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PDB: 939 results

6JI3
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BU of 6ji3 by Molmil
BRD4-BD1 bound with ligand 103
Descriptor: (3~{R})-4-cyclopropyl-1,3-dimethyl-6-(1~{H}-pyrrol-2-yl)-3~{H}-quinoxalin-2-one, Bromodomain-containing protein 4
Authors:Cao, D.Y, Li, Y.L, Du, Z.Y, Li, J, Xiong, B.
Deposit date:2019-02-20
Release date:2020-02-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:brd4-bd1 bound with ligand 103
To Be Published
3D2R
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BU of 3d2r by Molmil
Crystal structure of pyruvate dehydrogenase kinase isoform 4 in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Kato, M, Wynn, R.M, Chuang, L.C, Tso, S.-C, Li, J, Chuang, D.T.
Deposit date:2008-05-08
Release date:2008-08-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Pyruvate Dehydrogenase Kinase-4 Structures Reveal a Metastable Open Conformation Fostering Robust Core-free Basal Activity.
J.Biol.Chem., 283, 2008
1Z5T
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BU of 1z5t by Molmil
Crystal Structure of [d(CGCGAA(Z3dU)(Z3dU)CGCG)]2, Z3dU:5-(3-aminopropyl)-2'-deoxyuridine, in presence of thallium I.
Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*(ZDU)P*(ZDU)P*CP*GP*CP*G)-3', SPERMINE, THALLIUM (I) ION
Authors:Moulaei, T, Maehigashi, T, Lountos, G.T, Komeda, S, Watkins, D, Stone, M.P, Marky, L.A, Li, J.S, Gold, B, Williams, L.D.
Deposit date:2005-03-19
Release date:2005-07-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of B-DNA with cations tethered in the major groove.
Biochemistry, 44, 2005
8IU2
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BU of 8iu2 by Molmil
Cryo-EM structure of Long-wave-sensitive opsin 1
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
Authors:Peng, Q, Cheng, X.Y, Li, J, Lu, Q.Y, Li, Y.Y, Zhang, J.
Deposit date:2023-03-23
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Cryo-EM structure of Long-wave-sensitive opsin 1
To Be Published
5JHG
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BU of 5jhg by Molmil
Crystal structure of the complex between the human RhoA and the DH/PH domain of human ARHGEF11
Descriptor: GLYCEROL, Rho guanine nucleotide exchange factor 11, Transforming protein RhoA
Authors:Wang, R, Chen, Q, Zhang, H, Yan, Z, Li, J, Miao, L, Wang, F.
Deposit date:2016-04-21
Release date:2017-04-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystallization and preliminary X-ray crystallographic analysis of a small GTPase RhoA bound with its inhibitor and ARHGEF11
To Be Published
6JI4
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BU of 6ji4 by Molmil
brd4-bd1 bound with ligand 138
Descriptor: (3R)-4-cyclopropyl-1,3-dimethyl-6-[5-methyl-4-(4-methylphenyl)-4H-1,2,4-triazol-3-yl]-3,4-dihydroquinoxalin-2(1H)-one, Bromodomain-containing protein 4
Authors:Cao, D.Y, Li, Y.L, Du, Z.Y, Li, J, Xiong, B.
Deposit date:2019-02-20
Release date:2020-02-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:brd4-bd1 bound with ligand 138
To Be Published
6LTJ
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BU of 6ltj by Molmil
Structure of nucleosome-bound human BAF complex
Descriptor: AT-rich interactive domain-containing protein 1A, Actin, cytoplasmic 1, ...
Authors:He, S, Wu, Z, Tian, Y, Yu, Z, Yu, J, Wang, X, Li, J, Liu, B, Xu, Y.
Deposit date:2020-01-22
Release date:2020-02-12
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of nucleosome-bound human BAF complex.
Science, 367, 2020
5GVA
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BU of 5gva by Molmil
WD40 domain of human AND-1
Descriptor: WD repeat and HMG-box DNA-binding protein 1
Authors:Guan, C.C, Li, J.
Deposit date:2016-09-04
Release date:2017-04-19
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:The structure and polymerase-recognition mechanism of the crucial adaptor protein AND-1 in the human replisome
J. Biol. Chem., 292, 2017
6JI5
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BU of 6ji5 by Molmil
brd4-bd1 bound with ligand 167
Descriptor: (3R)-4-cyclopentyl-6-[1-(2,4-dimethylphenyl)-3-(4-methylpiperazine-1-carbonyl)-1H-1,2,4-triazol-5-yl]-1,3-dimethyl-3,4-dihydroquinoxalin-2(1H)-one, Bromodomain-containing protein 4
Authors:Cao, D.Y, Li, Y.L, Du, Z.Y, Li, J, Xiong, B.
Deposit date:2019-02-20
Release date:2020-02-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:brd4-bd1 bound with ligand 167
To Be Published
2KRG
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BU of 2krg by Molmil
Solution Structure of human sodium/ hydrogen exchange regulatory factor 1(150-358)
Descriptor: Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Authors:Bhattacharya, S, Dai, Z, Li, J, Baxter, S, Callaway, D.J.E, Cowburn, D, Bu, Z.
Deposit date:2009-12-17
Release date:2009-12-29
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A conformational switch in the scaffolding protein NHERF1 controls autoinhibition and complex formation.
J.Biol.Chem., 285, 2010
6JRL
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BU of 6jrl by Molmil
Crystal structure of Drosophila alpha methyldopa-resistant protein/3,4-dihydroxyphenylacetaldehyde synthase
Descriptor: 3,4-dihydroxyphenylacetaldehyde synthase
Authors:Wei, S, Vavrick, C.J, Guan, H, Liao, C, Robinson, H, Liang, J, Wang, D, Han, Q, Li, J.
Deposit date:2019-04-04
Release date:2019-04-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for the bifunctional mechanism of Drosophila alpha methyldopa-resistant protein/3,4-dihydroxyphenylacetaldehyde synthase
To Be Published
5GVB
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BU of 5gvb by Molmil
SepB domain of human AND-1
Descriptor: WD repeat and HMG-box DNA-binding protein 1
Authors:Guan, C.C, Li, J.
Deposit date:2016-09-05
Release date:2017-04-19
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The structure and polymerase-recognition mechanism of the crucial adaptor protein AND-1 in the human replisome.
J. Biol. Chem., 292, 2017
3EXF
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BU of 3exf by Molmil
Crystal structure of the pyruvate dehydrogenase (E1p) component of human pyruvate dehydrogenase complex
Descriptor: MAGNESIUM ION, POTASSIUM ION, Pyruvate dehydrogenase E1 component subunit alpha, ...
Authors:Kato, M, Wynn, R.M, Chuang, J.L, Tso, S.-C, Machius, M, Li, J, Chuang, D.T.
Deposit date:2008-10-16
Release date:2008-11-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.998 Å)
Cite:Structural basis for inactivation of the human pyruvate dehydrogenase complex by phosphorylation: role of disordered phosphorylation loops.
Structure, 16, 2008
3EXG
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BU of 3exg by Molmil
Crystal structure of the pyruvate dehydrogenase (E1p) component of human pyruvate dehydrogenase complex
Descriptor: POTASSIUM ION, Pyruvate dehydrogenase E1 component subunit alpha, somatic form, ...
Authors:Kato, M, Wynn, R.M, Chuang, J.L, Tso, S.-C, Machius, M, Li, J, Chuang, D.T.
Deposit date:2008-10-16
Release date:2008-11-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.011 Å)
Cite:Structural basis for inactivation of the human pyruvate dehydrogenase complex by phosphorylation: role of disordered phosphorylation loops.
Structure, 16, 2008
4JFG
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BU of 4jfg by Molmil
Crystal structure of sfGFP-66-HqAla
Descriptor: CESIUM ION, Green fluorescent protein, quinolin-8-ol
Authors:Wang, J, Liu, X, Li, J, Zhang, W, Hu, M, Zhou, J.
Deposit date:2013-02-28
Release date:2013-10-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.001 Å)
Cite:Significant expansion of the fluorescent protein chromophore through the genetic incorporation of a metal-chelating unnatural amino acid.
Angew.Chem.Int.Ed.Engl., 52, 2013
3N2Y
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BU of 3n2y by Molmil
Crystal structure of tyrosyl-tRNA synthetase complexed with p-(2-tetrazolyl)-phenylalanine
Descriptor: 4-(2H-tetrazol-2-yl)-L-phenylalanine, Tyrosyl-tRNA synthetase
Authors:Wu, M, Li, J, Zang, J.
Deposit date:2010-05-19
Release date:2010-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:A biosynthetic route to photoclick chemistry on proteins
J.Am.Chem.Soc., 132, 2010
2FA5
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BU of 2fa5 by Molmil
The crystal structure of an unliganded multiple antibiotic-resistance repressor (MarR) from Xanthomonas campestris
Descriptor: CHLORIDE ION, transcriptional regulator marR/emrR family
Authors:Chin, K.H, Tu, Z.L, Li, J.N, Chou, C.C, Wang, A.H.J, Chou, S.H.
Deposit date:2005-12-06
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The crystal structure of XC1739: a putative multiple antibiotic-resistance repressor (MarR) from Xanthomonas campestris at 1.8 A resolution
Proteins, 65, 2006
4JCL
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BU of 4jcl by Molmil
Crystal structure of Alpha-CGT from Paenibacillus macerans at 1.7 Angstrom resolution
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Wu, L, Zhou, J, Wu, J, Li, J, Chen, J.
Deposit date:2013-02-22
Release date:2014-02-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of Alpha-Cgt from Paenibacillus Macerans at 1.7 Angstrom Resolution
To be Published
1W2X
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BU of 1w2x by Molmil
Crystal structure of the carboxyltransferase domain of acetyl- coenzyme A carboxylase in complex with CP-640186
Descriptor: (3R)-1'-(9-ANTHRYLCARBONYL)-3-(MORPHOLIN-4-YLCARBONYL)-1,4'-BIPIPERIDINE, ACETYL-COA CARBOXYLASE
Authors:Zhang, H, Tweel, B, Li, J, Tong, L.
Deposit date:2004-07-09
Release date:2004-09-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of the Carboxyltransferase Domain of Acetyl-Coenzyme a Carboxylase in Complex with Cp-640186
Structure, 12, 2004
7C82
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BU of 7c82 by Molmil
Crystal structure of AlinE4, a SGNH-hydrolase family esterase
Descriptor: ACETATE ION, ALANINE, CADMIUM ION, ...
Authors:Li, Z, Li, J.
Deposit date:2020-05-28
Release date:2020-07-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Structure-guided protein engineering increases enzymatic activities of the SGNH family esterases.
Biotechnol Biofuels, 13, 2020
4GF6
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BU of 4gf6 by Molmil
crystal structure of GFP with cuprum bound at the Incorporated metal Chelating Amino Acid PYZ151
Descriptor: CALCIUM ION, COPPER (II) ION, green fluorescent protein
Authors:Dong, J, Liu, X, Li, J, Wang, J, Gong, W.
Deposit date:2012-08-03
Release date:2012-08-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Genetic incorporation of a metal-chelating amino Acid as a probe for protein electron transfer.
Angew.Chem.Int.Ed.Engl., 51, 2012
4GES
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BU of 4ges by Molmil
crystal structure of GFP-TYR151PYZ with an unnatural amino acid incorporation
Descriptor: Green fluorescent protein
Authors:Dong, J, Liu, X, Li, J, Wang, J, Gong, W.
Deposit date:2012-08-02
Release date:2012-08-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Genetic incorporation of a metal-chelating amino Acid as a probe for protein electron transfer.
Angew.Chem.Int.Ed.Engl., 51, 2012
7VLN
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BU of 7vln by Molmil
NSD2-PWWP1 domain bound with an imidazol-5-yl benzonitrile compound
Descriptor: 4-[5-[4-(aminomethyl)-2,6-dimethoxy-phenyl]-3-methyl-imidazol-4-yl]benzenecarbonitrile, Histone-lysine N-methyltransferase NSD2
Authors:Cao, D.Y, Li, Y.L, Li, J, Xiong, B.
Deposit date:2021-10-05
Release date:2022-07-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Structure-Based Discovery of a Series of NSD2-PWWP1 Inhibitors.
J.Med.Chem., 65, 2022
6AJH
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BU of 6ajh by Molmil
Crystal structure of mycolic acid transporter MmpL3 from Mycobacterium smegmatis complexed with AU1235
Descriptor: (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID, 1-(2-adamantyl)-3-[2,3,4-tris(fluoranyl)phenyl]urea, Drug exporters of the RND superfamily-like protein,Endolysin, ...
Authors:Zhang, B, Li, J, Yang, X.L, Wu, L.J, Yang, H.T, Rao, Z.H.
Deposit date:2018-08-27
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.818 Å)
Cite:Crystal Structures of Membrane Transporter MmpL3, an Anti-TB Drug Target.
Cell, 176, 2019
3EXI
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BU of 3exi by Molmil
Crystal structure of the pyruvate dehydrogenase (E1p) component of human pyruvate dehydrogenase complex with the subunit-binding domain (SBD) of E2p, but SBD cannot be modeled into the electron density
Descriptor: CHLORIDE ION, POTASSIUM ION, Pyruvate dehydrogenase E1 component subunit alpha, ...
Authors:Kato, M, Wynn, R.M, Chuang, J.L, Tso, S.-C, Machius, M, Li, J, Chuang, D.T.
Deposit date:2008-10-16
Release date:2008-11-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for inactivation of the human pyruvate dehydrogenase complex by phosphorylation: role of disordered phosphorylation loops.
Structure, 16, 2008

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