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PDB: 750 results

3T03
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Crystal structure of PPAR gamma ligand binding domain in complex with a novel partial agonist GQ-16
Descriptor: (5Z)-5-(5-bromo-2-methoxybenzylidene)-3-(4-methylbenzyl)-1,3-thiazolidine-2,4-dione, Nuclear receptor coactivator 1, Peroxisome proliferator-activated receptor gamma
Authors:Rajagopalan, S, Webb, P, Baxter, J.D, Brennan, R.G, Phillips, K.J.
Deposit date:2011-07-19
Release date:2012-05-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:GQ-16, a novel peroxisome proliferator-activated receptor (PPAR gamma) ligand, promotes insulin sensitization without weight gain.
J.Biol.Chem., 287, 2012
8TN8
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BU of 8tn8 by Molmil
Crystal structure of the murine astrovirus capsid spike at 1.75 A
Descriptor: Capsid polyprotein VP90, POTASSIUM ION
Authors:Lanning, S, DuBois, R.M.
Deposit date:2023-08-01
Release date:2023-11-15
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure and immunogenicity of the murine astrovirus capsid spike.
J.Gen.Virol., 104, 2023
2GAB
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BU of 2gab by Molmil
Human Transthyretin (TTR) Complexed with Hydroxylated polychlorinated Biphenyl-4-hydroxy-3,3',5,4'-tetrachlorobiphenyl
Descriptor: 3,3',4',5-TETRACHLOROBIPHENYL-4-OL, Transthyretin
Authors:Palaninathan, S.K, Smith, C, Safe, S.H, Kelly, J.W, Sacchettini, J.C.
Deposit date:2006-03-08
Release date:2006-03-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Hydroxylated polychlorinated biphenyls selectively bind transthyretin in blood and inhibit amyloidogenesis: rationalizing rodent PCB toxicity
Chem.Biol., 11, 2004
2F8I
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BU of 2f8i by Molmil
Human transthyretin (TTR) complexed with Benzoxazole
Descriptor: 2-(2,6-DICHLOROPHENYL)-1,3-BENZOXAZOLE-6-CARBOXYLIC ACID, Transthyretin
Authors:Palaninathan, S.K, Mohamedmohaideen, N.N, Sacchettini, J.C, Kelly, J.W.
Deposit date:2005-12-02
Release date:2005-12-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.541 Å)
Cite:Benzoxazoles as transthyretin amyloid fibril inhibitors: synthesis, evaluation, and mechanism of action
Angew.Chem.Int.Ed.Engl., 42, 2003
7NPO
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BU of 7npo by Molmil
Branched K48-K63-Ub3
Descriptor: GLYCEROL, Polyubiquitin-B
Authors:Lange, S.M, Kwasna, D, Kulathu, Y.
Deposit date:2021-02-27
Release date:2022-08-10
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:VCP/p97-associated proteins are binders and debranching enzymes of K48-K63-branched ubiquitin chains.
Nat.Struct.Mol.Biol., 2024
6KQC
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BU of 6kqc by Molmil
Crystal structure of E136F mutant of Xanthine-guanine phosphoribosyltransferase from Yersinia pestis
Descriptor: CHLORIDE ION, GLYCEROL, Xanthine phosphoribosyltransferase
Authors:Lankipalli, S, Ramagopal, U.A.
Deposit date:2019-08-16
Release date:2019-09-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of E136F mutant of Xanthine-guanine phosphoribosyltransferase from Yersinia pestis
To be published
6KP5
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BU of 6kp5 by Molmil
crystal structure of Xanthine-guanine phosphoribosyltransferase (XGPRT) from Yersinia pestis in P21212 space group with sulphate ions in the active site
Descriptor: SULFATE ION, Xanthine phosphoribosyltransferase
Authors:Lankipalli, S, Ramagopal, U.A.
Deposit date:2019-08-14
Release date:2019-09-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:crystal structure of Xanthine-guanine phosphoribosyltransferase (XGPRT) from Yersinia pestis in P21212 space group
To be published
4V4M
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BU of 4v4m by Molmil
1.45 Angstrom Structure of STNV coat protein
Descriptor: CALCIUM ION, Coat protein
Authors:Lane, S.W, Dennis, C.A, Lane, C.L, Trinh, C.H, Rizkallah, P.J, Stockley, P.G, Phillips, S.E.V.
Deposit date:2011-04-28
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Construction and crystal structure of recombinant STNV capsids.
J.Mol.Biol., 413, 2011
5JGL
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BU of 5jgl by Molmil
Crystal structure of GtmA in complex with S-Adenosylmethionine
Descriptor: S-ADENOSYLMETHIONINE, SODIUM ION, UbiE/COQ5 family methyltransferase, ...
Authors:Dolan, S.K, Bock, T, Hering, V, Jones, G.W, Blankenfeldt, W, Doyle, S.
Deposit date:2016-04-20
Release date:2017-03-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural, mechanistic and functional insight into gliotoxinbis-thiomethylation inAspergillus fumigatus.
Open Biol, 7, 2017
5JGK
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Crystal structure of GtmA in complex with SAH
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, UbiE/COQ5 family methyltransferase, ...
Authors:Dolan, S.K, Bock, T, Hering, V, Jones, G.W, Blankenfeldt, W, Dolye, S.
Deposit date:2016-04-20
Release date:2017-03-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Structural, mechanistic and functional insight into gliotoxinbis-thiomethylation inAspergillus fumigatus.
Open Biol, 7, 2017
8S9L
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BU of 8s9l by Molmil
Structure of monomeric FAM111A SPD V347D Mutant
Descriptor: SULFATE ION, Serine protease FAM111A
Authors:Palani, S, Alvey, J.A, Cong, A.T.Q, Schellenberg, M.J, Machida, Y.
Deposit date:2023-03-29
Release date:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Dimerization-dependent serine protease activity of FAM111A prevents replication fork stalling at topoisomerase 1 cleavage complexes.
Nat Commun, 15, 2024
5JGJ
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BU of 5jgj by Molmil
Crystal structure of GtmA
Descriptor: UbiE/COQ5 family methyltransferase, putative
Authors:Dolan, S.K, Bock, T, Hering, V, Jones, G.W, Blankenfeldt, W, Doyle, S.
Deposit date:2016-04-20
Release date:2017-03-01
Last modified:2018-03-28
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structural, mechanistic and functional insight into gliotoxinbis-thiomethylation inAspergillus fumigatus.
Open Biol, 7, 2017
7TMW
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BU of 7tmw by Molmil
Cryo-EM structure of the relaxin receptor RXFP1 in complex with heterotrimeric Gs
Descriptor: Camelid antibody VHH fragment Nb35, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Erlandson, S.C, Rawson, S, Kruse, A.C.
Deposit date:2022-01-20
Release date:2023-02-15
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The relaxin receptor RXFP1 signals through a mechanism of autoinhibition.
Nat.Chem.Biol., 19, 2023
7RGG
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BU of 7rgg by Molmil
Room temperature serial crystal structure of Glutaminase C in complex with inhibitor BPTES
Descriptor: Glutaminase kidney isoform, mitochondrial 68 kDa chain, N,N'-[sulfanediylbis(ethane-2,1-diyl-1,3,4-thiadiazole-5,2-diyl)]bis(2-phenylacetamide)
Authors:Milano, S.K, Finke, A, Cerione, R.A.
Deposit date:2021-07-15
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:New insights into the molecular mechanisms of glutaminase C inhibitors in cancer cells using serial room temperature crystallography.
J.Biol.Chem., 298, 2022
7REN
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BU of 7ren by Molmil
Room temperature serial crystal structure of Glutaminase C in complex with inhibitor UPGL-00004
Descriptor: 2-phenyl-N-{5-[4-({5-[(phenylacetyl)amino]-1,3,4-thiadiazol-2-yl}amino)piperidin-1-yl]-1,3,4-thiadiazol-2-yl}acetamide, Glutaminase kidney isoform, mitochondrial
Authors:Milano, S.K, Finke, A, Cerione, R.A.
Deposit date:2021-07-13
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:New insights into the molecular mechanisms of glutaminase C inhibitors in cancer cells using serial room temperature crystallography.
J.Biol.Chem., 298, 2022
8S9K
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BU of 8s9k by Molmil
Structure of dimeric FAM111A SPD S541A Mutant
Descriptor: GLYCEROL, Serine protease FAM111A
Authors:Palani, S, Alvey, J.A, Cong, A.T.Q, Schellenberg, M.J, Machida, Y.
Deposit date:2023-03-29
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Dimerization-dependent serine protease activity of FAM111A prevents replication fork stalling at topoisomerase 1 cleavage complexes.
Nat Commun, 15, 2024
7NPI
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BU of 7npi by Molmil
Crystal structure of Mindy2 (C266A) in complex with Lys48-linked penta-ubiquitin (K48-Ub5)
Descriptor: CHLORIDE ION, Polyubiquitin-C, SODIUM ION, ...
Authors:Lange, S.M, Armstrong, L.A, Kulathu, Y.
Deposit date:2021-02-26
Release date:2021-09-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Mechanism of activation and regulation of deubiquitinase activity in MINDY1 and MINDY2.
Mol.Cell, 81, 2021
4QJY
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BU of 4qjy by Molmil
Crystal structure of native Ara127N, a GH127 beta-L-arabinofuranosidase from Geobacillus Stearothermophilus T6
Descriptor: ACETATE ION, GH127 beta-L-arabinofuranosidase
Authors:Lansky, S, Salama, R, Dann, R, Shner, I, Manjasetty, B, Belrhali, H, Shoham, Y, Shoham, G.
Deposit date:2014-06-05
Release date:2015-06-10
Method:X-RAY DIFFRACTION (2.294 Å)
Cite:Crystal structure of native Ara127N, a GH127 beta-L-arabinofuranosidase from Geobacillus Stearothermophilus T6
To be Published
5XTU
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BU of 5xtu by Molmil
Crystal Structure of GDSL Esterase of Photobacterium sp. J15
Descriptor: 1,2-ETHANEDIOL, CACODYLATE ION, CALCIUM ION, ...
Authors:Mazlan, S.N.H.S, Jonet, M.A, Leow, T.C, Ali, M.S.M, Rahman, R.N.Z.R.A.
Deposit date:2017-06-21
Release date:2018-10-10
Last modified:2018-10-17
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Crystallization and structure elucidation of GDSL esterase of Photobacterium sp. J15.
Int. J. Biol. Macromol., 119, 2018
8A67
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BU of 8a67 by Molmil
Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with matured synthetic nanobody NbSL3.3Q (3rd generation)
Descriptor: CHLORIDE ION, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Lange, S.M, Kulathu, Y.
Deposit date:2022-06-16
Release date:2023-02-15
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:VCP/p97-associated proteins are binders and debranching enzymes of K48-K63-branched ubiquitin chains.
Nat.Struct.Mol.Biol., 2024
5WKZ
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BU of 5wkz by Molmil
VH1-69 germline antibody predicted from CR6261
Descriptor: Immunoglobulin heavy variable 1-69D,IgG H chain, Lambda-chain (AA -20 to 215), SULFATE ION
Authors:Lang, S, Lee, P.S.
Deposit date:2017-07-25
Release date:2018-08-01
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Anti-idiotypic antibody K1-18 engages VH1-69 precursor and affinity-matured, anti-stem antibodies through mimicry of the HA stem
To Be Published
1L2W
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BU of 1l2w by Molmil
Crystal Structure of the Yersinia Virulence Effector YopE Chaperone-binding Domain in Complex with its Secretion Chaperone, SycE
Descriptor: Outer membrane virulence protein yopE, YopE regulator
Authors:Birtalan, S.C, Phillips, R.M, Ghosh, P.
Deposit date:2002-02-25
Release date:2002-06-12
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional secretion signals in chaperone-effector complexes of bacterial pathogens.
Mol.Cell, 9, 2002
1YDV
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BU of 1ydv by Molmil
TRIOSEPHOSPHATE ISOMERASE (TIM)
Descriptor: TRIOSEPHOSPHATE ISOMERASE
Authors:Velankar, S.S, Murthy, M.R.N.
Deposit date:1997-04-24
Release date:1997-10-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Triosephosphate isomerase from Plasmodium falciparum: the crystal structure provides insights into antimalarial drug design.
Structure, 5, 1997
4QK0
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BU of 4qk0 by Molmil
Crystal structure of Ara127N-Se, a GH127 beta-L-arabinofuranosidase from Geobacillus Stearothermophilus T6
Descriptor: GH127 beta-L-arabinofuranoside
Authors:Lansky, S, Salama, R, Dann, R, Shner, I, Manjasetty, B, Belrhali, H, Shoham, Y, Shoham, G.
Deposit date:2014-06-05
Release date:2015-06-10
Method:X-RAY DIFFRACTION (2.258 Å)
Cite:Crystal structure of Ara127N-Se, a GH127 beta-L-arabinofuranosidase from Geobacillus Stearothermophilus T6
To be Published
8GKA
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BU of 8gka by Molmil
Human TRPV3 tetramer structure, closed conformation
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, SODIUM ION, Transient receptor potential cation channel subfamily V member 3
Authors:Lansky, S, Betancourt, J.M, Scheuring, S.
Deposit date:2023-03-17
Release date:2023-09-06
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.55 Å)
Cite:A pentameric TRPV3 channel with a dilated pore.
Nature, 621, 2023

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