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PDB: 52259 results

8B6T
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BU of 8b6t by Molmil
X-ray structure of the interface optimized haloalkane dehalogenase HaloTag7 fusion to the green fluorescent protein GFP (ChemoG5-TMR) labeled with a chloroalkane tetramethylrhodamine fluorophore substrate
Descriptor: CHLORIDE ION, Green fluorescent protein,Haloalkane dehalogenase, [9-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium
Authors:Tarnawski, M, Hellweg, L, Hiblot, J.
Deposit date:2022-09-27
Release date:2023-07-26
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:A general method for the development of multicolor biosensors with large dynamic ranges.
Nat.Chem.Biol., 19, 2023
2XAN
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inositol 1,3,4,5,6-pentakisphosphate 2-kinase from A. thaliana in complex with AMP PNP and IP5
Descriptor: INOSITOL-PENTAKISPHOSPHATE 2-KINASE, MAGNESIUM ION, MYO-INOSITOL-(1,3,4,5,6)-PENTAKISPHOSPHATE, ...
Authors:Gonzalez, B, Banos-Sanz, J.I, Villate, M, Brearley, C.A, Sanz-Aparicio, J.
Deposit date:2010-03-31
Release date:2010-05-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase is a Distant Ipk Member with a Singular Inositide Binding Site for Axial 2-Oh Recognition.
Proc.Natl.Acad.Sci.USA, 107, 2010
8B6R
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BU of 8b6r by Molmil
X-ray structure of the haloalkane dehalogenase HaloTag7 labeled with a chloroalkane Cyanine3 fluorophore substrate
Descriptor: CHLORIDE ION, GLYCEROL, Haloalkane dehalogenase, ...
Authors:Tarnawski, M, Hellweg, L, Hiblot, J.
Deposit date:2022-09-27
Release date:2023-07-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A general method for the development of multicolor biosensors with large dynamic ranges.
Nat.Chem.Biol., 19, 2023
1XTZ
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BU of 1xtz by Molmil
Crystal structure of the S. cerevisiae D-ribose-5-phosphate isomerase: comparison with the archeal and bacterial enzymes
Descriptor: Ribose-5-phosphate isomerase
Authors:Graille, M, Meyer, P, Leulliot, N, Sorel, I, Janin, J, van Tilbeurgh, H, Quevillon-Cheruel, S.
Deposit date:2004-10-25
Release date:2005-08-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the S. cerevisiae D-ribose-5-phosphate isomerase: comparison with the archaeal and bacterial enzymes
Biochimie, 87, 2005
2WT7
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BU of 2wt7 by Molmil
Crystal structure of the bZIP heterodimeric complex MafB:cFos bound to DNA
Descriptor: MODIFIED T-MARE MOTIF, PHOSPHATE ION, PROTO-ONCOGENE PROTEIN C-FOS, ...
Authors:Pogenberg, V, Holton, S, Wilmanns, M.
Deposit date:2009-09-11
Release date:2010-09-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Design of a bZIP Transcription Factor with Homo/Heterodimer-Induced DNA-Binding Preference.
Structure, 22, 2014
1XU6
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BU of 1xu6 by Molmil
Structure of the C-terminal domain from Trypanosoma brucei Variant Surface Glycoprotein MITat1.2
Descriptor: Variant surface glycoprotein MITAT 1.2
Authors:Chattopadhyay, A, Jones, N.G, Nietlispach, D, Nielsen, P.R, Voorheis, H.P, Mott, H.R, Carrington, M.
Deposit date:2004-10-25
Release date:2004-11-30
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Structure of the C-terminal domain from Trypanosoma brucei variant surface glycoprotein MITat1.2
J.Biol.Chem., 280, 2004
3M4D
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BU of 3m4d by Molmil
Crystal structure of the M113N mutant of alpha-hemolysin
Descriptor: Alpha-hemolysin
Authors:Montoya, M, Gouaux, E.
Deposit date:2010-03-10
Release date:2010-05-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular bases of cyclodextrin adapter interactions with engineered protein nanopores.
Proc.Natl.Acad.Sci.USA, 107, 2010
8BHW
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BU of 8bhw by Molmil
Full-length bacterial polysaccharide co-polymerase WzzE from E. coli. C4 symmetry
Descriptor: ECA polysaccharide chain length modulation protein
Authors:Wiseman, B, Hogbom, M.
Deposit date:2022-11-01
Release date:2023-07-26
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Alternating L4 loop architecture of the bacterial polysaccharide co-polymerase WzzE.
Commun Biol, 6, 2023
2WXV
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Structure of CDK2-CYCLIN A with a Pyrazolo(4,3-h) quinazoline-3- carboxamide inhibitor
Descriptor: CELL DIVISION PROTEIN KINASE 2, CYCLIN-A2, N,1-DIMETHYL-8-{[1-(METHYLSULFONYL)PIPERIDIN-4-YL]AMINO}-1H-PYRAZOLO[4,3-H]QUINAZOLINE-3-CARBOXAMIDE, ...
Authors:Traquandi, G, Ciomei, M, Ballinari, D, Casale, E, Colombo, N, Croci, V, Fiorentini, F, Isacchi, A, Longo, A, Mercurio, C, Panzeri, A, Pastori, W, Pevarello, P, Volpi, D, Roussel, P, Vulpetti, A, Brasca, M.G.
Deposit date:2009-11-10
Release date:2010-02-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Identification of Potent Pyrazolo[4,3-H]Quinazoline-3-Carboxamides as Multi-Cyclin-Dependent Kinase Inhibitors.
J.Med.Chem., 53, 2010
5A95
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BU of 5a95 by Molmil
Crystal structure of beta-glucanase SdGluc5_26A from Saccharophagus degradans in complex with tetrasaccharide A, form 2
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Sulzenbacher, G, Lafond, M, Freyd, T, Henrissat, B, Coutinho, R.M, Berrin, J.G, Garron, M.L.
Deposit date:2015-07-17
Release date:2016-01-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity Towards Beta-Glucans
J.Biol.Chem., 291, 2016
8B42
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Structure of heteromeric LRRC8A/C Volume-Regulated Anion Channel.
Descriptor: Volume-regulated anion channel subunit LRRC8A, Volume-regulated anion channel subunit LRRC8C
Authors:Sawicka, M, Dutzler, R.
Deposit date:2022-09-19
Release date:2022-12-14
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Structure of a volume-regulated heteromeric LRRC8A/C channel.
Nat.Struct.Mol.Biol., 30, 2023
4GPX
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BU of 4gpx by Molmil
Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)
Descriptor: (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(hydroxymethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside, RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')
Authors:Kondo, J, Koganei, M, Maianti, J.P, Ly, V.L, Hanessian, S.
Deposit date:2012-08-22
Release date:2013-04-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of a bioactive 6'-hydroxy variant of sisomicin bound to the bacterial and protozoal ribosomal decoding sites
Chemmedchem, 8, 2013
3M61
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BU of 3m61 by Molmil
Crystal structure of complex of urokinase and a upain-1 variant(W3A) in pH4.6 condition
Descriptor: Urokinase-type plasminogen activator, upain-1 W3A
Authors:Jiang, L, Yuan, C, Wind, T, Andreasen, P.A, Chen, L, Meehan, E.J, Huang, M.
Deposit date:2010-03-15
Release date:2010-04-07
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal structure of complex of urokinase and a upain-1 variant(W3A) in pH4.6 condition
TO BE PUBLISHED
3M6E
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BU of 3m6e by Molmil
F80A mutant of the Urea Transporter from Desulfovibrio Vulgaris
Descriptor: GOLD ION, Putative urea transporter
Authors:Levin, E.J, Zhou, M, New York Consortium on Membrane Protein Structure (NYCOMPS)
Deposit date:2010-03-15
Release date:2010-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:F80A mutant of the Urea Transporter from Desulfovibrio Vulgaris
To be Published
3M2V
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BU of 3m2v by Molmil
Structural Insight into Methyl-Coenzyme M Reductase Chemistry using Coenzyme B Analogues
Descriptor: 1,2-ETHANEDIOL, 1-THIOETHANESULFONIC ACID, ACETATE ION, ...
Authors:Cedervall, P.E, Dey, M, Ragsdale, S.W, Wilmot, C.M.
Deposit date:2010-03-08
Release date:2010-09-15
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insight into methyl-coenzyme M reductase chemistry using coenzyme B analogues.
Biochemistry, 49, 2010
8B1A
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BU of 8b1a by Molmil
DtpB-Nb132-AI
Descriptor: ALA-ILE, DECANE, DODECANE, ...
Authors:Killer, M, Finocchio, G, Lei, J, Jungnickel, K, Kotov, V, Steinke, J, Bartels, K, Strauss, J, Dupeux, F, Humm, A.S, Cornaciu, I, Marquez, J, Pardon, E, Steyeart, J, Loew, C.
Deposit date:2022-09-09
Release date:2023-08-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition.
Cell Rep, 42, 2023
4GZB
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BU of 4gzb by Molmil
Crystal structure of native AmpC beta-lactamase from Pseudomonas aeruginosa PAO1
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase
Authors:Benvenuti, M, De Luca, F, Docquier, J.D, Mangani, S.
Deposit date:2012-09-06
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural insight into potent broad-spectrum inhibition with reversible recyclization mechanism: avibactam in complex with CTX-M-15 and Pseudomonas aeruginosa AmpC beta-lactamases
Antimicrob.Agents Chemother., 57, 2013
2WX2
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BU of 2wx2 by Molmil
X-RAY STRUCTURE OF CYP51 FROM THE HUMAN PATHOGEN TRYPANOSOMA CRUZI IN COMPLEX WITH FLUCONAZOLE
Descriptor: 2-(2,4-DIFLUOROPHENYL)-1,3-DI(1H-1,2,4-TRIAZOL-1-YL)PROPAN-2-OL, LANOSTEROL 14-ALPHA-DEMETHYLASE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Chen, C.-K, Leung, S.S.F, Guilbert, C, Jacobson, M, McKerrow, J.H, Podust, L.M.
Deposit date:2009-10-31
Release date:2009-11-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structural Characterization of Cyp51 from Trypanosoma Cruzi and Trypanosoma Brucei Bound to the Antifungal Drugs Posaconazole and Fluconazole
Plos Negl Trop Dis, 4, 2010
8B1E
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BU of 8b1e by Molmil
DtpB-Nb132-AQ
Descriptor: ALA-GLN, DECANE, DODECANE, ...
Authors:Killer, M, Finocchio, G, Lei, J, Jungnickel, K, Kotov, V, Steinke, J, Bartels, K, Strauss, J, Dupeux, F, Humm, A.S, Cornaciu, I, Marquez, J, Pardon, E, Steyeart, J, Loew, C.
Deposit date:2022-09-09
Release date:2023-08-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition.
Cell Rep, 42, 2023
3M4G
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BU of 3m4g by Molmil
H57A HFQ from Pseudomonas Aeruginosa
Descriptor: Protein hfq, ZINC ION
Authors:Moskaleva, O, Melnik, B, Gabdulkhakov, A, Garber, M, Nikonov, S, Stolboushkina, E, Nikulin, A.
Deposit date:2010-03-11
Release date:2010-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The structures of mutant forms of Hfq from Pseudomonas aeruginosa reveal the importance of the conserved His57 for the protein hexamer organization.
Acta Crystallogr.,Sect.F, 66, 2010
8B1G
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BU of 8b1g by Molmil
DtpB-Nb132-AW
Descriptor: ALA-TRP, DECANE, DODECANE, ...
Authors:Killer, M, Finocchio, G, Lei, J, Jungnickel, K, Kotov, V, Steinke, J, Bartels, K, Strauss, J, Dupeux, F, Humm, A.S, Cornaciu, I, Marquez, J, Pardon, E, Steyeart, J, Loew, C.
Deposit date:2022-09-09
Release date:2023-08-09
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition.
Cell Rep, 42, 2023
3M4Z
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BU of 3m4z by Molmil
Crystal Structure of B. subtilis ferrochelatase with Cobalt bound at the active site
Descriptor: CHLORIDE ION, COBALT (II) ION, Ferrochelatase, ...
Authors:Soderberg, C.A.G, Hansson, M.D, Sreekanth, R, Al-Karadaghi, S, Hansson, M.
Deposit date:2010-03-12
Release date:2010-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Bacterial ferrochelatase goes human: Tyr13 determines the apparent metal specificity of Bacillus subtilis ferrochelatase
To be Published
8BLY
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BU of 8bly by Molmil
Structure of the GroEL-ATP complex plunge-frozen 13 ms after mixing with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL, MAGNESIUM ION
Authors:Dhurandhar, M, Torino, S, Efremov, R.
Deposit date:2022-11-10
Release date:2023-08-09
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
8B1K
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BU of 8b1k by Molmil
DtpB-Nb132-NV
Descriptor: ASN-VAL, DECANE, DODECANE, ...
Authors:Killer, M, Finocchio, G, Lei, J, Jungnickel, K, Kotov, V, Steinke, J, Bartels, K, Strauss, J, Dupeux, F, Humm, A.S, Cornaciu, I, Marquez, J, Pardon, E, Steyeart, J, Loew, C.
Deposit date:2022-09-09
Release date:2023-08-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Plasticity of the binding pocket in peptide transporters underpins promiscuous substrate recognition.
Cell Rep, 42, 2023
4YSZ
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Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with 2-iodo-N-[3-(1-methylethoxy)phenyl]benzamide
Descriptor: 2-iodo-N-[3-(1-methylethoxy)phenyl]benzamide, Cytochrome b-large subunit, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Harada, S, Shiba, T, Sato, D, Yamamoto, A, Nagahama, M, Yone, A, Inaoka, D.K, Sakamoto, K, Inoue, M, Honma, T, Kita, K.
Deposit date:2015-03-17
Release date:2015-08-05
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural Insights into the Molecular Design of Flutolanil Derivatives Targeted for Fumarate Respiration of Parasite Mitochondria
Int J Mol Sci, 16, 2015

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