Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 2437 results

8TV5
DownloadVisualize
BU of 8tv5 by Molmil
Structure of the EphA2 LBDCRD bound to FabS1CE_L1 in a 2:1 (EphA2 to Fab) ratio
Descriptor: Ephrin type-A receptor 2, MAGNESIUM ION, S1CE variant of Fab_L1 heavy chain, ...
Authors:Singer, A.U, Bruce, H.A, Blazer, L, Adams, J.J, Sicheri, F, Sidhu, S.S.
Deposit date:2023-08-17
Release date:2024-09-11
Method:X-RAY DIFFRACTION (4.6 Å)
Cite:Synthetic Antibodies targeting EPHA2 Induce Diverse Signaling-Competent Clusters with Differential Activation
To be published
1T2C
DownloadVisualize
BU of 1t2c by Molmil
Plasmodium falciparum lactate dehydrogenase complexed with NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, GLYCEROL, L-lactate dehydrogenase
Authors:Cameron, A, Read, J, Tranter, R, Winter, V.J, Sessions, R.B, Brady, R.L, Vivas, L, Easton, A, Kendrick, H, Croft, S.L, Barros, D, Lavandera, J.L, Martin, J.J, Risco, F, Garcia-Ochoa, S, Gamo, F.J, Sanz, L, Leon, L, Ruiz, J.R, Gabarro, R, Mallo, A, De Las Heras, F.G.
Deposit date:2004-04-21
Release date:2004-05-11
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Identification and Activity of a Series of Azole-based Compounds with Lactate Dehydrogenase-directed Anti-malarial Activity.
J.Biol.Chem., 279, 2004
7RDV
DownloadVisualize
BU of 7rdv by Molmil
TFH TCR bound to MHC Class II IAd presenting aggrecan epitope
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Aggrecan core peptide, H-2 class II histocompatibility antigen, ...
Authors:Lim, J.J, Rossjohn, J, Reid, H.
Deposit date:2021-07-11
Release date:2022-07-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.90006614 Å)
Cite:TFH TCR bound to MHC Class II IAd presenting aggrecan epitope
To Be Published
1T69
DownloadVisualize
BU of 1t69 by Molmil
Crystal Structure of human HDAC8 complexed with SAHA
Descriptor: Histone deacetylase 8, OCTANEDIOIC ACID HYDROXYAMIDE PHENYLAMIDE, ZINC ION
Authors:Somoza, J.R, Skene, R.J, Katz, B.A, Mol, C, Ho, J.D, Jennings, A.J, Luong, C, Arvai, A, Buggy, J.J, Chi, E, Tang, J, Sang, B.-C, Verner, E, Wynands, R, Leahy, E.M, Dougan, D.R, Snell, G, Navre, M, Knuth, M.W, Swanson, R.V, McRee, D.E, Tari, L.W.
Deposit date:2004-05-05
Release date:2004-07-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Structural Snapshots of Human HDAC8 Provide Insights into the Class I Histone Deacetylases
Structure, 12, 2004
1STX
DownloadVisualize
BU of 1stx by Molmil
Structure of the K38A mutant of EcoRV bound to cognate DNA and Mn2+
Descriptor: 5'-D(*AP*AP*AP*GP*AP*T)-3', 5'-D(P*AP*TP*CP*TP*T)-3', MANGANESE (II) ION, ...
Authors:Horton, N.C, Perona, J.J.
Deposit date:2004-03-25
Release date:2004-04-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:DNA cleavage by EcoRV endonuclease: two metal ions in three metal ion binding sites
Biochemistry, 43, 2004
1T8J
DownloadVisualize
BU of 1t8j by Molmil
NMR Structure of BBA5, A Compact, Independently Folded BBA Motif
Descriptor: BBA5
Authors:Struthers, M.D, Ottesen, J.J, Imperiali, B.
Deposit date:2004-05-13
Release date:2004-05-25
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Design and NMR Analyses of Compact, Independently Folded BBA Motifs
Fold.Des., 3, 1998
6UXH
DownloadVisualize
BU of 6uxh by Molmil
Structure of serine hydroxymethyltransferase 8 from Glycine max cultivar Essex complexed with PLP
Descriptor: 1,2-ETHANEDIOL, Serine hydroxymethyltransferase
Authors:Korasick, D.A, Tanner, J.J, Beamer, L.J.
Deposit date:2019-11-07
Release date:2020-02-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.858 Å)
Cite:Impaired folate binding of serine hydroxymethyltransferase 8 from soybean underlies resistance to the soybean cyst nematode.
J.Biol.Chem., 295, 2020
6UYC
DownloadVisualize
BU of 6uyc by Molmil
Crystal structure of TEAD2 bound to Compound 2
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, N-{5-[(E)-2-(4,4-difluorocyclohexyl)ethenyl]-6-methoxypyridin-3-yl}methanesulfonamide, Transcriptional enhancer factor TEF-4
Authors:Noland, C.L, Holden, J.K, Crawford, J.J, Zbieg, J.R, Cunningham, C.N.
Deposit date:2019-11-12
Release date:2020-06-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.658 Å)
Cite:Small Molecule Dysregulation of TEAD Lipidation Induces a Dominant-Negative Inhibition of Hippo Pathway Signaling.
Cell Rep, 31, 2020
1TI8
DownloadVisualize
BU of 1ti8 by Molmil
H7 Haemagglutinin
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose, ...
Authors:Russell, R.J, Gamblin, S.J, Haire, L.F, Stevens, D.J, Xaio, B, Ha, Y, Skehel, J.J.
Deposit date:2004-06-02
Release date:2005-06-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:H1 and H7 influenza haemagglutinin structures extend a structural classification of haemagglutinin subtypes.
Virology, 325, 2004
6UXJ
DownloadVisualize
BU of 6uxj by Molmil
Structure of serine hydroxymethyltransferase 8 from Glycine max cultivar Essex complexed with PLP-glycine and 5-formyltetrahydrofolate
Descriptor: 1,2-ETHANEDIOL, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE], N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid, ...
Authors:Korasick, D.A, Tanner, J.J, Beamer, L.J.
Deposit date:2019-11-07
Release date:2020-02-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Impaired folate binding of serine hydroxymethyltransferase 8 from soybean underlies resistance to the soybean cyst nematode.
J.Biol.Chem., 295, 2020
1T67
DownloadVisualize
BU of 1t67 by Molmil
Crystal Structure of Human HDAC8 complexed with MS-344
Descriptor: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide, Histone deacetylase 8, SODIUM ION, ...
Authors:Somoza, J.R, Skene, R.J, Katz, B.A, Mol, C, Ho, J.D, Jennings, A.J, Luong, C, Arvai, A, Buggy, J.J, Chi, E, Tang, J, Sang, B.-C, Verner, E, Wynands, R, Leahy, E.M, Dougan, D.R, Snell, G, Navre, M, Knuth, M.W, Swanson, R.V, McRee, D.E, Tari, L.W.
Deposit date:2004-05-05
Release date:2004-07-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structural Snapshots of Human HDAC8 Provide Insights into the Class I Histone Deacetylases
Structure, 12, 2004
1T7D
DownloadVisualize
BU of 1t7d by Molmil
Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Descriptor: 10-METHYLUNDECANOIC ACID, ARYLOMYCIN A2, SIGNAL PEPTIDASE I
Authors:Paetzel, M, Goodall, J.J, Kania, M, Dalbey, R.E, Page, M.G.P.
Deposit date:2004-05-09
Release date:2004-07-13
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Crystallographic and Biophysical Analysis of a Bacterial Signal Peptidase in Complex with a Lipopeptide Based Inhibitor.
J.Biol.Chem., 279, 2004
6V13
DownloadVisualize
BU of 6v13 by Molmil
immune receptor complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fibrinogen beta 74cit69-81, G08 TCR alpha chain, ...
Authors:Lim, J.J, Rossjohn, J.
Deposit date:2019-11-19
Release date:2020-11-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The shared susceptibility epitope of HLA-DR4 binds citrullinated self-antigens and the TCR.
Sci Immunol, 6, 2021
5MJV
DownloadVisualize
BU of 5mjv by Molmil
Rebuild and re-refined model for Human Parechovirus 1
Descriptor: CAPSID SUBUNIT VP0, CAPSID SUBUNIT VP1, CAPSID SUBUNIT VP3, ...
Authors:Shakeel, S, Dykeman, E.C, White, S.J, Ora, A, Cockburn, J.J.B, Butcher, S.J, Stockley, P.G, Twarock, R.
Deposit date:2016-12-01
Release date:2017-01-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Genomic RNA folding mediates assembly of human parechovirus.
Nat Commun, 8, 2017
1T2D
DownloadVisualize
BU of 1t2d by Molmil
Plasmodium falciparum lactate dehydrogenase complexed with NAD+ and oxalate
Descriptor: GLYCEROL, L-lactate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Cameron, A, Read, J, Tranter, R, Winter, V.J, Sessions, R.B, Brady, R.L, Vivas, L, Easton, A, Kendrick, H, Croft, S.L, Barros, D, Lavandera, J.L, Martin, J.J, Risco, F, Garcia-Ochoa, S, Gamo, F.J, Sanz, L, Leon, L, Ruiz, J.R, Gabarro, R, Mallo, A, De Las Heras, F.G.
Deposit date:2004-04-21
Release date:2004-05-11
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Identification and Activity of a Series of Azole-based Compounds with Lactate Dehydrogenase-directed Anti-malarial Activity.
J.Biol.Chem., 279, 2004
1T2E
DownloadVisualize
BU of 1t2e by Molmil
Plasmodium falciparum lactate dehydrogenase S245A, A327P mutant complexed with NADH and oxamate
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, GLYCEROL, L-lactate dehydrogenase, ...
Authors:Cameron, A, Read, J, Tranter, R, Winter, V.J, Sessions, R.B, Brady, R.L, Vivas, L, Easton, A, Kendrick, H, Croft, S.L, Barros, D, Lavandera, J.L, Martin, J.J, Risco, F, Garcia-Ochoa, S, Gamo, F.J, Sanz, L, Leon, L, Ruiz, J.R, Gabarro, R, Mallo, A, De Las Heras, F.G.
Deposit date:2004-04-21
Release date:2004-05-11
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Identification and Activity of a Series of Azole-based Compounds with Lactate Dehydrogenase-directed Anti-malarial Activity.
J.Biol.Chem., 279, 2004
8S99
DownloadVisualize
BU of 8s99 by Molmil
Crystal structure of the TYK2 pseudokinase domain in complex with compound 11
Descriptor: (8S)-N-[(1R,2S)-2-fluorocyclopropyl]-5-{[(1M,2'M)-3'-fluoro-2-oxo-2H-[1,2'-bipyridin]-3-yl]amino}-7-(methylamino)pyrazolo[1,5-a]pyrimidine-3-carboxamide, 1,2-ETHANEDIOL, ACETATE ION, ...
Authors:Toms, A.V, Leit, S, Greenwood, J.R, Carriero, S, Mondal, S, Abel, R, Ashwell, M, Blanchette, H, Boyles, N, Cartwright, M, Collis, A, Feng, S, Ghanakota, P, Harriman, G.C, Hosagrahara, V, Kaila, N, Kapeller, R, Rafi, S, Romero, D.L, Tarantino, P, Timaniya, J, Wester, R.T, Westlin, W, Srivastava, B, Miao, W, Tummino, P, McElwee, J.J, Edmondson, S.D, Massee, C.E.
Deposit date:2023-03-27
Release date:2023-07-26
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Discovery of a Potent and Selective Tyrosine Kinase 2 Inhibitor: TAK-279.
J.Med.Chem., 66, 2023
2QUG
DownloadVisualize
BU of 2qug by Molmil
Crystal structure of alpha-1-antitrypsin, crystal form A
Descriptor: Alpha-1-antitrypsin
Authors:Hansen, G, Morton, C.J, Pearce, M.C, Feil, S.C, Adams, J.J, Parker, M.W, Bottomley, S.P.
Deposit date:2007-08-05
Release date:2008-08-12
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Preventing serpin aggregation: The molecular mechanism of citrate action upon antitrypsin unfolding.
Protein Sci., 17, 2008
8S9A
DownloadVisualize
BU of 8s9a by Molmil
Crystal structure of the TYK2 pseudokinase domain in complex with TAK-279
Descriptor: (8S)-N-[(1R,2R)-2-methoxycyclobutyl]-7-(methylamino)-5-{[(1P,2'P)-2-oxo-2H-[1,2'-bipyridin]-3-yl]amino}pyrazolo[1,5-a]pyrimidine-3-carboxamide, 1,2-ETHANEDIOL, ACETATE ION, ...
Authors:Toms, A.V, Leit, S, Greenwood, J.R, Carriero, S, Mondal, S, Abel, R, Ashwell, M, Blanchette, H, Boyles, N, Cartwright, M, Collis, A, Feng, S, Ghanakota, P, Harriman, G.C, Hosagrahara, V, Kaila, N, Kapeller, R, Rafi, S, Romero, D.L, Tarantino, P, Timaniya, J, Wester, R.T, Westlin, W, Srivastava, B, Miao, W, Tummino, P, McElwee, J.J, Edmondson, S.D, Massee, C.E.
Deposit date:2023-03-27
Release date:2023-07-26
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Discovery of a Potent and Selective Tyrosine Kinase 2 Inhibitor: TAK-279.
J.Med.Chem., 66, 2023
8S98
DownloadVisualize
BU of 8s98 by Molmil
Crystal structure of the TYK2 pseudokinase domain in complex with compound 8
Descriptor: (8S)-N-cyclopropyl-5-[(2-methoxypyridin-3-yl)amino]-7-(methylamino)pyrazolo[1,5-a]pyrimidine-3-carboxamide, Non-receptor tyrosine-protein kinase TYK2
Authors:Toms, A.V, Leit, S, Greenwood, J.R, Carriero, S, Mondal, S, Abel, R, Ashwell, M, Blanchette, H, Boyles, N, Cartwright, M, Collis, A, Feng, S, Ghanakota, P, Harriman, G.C, Hosagrahara, V, Kaila, N, Kapeller, R, Rafi, S, Romero, D.L, Tarantino, P, Timaniya, J, Wester, R.T, Westlin, W, Srivastava, B, Miao, W, Tummino, P, McElwee, J.J, Edmondson, S.D, Massee, C.E.
Deposit date:2023-03-27
Release date:2023-07-26
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Discovery of a Potent and Selective Tyrosine Kinase 2 Inhibitor: TAK-279.
J.Med.Chem., 66, 2023
6V0Y
DownloadVisualize
BU of 6v0y by Molmil
immune receptor complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fibrinogen beta 72,74cit69-81, GLYCEROL, ...
Authors:Lim, J.J, Rossjohn, J.
Deposit date:2019-11-19
Release date:2020-11-25
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The shared susceptibility epitope of HLA-DR4 binds citrullinated self-antigens and the TCR.
Sci Immunol, 6, 2021
6V15
DownloadVisualize
BU of 6v15 by Molmil
immune receptor complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fibrinogen beta 72,74cit69-81, G08 TCR alpha chain, ...
Authors:Lim, J.J, Rossjohn, J.
Deposit date:2019-11-19
Release date:2020-11-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The shared susceptibility epitope of HLA-DR4 binds citrullinated self-antigens and the TCR.
Sci Immunol, 6, 2021
8ERK
DownloadVisualize
BU of 8erk by Molmil
Acheta domesticus segmented densovirus, high buoyancy (HB) capsid, a mixed population of empty and immature full particles
Descriptor: Acheta domesticus segmented densovirus major capsid protein
Authors:Penzes, J.J, McKenna, R, Tijssen, P.
Deposit date:2022-10-12
Release date:2022-11-09
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Bipartite genome and structural organization of the parvovirus Acheta domesticus segmented densovirus.
Nat Commun, 14, 2023
8EU6
DownloadVisualize
BU of 8eu6 by Molmil
Acheta domesticus segmented densovirus high buoyancy fraction 1 (HB1) empty capsid structure
Descriptor: Capsid protein
Authors:Penzes, J.J, McKenna, R, Tijssen, P.
Deposit date:2022-10-18
Release date:2022-11-09
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Bipartite genome and structural organization of the parvovirus Acheta domesticus segmented densovirus.
Nat Commun, 14, 2023
8ER8
DownloadVisualize
BU of 8er8 by Molmil
Acheta domesticus segmented densovirus, mature virion capsid structure
Descriptor: Acheta domesticus segmented densovirus major capsid protein, DNA (5'-D(P*AP*AP*TP*AP*A)-3')
Authors:Penzes, J.J, McKenna, R, Tijssen, P.
Deposit date:2022-10-11
Release date:2022-11-09
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Bipartite genome and structural organization of the parvovirus Acheta domesticus segmented densovirus.
Nat Commun, 14, 2023

226707

数据于2024-10-30公开中

PDB statisticsPDBj update infoContact PDBjnumon