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PDB: 6628 results

7QG6
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BU of 7qg6 by Molmil
Co-crystal structure of UPF3A-RRM-NOPS-L with UPF2-MIF4GIII
Descriptor: CHLORIDE ION, Regulator of nonsense transcripts 2, Regulator of nonsense transcripts 3A, ...
Authors:Powers, K.T, Bufton, J.C, Szeto, J.A, Schaffitzel, C.
Deposit date:2021-12-07
Release date:2022-07-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structures of nonsense-mediated mRNA decay factors UPF3B and UPF3A in complex with UPF2 reveal molecular basis for competitive binding and for neurodevelopmental disorder-causing mutation.
Nucleic Acids Res., 50, 2022
6TWW
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BU of 6tww by Molmil
Variant W229D/F290W-19 of the last common ancestor of Gram-negative bacteria beta-lactamase class A (GNCA4)
Descriptor: ACETATE ION, Beta-Lactamase (GNCA4), FORMIC ACID, ...
Authors:Gavira, J.A, Risso, V, Sanchez-Ruiz, J.M, Romero-Rivera, A, Kamerlin, S.C.L.
Deposit date:2020-01-13
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Enhancing ade novoenzyme activity by computationally-focused ultra-low-throughput screening.
Chem Sci, 11, 2020
6U8K
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BU of 6u8k by Molmil
Crystal structure of hepatitis C virus IRES junction IIIabc in complex with Fab HCV3
Descriptor: Heavy chain of Fab HCV3, JIIIabc RNA (68-MER), Light chain of Fab HCV3
Authors:Koirala, D, Lewicka, A, Koldobskaya, Y, Huang, H, Piccirilli, J.A.
Deposit date:2019-09-05
Release date:2019-12-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Synthetic Antibody Binding to a Preorganized RNA Domain of Hepatitis C Virus Internal Ribosome Entry Site Inhibits Translation.
Acs Chem.Biol., 15, 2020
6U63
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BU of 6u63 by Molmil
Mcl-1 bound to compound 17
Descriptor: 2-{[(naphthalen-2-yl)sulfonyl]amino}-5-[(2-phenylethyl)sulfanyl]benzoic acid, Induced myeloid leukemia cell differentiation protein Mcl-1
Authors:Stuckey, J.A.
Deposit date:2019-08-29
Release date:2020-03-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Discovery and Characterization of 2,5-Substituted Benzoic Acid Dual Inhibitors of the Anti-apoptotic Mcl-1 and Bfl-1 Proteins.
J.Med.Chem., 63, 2020
6U9K
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BU of 6u9k by Molmil
MLL1 SET N3861I/Q3867L bound to inhibitor 18 (TC-5153)
Descriptor: 5'-([(3S)-3-amino-3-carboxypropyl]{[1-(3,3-diphenylpropyl)azetidin-3-yl]methyl}amino)-5'-deoxyadenosine, GLYCEROL, Histone-lysine N-methyltransferase, ...
Authors:Petrunak, E.M, Stuckey, J.A.
Deposit date:2019-09-09
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of Potent Small-Molecule Inhibitors of MLL Methyltransferase.
Acs Med.Chem.Lett., 11, 2020
7Q9X
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BU of 7q9x by Molmil
Crystal structure of Chromobacterium violaceum aminotransferase in complex with PLP-pyruvate adduct
Descriptor: (3E)-4-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}-2-oxobut-3-enoic acid, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Isupov, M.N, Mitchell, D, Sayer, C, Littlechild, J.A.
Deposit date:2021-11-15
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Aminotransferase from Chromobacterium violaceum in complex with PLP-pyruvate adduct.
To Be Published
6TXD
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BU of 6txd by Molmil
Variant W229D/F290W-12 of the last common ancestor of Gram-negative bacteria beta-lactamase class A (GNCA4)
Descriptor: ACETATE ION, Beta lactamase (GNCA4-12), FORMIC ACID, ...
Authors:Gavira, J.A, Risso, V, Sanchez-Ruiz, J.M, Romero-Rivera, A, Kamerlin, S.C.L.
Deposit date:2020-01-14
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Enhancing ade novoenzyme activity by computationally-focused ultra-low-throughput screening.
Chem Sci, 11, 2020
7Q9Z
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BU of 7q9z by Molmil
Crystal structure of Chromobacterium violaceum aminotransferase in complex with PLP-pyruvate adduct
Descriptor: (3E)-4-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}-2-oxobut-3-enoic acid, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Isupov, M.N, Mitchell, D, Sayer, C, Littlechild, J.A.
Deposit date:2021-11-15
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Aminotransferase from Chromobacterium violaceum in complex with PLP-pyruvate adduct.
To Be Published
6U6F
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BU of 6u6f by Molmil
The crystal structure of anti-apoptotic Mcl-1 protein in complex with 2, 5-substituted benzoic acid inhibitor 21
Descriptor: 2-[({4-[(4-tert-butylphenyl)methyl]piperazin-1-yl}sulfonyl)amino]-5-[(2-phenylethyl)sulfanyl]benzoic acid, Induced myeloid leukemia cell differentiation protein Mcl-1
Authors:Yang, Y, Stuckey, J.A, Nikolovska-Coleska, Z.
Deposit date:2019-08-29
Release date:2020-03-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Discovery and Characterization of 2,5-Substituted Benzoic Acid Dual Inhibitors of the Anti-apoptotic Mcl-1 and Bfl-1 Proteins.
J.Med.Chem., 63, 2020
7QEJ
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BU of 7qej by Molmil
Structure of the ligand binding domain of the antibiotic biosynthesis regulator AdmX from the rhizobacterium Serratia plymuthica A153 bound to the auxin indole-3-acetic acid (IAA).
Descriptor: 1H-INDOL-3-YLACETIC ACID, MAGNESIUM ION, TRANSCRIPTIONAL REGULATOR AdmX
Authors:Gavira, J.A, Rico-Jimenez, M, Castellvi, A, Krell, T, Matilla, M.A.
Deposit date:2021-12-03
Release date:2022-12-14
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Emergence of an Auxin Sensing Domain in Plant-Associated Bacteria.
Mbio, 14, 2023
7QEK
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BU of 7qek by Molmil
Structure of the ligand binding domain of the antibiotic biosynthesis regulator AdmX from the rhizobacterium Serratia plymuthica A153 bound to the auxin indole-3-piruvic acid (IPA).
Descriptor: 3-(1H-INDOL-3-YL)-2-OXOPROPANOIC ACID, MAGNESIUM ION, regulator AdmX
Authors:Gavira, J.A, Rico-Jimenez, M, Castellvi, A, Krell, T, Matilla, M.A.
Deposit date:2021-12-03
Release date:2022-12-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Emergence of an Auxin Sensing Domain in Plant-Associated Bacteria.
Mbio, 14, 2023
7QTR
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BU of 7qtr by Molmil
GB1 in mammalian cells, 50 uM
Descriptor: Immunoglobulin G-binding protein G
Authors:Gerez, J.A, Prymaczok, N.C, Kadavath, H, Gosh, D, Butikofer, M, Guntert, P, Riek, R.
Deposit date:2022-01-15
Release date:2022-12-21
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Protein structure determination in human cells by in-cell NMR and a reporter system to optimize protein delivery or transexpression.
Commun Biol, 5, 2022
7QTS
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BU of 7qts by Molmil
GB1 in mammalian cells, 10 uM
Descriptor: Immunoglobulin G-binding protein G
Authors:Gerez, J.A, Prymaczok, N.C, Kadavath, H, Gosh, D, Butikofer, M, Guntert, P, Riek, R.
Deposit date:2022-01-15
Release date:2022-12-21
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Protein structure determination in human cells by in-cell NMR and a reporter system to optimize protein delivery or transexpression.
Commun Biol, 5, 2022
6UEB
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BU of 6ueb by Molmil
Structure of Rabies SAD-B19 L-P complex from cryo-EM
Descriptor: Large structural protein, Phosphoprotein,Phosphoprotein, ZINC ION
Authors:Horwitz, J.A, Harrison, S.C.
Deposit date:2019-09-20
Release date:2020-02-05
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of a rabies virus polymerase complex from electron cryo-microscopy.
Proc.Natl.Acad.Sci.USA, 117, 2020
7QSJ
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BU of 7qsj by Molmil
Methylmannose polysaccharide hydrolase MmpH from M. hassiacum
Descriptor: GLYCEROL, MAGNESIUM ION, Methylmannose polysaccharide hydrolase (MmpH), ...
Authors:Ripoll-Rozada, J, Manso, J.A, Pereira, P.J.B.
Deposit date:2022-01-13
Release date:2023-01-25
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Self-recycling and partially conservative replication of mycobacterial methylmannose polysaccharides.
Commun Biol, 6, 2023
7QON
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BU of 7qon by Molmil
Monoclinic triose phosphate isomerase from Fasciola hepatica.
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SODIUM ION, ...
Authors:Kontellas, G, Isupov, M.N, Littlechild, J.A.
Deposit date:2021-12-24
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Monoclinic triose phosphate isomerase from Fasciola hepatica.
To Be Published
7QSG
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BU of 7qsg by Molmil
Methylmannose polysaccharide mannosyltransferase from M. hassiacum
Descriptor: D-inositol 3-phosphate glycosyltransferase
Authors:Manso, J.A, Ripoll-Rozada, J, Pereira, P.J.B.
Deposit date:2022-01-13
Release date:2023-01-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Self-recycling and partially conservative replication of mycobacterial methylmannose polysaccharides.
Commun Biol, 6, 2023
7QVW
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BU of 7qvw by Molmil
R396W mutant of the vanadium-dependent bromoperoxidase from Corallina pilulifera
Descriptor: CALCIUM ION, GLYCEROL, PHOSPHATE ION, ...
Authors:Isupov, M.N, Mitchell, D, Littelchild, J.A, Garcia-Rodriguez, E.
Deposit date:2022-01-23
Release date:2023-02-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.922 Å)
Cite:R396W mutant of the vanadium-dependent bromoperoxidase from Corallina pilulifera
To Be Published
7QW3
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BU of 7qw3 by Molmil
R396W mutant of the vanadium-dependent bromoperoxidase from Corallina pilulifera in complex with Br ion.
Descriptor: BROMIDE ION, CALCIUM ION, GLYCEROL, ...
Authors:Isupov, M.N, Mitchell, D, Littelchild, J.A, Garcia-Rodriguez, E.
Deposit date:2022-01-24
Release date:2023-02-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:R396W mutant of the vanadium-dependent bromoperoxidase from Corallina pilulifera
To Be Published
7QWI
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BU of 7qwi by Molmil
Vanadate complex of the vanadium-dependent bromoperoxidase from Corallina pilulifera
Descriptor: 1,2-ETHANEDIOL, BROMIDE ION, CALCIUM ION, ...
Authors:Isupov, M.N, Mitchell, D, Littelchild, J.A, Garcia-Rodriguez, E.
Deposit date:2022-01-25
Release date:2023-02-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:R396W mutant of the vanadium-dependent bromoperoxidase from Corallina pilulifera
To Be Published
7QYY
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BU of 7qyy by Molmil
Vanadium-dependent bromoperoxidase from Corallina pilulifera in complex with chloride
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Isupov, M.N, Mitchell, D, Littelchild, J.A, Garcia-Rodriguez, E.
Deposit date:2022-01-29
Release date:2023-02-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:R396W mutant of the vanadium-dependent bromoperoxidase from Corallina pilulifera
To Be Published
6U9N
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BU of 6u9n by Molmil
MLL1 SET N3861I/Q3867L bound to inhibitor 14 (TC-5139)
Descriptor: 5'-{[(3S)-3-amino-3-carboxypropyl]({1-[(4-chlorophenyl)methyl]azetidin-3-yl}methyl)amino}-5'-deoxyadenosine, Histone-lysine N-methyltransferase, ZINC ION
Authors:Petrunak, E.M, Stuckey, J.A.
Deposit date:2019-09-09
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Discovery of Potent Small-Molecule Inhibitors of MLL Methyltransferase.
Acs Med.Chem.Lett., 11, 2020
7QRL
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BU of 7qrl by Molmil
LytM domain of DipM, a coordinator of a complex net of autolysins in Caulobacter crescentus
Descriptor: DipM
Authors:Batuecas, M.T, Miguel-Ruano, V, Hermoso, J.A.
Deposit date:2022-01-11
Release date:2023-06-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:LytM domain of DipM, a coordinator of a complex net of autolysins in Caulobacter crescentus
Nat Commun, 2023
6O9S
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BU of 6o9s by Molmil
Crystal structure of Staphylococcus aureus MecR1 antibiotic-sensor domain in complex with avibactam
Descriptor: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, Methicillin resistance mecR1 protein, SULFATE ION
Authors:Alexander, J.A.N, Strynadka, N.C.J.
Deposit date:2019-03-14
Release date:2020-06-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structural analysis of avibactam-mediated activation of the bla and mec divergons in methicillin-resistant Staphylococcus aureus .
J.Biol.Chem., 295, 2020
6O9W
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BU of 6o9w by Molmil
Crystal structure of Staphylococcus aureus BlaR1 antibiotic-sensor domain in complex with avibactam
Descriptor: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, Regulatory protein BlaR1
Authors:Alexander, J.A.N, Strynadka, N.C.J.
Deposit date:2019-03-15
Release date:2020-06-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural analysis of avibactam-mediated activation of the bla and mec divergons in methicillin-resistant Staphylococcus aureus .
J.Biol.Chem., 295, 2020

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