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PDB: 42880 results

1N5A
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Crystal structure of the Murine class I Major Histocompatibility Complex of H-2DB, B2-Microglobulin, and A 9-Residue immunodominant peptide epitope gp33 derived from LCMV
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, D-B alpha chain, ...
Authors:Achour, A, Michaelsson, J, Harris, R.A, Odeberg, J, Grufman, P, Sandberg, J.K, Levitsky, V, Karre, K, Sandalova, T, Schneider, G.
Deposit date:2002-11-05
Release date:2003-01-07
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:A Structural Basis for LCMV Immune Evasion. Subversion of H-2D(b) and H-2K(b) Presentation of gp33 Revealed by Comparative Crystal Structure Analyses.
Immunity, 17, 2002
1RSN
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RIBONUCLEASE (RNASE SA) (E.C.3.1.4.8) COMPLEXED WITH EXO-2',3'-CYCLOPHOSPHOROTHIOATE
Descriptor: GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE, RIBONUCLEASE SA, SULFATE ION
Authors:Sevcik, J, Dauter, Z, Lamzin, V.S, Wilson, K.S.
Deposit date:1995-09-01
Release date:1995-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Complex of ribonuclease Sa with a cyclic nucleotide and a proposed model for the reaction intermediate.
Eur.J.Biochem., 216, 1993
7ZAY
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BU of 7zay by Molmil
Human heparan sulfate polymerase complex EXT1-EXT2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Exostosin-1, Exostosin-2, ...
Authors:Leisico, F, Omeiri, J, Hons, M, Schoehn, G, Lortat-Jacob, H, Wild, R.
Deposit date:2022-03-23
Release date:2022-12-07
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of the human heparan sulfate polymerase complex EXT1-EXT2.
Nat Commun, 13, 2022
2PKU
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Solution structure of PICK1 PDZ in complex with the carboxyl tail peptide of GluR2
Descriptor: PRKCA-binding protein, peptide (GLU)(SER)(VAL)(LYS)(ILE)
Authors:Pan, L, Wu, H, Shen, C, Shi, Y, Xia, J, Zhang, M.
Deposit date:2007-04-18
Release date:2007-11-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Clustering and synaptic targeting of PICK1 requires direct interaction between the PDZ domain and lipid membranes
Embo J., 26, 2007
5XJ3
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BU of 5xj3 by Molmil
Complex structure of ipilimumab-scFv and CTLA-4
Descriptor: Cytotoxic T-lymphocyte protein 4, ipilimumab-VH, ipilimumab-VL
Authors:He, M, Chai, Y, Qi, J, Tong, Z, Tan, S, Gao, G.F.
Deposit date:2017-04-29
Release date:2018-04-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Remarkably similar CTLA-4 binding properties of therapeutic ipilimumab and tremelimumab antibodies
Oncotarget, 8, 2017
3RRS
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BU of 3rrs by Molmil
Crystal structure analysis of cellobiose phosphorylase from Cellulomonas uda
Descriptor: Cellobiose phosphorylase
Authors:Van Hoorebeke, A, Stout, J, Soetaert, W, Van Beeumen, J, Desmet, T, Savvides, S.
Deposit date:2011-04-30
Release date:2012-05-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Cellobiose phosphorylase: reconstructing the structural itinerary along the catalytic pathway
To be Published
2JOH
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BU of 2joh by Molmil
NMR structure of rabbit prion protein mutation S173N
Descriptor: Major prion protein
Authors:Li, J, Lin, D.
Deposit date:2007-03-13
Release date:2008-02-19
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Unique structural characteristics of the rabbit prion protein.
J.Biol.Chem., 285, 2010
5X7J
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BU of 5x7j by Molmil
Crystal structure of thymidylate kinase from thermus thermophilus HB8
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Chaudhary, S.K, Jeyakanthan, J, Sekar, K.
Deposit date:2017-02-27
Release date:2018-03-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Insights into product release dynamics through structural analyses of thymidylate kinase.
Int. J. Biol. Macromol., 123, 2019
1G29
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MALK
Descriptor: 1,4-DIETHYLENE DIOXIDE, AMMONIUM ION, CHLORIDE ION, ...
Authors:Diederichs, K, Diez, J, Greller, G, Mueller, C, Breed, J, Schnell, C, Vonrhein, C, Boos, W, Welte, W.
Deposit date:2000-10-18
Release date:2000-12-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of MalK, the ATPase subunit of the trehalose/maltose ABC transporter of the archaeon Thermococcus litoralis.
EMBO J., 19, 2000
5XNF
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BU of 5xnf by Molmil
Crystal structure of the branched-chain polyamine synthase (BpsA) from Thermococcus kodakarensis
Descriptor: FE (III) ION, GLYCEROL, N(4)-bis(aminopropyl)spermidine synthase, ...
Authors:Mizohata, E, Tse, K.M, Fujita, J, Inoue, T.
Deposit date:2017-05-22
Release date:2018-08-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine.
FEBS J., 284, 2017
5XB5
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Crystal structure of R90A mutant of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5
Descriptor: PHOSPHATE ION, Thymidylate kinase
Authors:Biswas, A, Jeyakanthan, J, Sekar, K.
Deposit date:2017-03-15
Release date:2017-06-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structural studies of a hyperthermophilic thymidylate kinase enzyme reveal conformational substates along the reaction coordinate.
FEBS J., 284, 2017
7YOJ
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Structure of CasPi with guide RNA and target DNA
Descriptor: CasPi, DNA (30-MER), DNA (5'-D(P*CP*GP*GP*GP*AP*TP*GP*CP*CP*CP*AP*G)-3'), ...
Authors:Li, C.P, Wang, J, Liu, J.J.
Deposit date:2022-08-01
Release date:2023-02-15
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:The compact Cas pi (Cas12l) 'bracelet' provides a unique structural platform for DNA manipulation.
Cell Res., 33, 2023
3SC7
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BU of 3sc7 by Molmil
First crystal structure of an endo-inulinase, from Aspergillus ficuum: structural analysis and comparison with other GH32 enzymes.
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Inulinase, alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose, ...
Authors:Housen, I, Pouyez, J, Roussel, G, Mayard, A, Vandamme, A.M, Wouters, J, Michaux, C.
Deposit date:2011-06-07
Release date:2012-06-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:First crystal structure of an endo-inulinase, INU2, from Aspergillus ficuum: Discovery of an extra-pocket in the catalytic domain responsible for its endo-activity.
Biochimie, 94, 2012
2APN
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hi1723 solution structure
Descriptor: Protein HI1723
Authors:He, Y, Yeh, D.C, Orban, J, Structure 2 Function Project (S2F)
Deposit date:2005-08-16
Release date:2006-10-03
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution NMR Structure of HI1723 From Haemophilus Influenzae
To be Published
5ZAZ
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BU of 5zaz by Molmil
Solution structure of integrin b2 monomer tranmembrane domain in bicelle
Descriptor: Integrin beta-2
Authors:Li, H, Guo, J, Xu, C.
Deposit date:2018-02-09
Release date:2018-10-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Intramembrane ionic protein-lipid interaction regulates integrin structure and function.
PLoS Biol., 16, 2018
5ZB0
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BU of 5zb0 by Molmil
Crystal structure of thymidylate kinase in complex with ADP and TDP from thermus thermophilus HB8
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Chaudhary, S.K, Jeyakanthan, J, Sekar, K.
Deposit date:2018-02-09
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Insights into product release dynamics through structural analyses of thymidylate kinase.
Int. J. Biol. Macromol., 123, 2018
3SJI
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BU of 3sji by Molmil
crystal structure of CVA16 3C in complex with Rupintrivir (AG7088)
Descriptor: 3C protease, 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER, SODIUM ION
Authors:Lu, G, Qi, J, Chen, Z, Xu, X, Gao, F, Lin, D, Qian, W, Liu, H, Jiang, H, Yan, J, Gao, G.F.
Deposit date:2011-06-21
Release date:2011-08-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.798 Å)
Cite:Enterovirus 71 and Coxsackievirus A16 3C Proteases: Binding to Rupintrivir and Their Substrates and Anti-Hand, Foot, and Mouth Disease Virus Drug Design.
J.Virol., 85, 2011
2JII
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BU of 2jii by Molmil
Structure of vaccinia related kinase 3
Descriptor: 1,2-ETHANEDIOL, SERINE/THREONINE-PROTEIN KINASE VRK3 MOLECULE: VACCINIA RELATED KINASE 3
Authors:Bunkoczi, G, Eswaran, J, Pike, A.C.W, Uppenberg, J, Ugochukwu, E, von Delft, F, Cooper, C, Salah, E, Savitsky, P, Burgess-Brown, N, Keates, T, Fedorov, O, Sobott, F, Arrowsmith, C.H, Edwards, A, Sundstrom, M, Weigelt, J, Knapp, S.
Deposit date:2007-06-28
Release date:2007-07-10
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the pseudokinase VRK3 reveals a degraded catalytic site, a highly conserved kinase fold, and a putative regulatory binding site.
Structure, 17, 2009
3SJN
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Crystal structure of enolase Spea_3858 (target EFI-500646) from Shewanella pealeana with magnesium bound
Descriptor: GLYCEROL, MAGNESIUM ION, Mandelate racemase/muconate lactonizing protein, ...
Authors:Patskovsky, Y, Kim, J, Toro, R, Bhosle, R, Hillerich, B, Seidel, R.D, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Zencheck, W.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2011-06-21
Release date:2011-07-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Enolase Spea_3858 from Shewanella Pealeana
To be Published
3SMQ
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BU of 3smq by Molmil
Crystal structure of protein arginine methyltransferase 3
Descriptor: 1-(1,2,3-benzothiadiazol-6-yl)-3-[2-(cyclohex-1-en-1-yl)ethyl]urea, CHLORIDE ION, Protein arginine N-methyltransferase 3, ...
Authors:Dobrovetsky, E, Dong, A, Walker, J.R, Siarheyeva, A, Senisterra, G, Wasney, G.A, Smil, D, Bolshan, Y, Nguyen, K.T, Allali-Hassani, A, Hajian, T, Poda, G, Bountra, C, Weigelt, J, Edwards, A.M, Al-Awar, R, Brown, P.J, Schapira, M, Arrowsmith, C.H, Vedadi, M, Structural Genomics Consortium (SGC)
Deposit date:2011-06-28
Release date:2011-08-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:An allosteric inhibitor of protein arginine methyltransferase 3.
Structure, 20, 2012
7YON
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BU of 7yon by Molmil
Complex structure of Neuropeptide Y Y2 receptor in complex with PYY(3-36) and Gi
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
Authors:Kang, H, Park, C, Kim, J, Choi, H.-J.
Deposit date:2022-08-01
Release date:2023-03-22
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:Structural basis for Y2 receptor-mediated neuropeptide Y and peptide YY signaling.
Structure, 31, 2023
3LEO
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BU of 3leo by Molmil
Structure of human Leukotriene C4 synthase mutant R31Q in complex with glutathione
Descriptor: DODECYL-BETA-D-MALTOSIDE, GLUTATHIONE, GLYCEROL, ...
Authors:Niegowski, D, Martinez-Molina, D, Rinaldo-Matthis, A, Nordlund, P, Haeggstrom, J.
Deposit date:2010-01-15
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Arginine 104 is a key catalytic residue in leukotriene C4 synthase.
J.Biol.Chem., 285, 2010
3S3V
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BU of 3s3v by Molmil
human dihydrofolate reductase Q35K/N64F double mutant binary complex with trimethoprim
Descriptor: Dihydrofolate reductase, SULFATE ION, TRIMETHOPRIM
Authors:Cody, V, Pace, J, Piraino, J, Queener, S.F.
Deposit date:2011-05-18
Release date:2011-09-28
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Crystallographic analysis reveals a novel second binding site for trimethoprim in active site double mutants of human dihydrofolate reductase.
J.Struct.Biol., 176, 2011
3S4C
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BU of 3s4c by Molmil
Lactose phosphorylase in complex with sulfate
Descriptor: 1,4-DIETHYLENE DIOXIDE, Lactose Phosphorylase, SULFATE ION
Authors:Van Hoorebeke, A, Stout, J, Soetaert, W, Van Beeumen, J, Desmet, T, Savvides, S.
Deposit date:2011-05-19
Release date:2012-06-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Cellobiose phosphorylase: reconstructing the structural itinerary along the catalytic pathway
To be Published
2QYK
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Crystal structure of PDE4A10 in complex with inhibitor NPV
Descriptor: 4-[8-(3-nitrophenyl)-1,7-naphthyridin-6-yl]benzoic acid, Cyclic AMP-specific phosphodiesterase HSPDE4A10, MAGNESIUM ION, ...
Authors:Wang, H, Peng, M, Chen, Y, Geng, J, Robinson, H, Houslay, M.
Deposit date:2007-08-15
Release date:2008-04-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of the four subfamilies of phosphodiesterase-4 provide insight into the selectivity of their inhibitors.
Biochem.J., 408, 2007

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