, L, Beckmann, R.
Deposit date:2019-08-05
Release date:2020-02-05
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structure of the Bcs1 AAA-ATPase suggests an airlock-like translocation mechanism for folded proteins.
Nat.Struct.Mol.Biol., 27, 2020
7ZGO
DownloadVisualize
BU of 7zgo by Molmil
Cryo-EM structure of human NKCC1 (TM domain)
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, CHLORIDE ION, CHOLESTEROL HEMISUCCINATE, ...
Authors:Nissen, P, Fenton, R, Neumann, C, Lindtoft Rosenbaek, L, Kock Flygaard, R, Habeck, M, Lykkegaard Karlsen, J, Wang, Y, Lindorff-Larsen, K, Gad, H, Hartmann, R, Lyons, J.
Deposit date:2022-04-04
Release date:2022-10-05
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (2.55 Å)
Cite:Cryo-EM structure of the human NKCC1 transporter reveals mechanisms of ion coupling and specificity.
Embo J., 41, 2022
1ZHO
DownloadVisualize
BU of 1zho by Molmil
The structure of a ribosomal protein L1 in complex with mRNA
Descriptor: 50S ribosomal protein L1, POTASSIUM ION, mRNA
Authors:Nevskaya, N, Tishchenko, S, Volchkov, S, Kljashtorny, V, Nikonova, E, Nikonov, O, Nikulin, A, Kohrer, C, Piendl, W, Zimmermann, R, Stockley, P, Garber, M, Nikonov, S.
Deposit date:2005-04-26
Release date:2006-05-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:New insights into the interaction of ribosomal protein L1 with RNA.
J.Mol.Biol., 355, 2006
1GK6
DownloadVisualize
BU of 1gk6 by Molmil
Human vimentin coil 2B fragment linked to GCN4 leucine zipper (Z2B)
Descriptor: VIMENTIN
Authors:Strelkov, S.V, Herrmann, H, Geisler, N, Zimbelmann, R, Aebi, U, Burkhard, P.
Deposit date:2001-08-08
Release date:2002-03-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Conserved Segments 1A and 2B of the Intermediate Filament Dimer: Their Atomic Structures and Role in Filament Assembly.
Embo J., 21, 2002
1GK4
DownloadVisualize
BU of 1gk4 by Molmil
HUMAN VIMENTIN COIL 2B FRAGMENT (CYS2)
Descriptor: ACETATE ION, VIMENTIN
Authors:Strelkov, S.V, Herrmann, H, Geisler, N, Zimbelmann, R, Aebi, U, Burkhard, P.
Deposit date:2001-08-08
Release date:2002-03-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Conserved Segments 1A and 2B of the Intermediate Filament Dimer: Their Atomic Structures and Role in Filament Assembly.
Embo J., 21, 2002

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon