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PDB: 446 results

2VFX
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BU of 2vfx by Molmil
Structure of the Symmetric Mad2 Dimer
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, CHLORIDE ION, ...
Authors:Yang, M, Li, B, Liu, C.-J, Tomchick, D.R, Machius, M, Rizo, J, Yu, H, Luo, X.
Deposit date:2007-11-05
Release date:2008-03-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Insights Into MAD2 Regulation in the Spindle Checkpoint Revealed by the Crystal Structure of the Symmetric MAD2 Dimer.
Plos Biol., 6, 2008
8HIF
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BU of 8hif by Molmil
One asymmetric unit of Singapore grouper iridovirus capsid
Descriptor: Major capsid protein, Penton protein (VP14), VP137, ...
Authors:Zhao, Z.N, Liu, C.C, Zhu, D.J, Qi, J.X, Zhang, X.Z, Gao, G.F.
Deposit date:2022-11-20
Release date:2023-04-19
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Near-atomic architecture of Singapore grouper iridovirus and implications for giant virus assembly.
Nat Commun, 14, 2023
8H03
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BU of 8h03 by Molmil
Major polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a preclinical Parkinson's disease patient
Descriptor: Alpha-synuclein
Authors:Fan, Y, Sun, Y.P, Wang, J, Liu, C.
Deposit date:2022-09-28
Release date:2022-11-30
Last modified:2023-01-25
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Conformational change of alpha-synuclein fibrils in cerebrospinal fluid from different clinical phases of Parkinson's disease.
Structure, 31, 2023
8H04
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Major polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a postmortal Parkinson's disease patient
Descriptor: Alpha-synuclein
Authors:Fan, Y, Sun, Y.P, Wang, J, Liu, C.
Deposit date:2022-09-28
Release date:2022-11-30
Last modified:2023-01-25
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Conformational change of alpha-synuclein fibrils in cerebrospinal fluid from different clinical phases of Parkinson's disease.
Structure, 31, 2023
8H05
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BU of 8h05 by Molmil
Minor polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a postmortal Parkinson's disease patient
Descriptor: Alpha-synuclein
Authors:Fan, Y, Sun, Y.P, Wang, J, Liu, C.
Deposit date:2022-09-28
Release date:2022-11-30
Last modified:2023-01-25
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Conformational change of alpha-synuclein fibrils in cerebrospinal fluid from different clinical phases of Parkinson's disease.
Structure, 31, 2023
3NRI
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BU of 3nri by Molmil
Crystal structure of the C(30) carotenoid dehydrosqualene synthase from S. aureus complexed with dehydrosqualene (DHS)
Descriptor: (6E,10R,13S,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,11,13,14,18,22-octaene, Dehydrosqualene synthase
Authors:Lin, F.-Y, Liu, C.-I, Liu, Y.-L, Wang, K, Zhang, Y, Oldfield, E.
Deposit date:2010-06-30
Release date:2010-12-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Mechanism of action and inhibition of dehydrosqualene synthase.
Proc.Natl.Acad.Sci.USA, 107, 2010
7BX7
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BU of 7bx7 by Molmil
Cryo-EM structure of amyloid fibril formed by hnRNPA1 low complexity domain
Descriptor: Heterogeneous nuclear ribonucleoprotein A1
Authors:Sun, Y.P, Zhao, K, Liu, C, Li, D.
Deposit date:2020-04-17
Release date:2020-11-18
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:The nuclear localization sequence mediates hnRNPA1 amyloid fibril formation revealed by cryoEM structure.
Nat Commun, 11, 2020
7UGR
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BU of 7ugr by Molmil
Crystal structure of hyperfolder YFP
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Hyperfolder yellow fluorescent protein, ...
Authors:Campbell, B.C, Liu, C.F, Petsko, G.A.
Deposit date:2022-03-25
Release date:2022-10-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Chemically stable fluorescent proteins for advanced microscopy.
Nat.Methods, 19, 2022
7YNP
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BU of 7ynp by Molmil
BF227-bound alpha-synuclein fibrils
Descriptor: 5-[(~{E})-2-(6-methoxy-1,3-benzoxazol-2-yl)ethenyl]-~{N},~{N}-dimethyl-1,3-thiazol-2-amine, Alpha-synuclein
Authors:Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
Deposit date:2022-07-31
Release date:2023-08-02
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:BF227-bound alpha-synuclein fibrils
To Be Published
7YNN
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BU of 7ynn by Molmil
ThT-bound alpha-synuclein fibrils conformation 2
Descriptor: 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium, Alpha-synuclein
Authors:Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
Deposit date:2022-07-31
Release date:2023-08-02
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:ThT-bound alpha-synuclein fibrils conformation 2
To Be Published
7YNL
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BU of 7ynl by Molmil
EB-bound alpha-synuclein fibrils
Descriptor: 4-azanyl-6-[[4-[4-[(~{E})-(8-azanyl-1-oxidanyl-5,7-disulfo-naphthalen-2-yl)diazenyl]-3-methyl-phenyl]-2-methyl-phenyl]diazenyl]-5-oxidanyl-naphthalene-1,3-disulfonic acid, Alpha-synuclein
Authors:Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
Deposit date:2022-07-31
Release date:2023-08-02
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:EB-bound alpha-synuclein fibrils
To Be Published
7YNO
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BU of 7yno by Molmil
PiB-bound alpha-synuclein fibrils conformation 1
Descriptor: 2-[4-(methylamino)phenyl]-1,3-benzothiazol-6-ol, Alpha-synuclein
Authors:Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
Deposit date:2022-07-31
Release date:2023-08-02
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:PiB-bound alpha-synuclein fibrils conformation 1
To Be Published
7YNM
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BU of 7ynm by Molmil
ThT-bound alpha-synuclein fibrils conformation 1
Descriptor: 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium, Alpha-synuclein
Authors:Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
Deposit date:2022-07-31
Release date:2023-08-02
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:ThT-bound alpha-synuclein fibrils conformation 1
To Be Published
6LRQ
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BU of 6lrq by Molmil
Cryo-EM structure of A53T alpha-synuclein amyloid fibril
Descriptor: Alpha-synuclein
Authors:Sun, Y.P, Zhao, K, Liu, C.
Deposit date:2020-01-16
Release date:2020-04-08
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.49 Å)
Cite:Cryo-EM structure of full-length alpha-synuclein amyloid fibril with Parkinson's disease familial A53T mutation.
Cell Res., 30, 2020
7YNF
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BU of 7ynf by Molmil
CCA-bound alpha-synuclein fibrils
Descriptor: Alpha-synuclein, copper;trisodium;18-(2-carboxylatoethyl)-20-(carboxylatomethyl)-12-ethenyl-7-ethyl-3,8,13,17-tetramethyl-17,18-dihydroporphyrin-21,23-diide-2-carboxylate
Authors:Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
Deposit date:2022-07-30
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:CCA-bound alpha-synuclein fibrils
To Be Published
1Z8D
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BU of 1z8d by Molmil
Crystal Structure of Human Muscle Glycogen Phosphorylase a with AMP and Glucose
Descriptor: ADENINE, ADENOSINE MONOPHOSPHATE, Glycogen phosphorylase, ...
Authors:Lukacs, C.M, Oikonomakos, N.G, Crowther, R.L, Hong, L.N, Kammlott, R.U, Levin, W, Li, S, Liu, C.M, Lucas-McGady, D, Pietranico, S, Reik, L.
Deposit date:2005-03-30
Release date:2006-03-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of human muscle glycogen phosphorylase a with bound glucose and AMP: An intermediate conformation with T-state and R-state features.
Proteins, 63, 2006
8GZ9
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BU of 8gz9 by Molmil
Cryo-EM structure of Abeta2 fibril polymorph2
Descriptor: peptide self-assembled antimicrobial fibrils
Authors:Xia, W.C, Zhang, M.M, Liu, C.
Deposit date:2022-09-26
Release date:2023-09-20
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:Engineering of antimicrobial peptide fibrils with feedback degradation of bacterial-secreted enzymes.
Chem Sci, 14, 2023
8GZ8
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BU of 8gz8 by Molmil
Cryo-EM structure of Abeta2 fibril polymorph1
Descriptor: peptide self-assembled antimicrobial fibrils
Authors:Xia, W.C, Zhang, M.M, Liu, C.
Deposit date:2022-09-26
Release date:2023-09-20
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.35 Å)
Cite:Engineering of antimicrobial peptide fibrils with feedback degradation of bacterial-secreted enzymes.
Chem Sci, 14, 2023
7V3P
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BU of 7v3p by Molmil
Cryo-EM structure of the IGF1R/insulin complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Insulin A chain, Insulin B chain, ...
Authors:Zhang, J, Liu, C, Zhang, X, Wei, T, Wu, C.
Deposit date:2021-08-11
Release date:2022-08-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure of the IGF1R/insulin complex
To Be Published
7UGS
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BU of 7ugs by Molmil
Crystal structure of monomeric hyperfolder YFP (K206V mutant)
Descriptor: Hyperfolder yellow fluorescent protein
Authors:Campbell, B.C, Liu, C.F, Petsko, G.A.
Deposit date:2022-03-25
Release date:2022-10-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Chemically stable fluorescent proteins for advanced microscopy.
Nat.Methods, 19, 2022
6ODB
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BU of 6odb by Molmil
Crystal structure of HDAC8 in complex with compound 3
Descriptor: GLYCEROL, Histone deacetylase 8, N-{2-[(1E)-3-(hydroxyamino)-3-oxoprop-1-en-1-yl]phenyl}-2-phenoxybenzamide, ...
Authors:Zheng, X, Conti, C, Caravella, J, Zablocki, M.-M, Bair, K, Barczak, N, Han, B, Lancia Jr, D, Liu, C, Martin, M, Ng, P.Y, Rudnitskaya, A, Thomason, J.J, Garcia-Dancey, R, Hardy, C, Lahdenranta, J, Leng, C, Li, P, Pardo, E, Saldahna, A, Tan, T, Toms, A.V, Yao, L, Zhang, C.
Deposit date:2019-03-26
Release date:2020-04-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-based Discovery of Novel N-(E)-N-Hydroxy-3-(2-(2-oxoimidazolidin-1-yl)phenyl)acrylamides as Potent and Selective HDAC8 inhibitors
To Be Published
7YNR
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BU of 7ynr by Molmil
C05-03-bound alpha-synuclein fibrils
Descriptor: Alpha-synuclein
Authors:Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
Deposit date:2022-07-31
Release date:2023-08-02
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:C05-03-bound alpha-synuclein fibrils
To Be Published
6LM3
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BU of 6lm3 by Molmil
Neutralization mechanism of a monoclonal antibody targeting a porcine circovirus type 2 Cap protein conformational epitope
Descriptor: Capsid protein
Authors:Sun, Z, Huang, L, Xia, D, Wei, Y, Sun, E, Zhu, H, Bian, H, Wu, H, Feng, L, Wang, J, Liu, C.
Deposit date:2019-12-24
Release date:2020-02-12
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Neutralization Mechanism of a Monoclonal Antibody Targeting a Porcine Circovirus Type 2 Cap Protein Conformational Epitope.
J.Virol., 94, 2020
3HSF
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BU of 3hsf by Molmil
HEAT SHOCK TRANSCRIPTION FACTOR (HSF)
Descriptor: HEAT SHOCK TRANSCRIPTION FACTOR
Authors:Damberger, F.F, Pelton, J.G, Liu, C, Cho, H, Harrison, C.J, Nelson, H.C.M, Wemmer, D.E.
Deposit date:1995-08-07
Release date:1995-11-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Refined solution structure and dynamics of the DNA-binding domain of the heat shock factor from Kluyveromyces lactis.
J.Mol.Biol., 254, 1995
4ZBP
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BU of 4zbp by Molmil
Crystal structure of the AMPCPR-bound AtNUDT7
Descriptor: ALPHA-BETA METHYLENE ADP-RIBOSE, Nudix hydrolase 7, SULFATE ION
Authors:Tang, Q, Liu, C, Zhong, C, Ding, J.
Deposit date:2015-04-15
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of Arabidopsis thaliana Nudix Hydrolase NUDT7 Reveal a Previously Unobserved Conformation.
Mol Plant, 8, 2015

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