Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42507 results

1F4Q
DownloadVisualize
BU of 1f4q by Molmil
CRYSTAL STRUCTURE OF APO GRANCALCIN
Descriptor: GRANCALCIN
Authors:Jia, J, Han, Q, Borregaard, N, Lollike, K, Cygler, M.
Deposit date:2000-06-08
Release date:2000-09-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human grancalcin, a member of the penta-EF-hand protein family.
J.Mol.Biol., 300, 2000
8OZ0
DownloadVisualize
BU of 8oz0 by Molmil
Structure of a human 48S translation initiation complex with eIF4F and eIF4A
Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Brito Querido, J, Sokabe, M, Diaz-Lopez, I, Gordiyenko, Y, Fraser, C.S, Ramakrishnan, V.
Deposit date:2023-05-06
Release date:2024-02-07
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The structure of a human translation initiation complex reveals two independent roles for the helicase eIF4A.
Nat.Struct.Mol.Biol., 31, 2024
7SD1
DownloadVisualize
BU of 7sd1 by Molmil
Crystal structure of SHOC2
Descriptor: Leucine-rich repeat protein SHOC-2
Authors:Liau, N.P.D, Hymowitz, S.G, Sudhamsu, J.
Deposit date:2021-09-29
Release date:2022-04-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Structural basis for SHOC2 modulation of RAS signalling.
Nature, 609, 2022
3N1C
DownloadVisualize
BU of 3n1c by Molmil
Crystal structure of the phosphofructokinase-2 from Escherichia coli in complex with fructose-6-phosphate
Descriptor: 6-O-phosphono-beta-D-fructofuranose, 6-phosphofructokinase isozyme 2
Authors:Pereira, H.M, Cabrera, R, Caniuguir, A, Garratt, R.C, Babul, J.
Deposit date:2010-05-15
Release date:2010-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Crystal Complex of Phosphofructokinase-2 of Escherichia coli with Fructose-6-phosphate: KINETIC AND STRUCTURAL ANALYSIS OF THE ALLOSTERIC ATP INHIBITION.
J.Biol.Chem., 286, 2011
6TW9
DownloadVisualize
BU of 6tw9 by Molmil
HumRadA22F in complex with CAM833
Descriptor: CALCIUM ION, DNA repair and recombination protein RadA, GLYCEROL, ...
Authors:Fischer, G, Marsh, M.E, Scott, D.E, Coyne, A.G, Skidmore, J, Abell, C, Hyvonen, M.
Deposit date:2020-01-12
Release date:2021-01-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:A small-molecule inhibitor of the BRCA2-RAD51 interaction modulates RAD51 assembly and potentiates DNA damage-induced cell death.
Cell Chem Biol, 28, 2021
7SKK
DownloadVisualize
BU of 7skk by Molmil
pertussis toxin in complex with ADPR and Nicotinamide
Descriptor: NICOTINAMIDE, Pertussis toxin subunit 1, SULFATE ION, ...
Authors:Littler, D.R, Beddoe, T, Pulliainen, A, Rossjohn, J.
Deposit date:2021-10-21
Release date:2022-04-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.65000772 Å)
Cite:Crystal structures of pertussis toxin with NAD + and analogs provide structural insights into the mechanism of its cytosolic ADP-ribosylation activity.
J.Biol.Chem., 298, 2022
7SD0
DownloadVisualize
BU of 7sd0 by Molmil
Cryo-EM structure of the SHOC2:PP1C:MRAS complex
Descriptor: Leucine-rich repeat protein SHOC-2, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Liau, N.P.D, Johnson, M.C, Hymowitz, S.G, Sudhamsu, J.
Deposit date:2021-09-29
Release date:2022-04-20
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:Structural basis for SHOC2 modulation of RAS signalling.
Nature, 609, 2022
6TXO
DownloadVisualize
BU of 6txo by Molmil
Crystal structure of the haemagglutinin mutant (Gln226Leu, Del228) from an H10N7 seal influenza virus isolated in Germany in complex with avian receptor analogue 3'-SLN
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhang, J, Xiong, X, Purkiss, A, Walker, P, Gamblin, S, Skehel, J.J.
Deposit date:2020-01-14
Release date:2020-10-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals.
Cell Host Microbe, 28, 2020
6U0I
DownloadVisualize
BU of 6u0i by Molmil
Putative Antitoxin HicB3 from Escherichia coli str. K-12 substr. DH10B
Descriptor: Antitoxin HicB, CHLORIDE ION
Authors:Osipiuk, J, Tesar, C, Endres, M, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-08-14
Release date:2019-08-28
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Putative Antitoxin HicB3 from Escherichia coli str. K-12 substr. DH10B
to be published
6U0T
DownloadVisualize
BU of 6u0t by Molmil
Protofilament Ribbon Flagellar Proteins Rib43a-S
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ichikawa, M, Khalifa, A.A.Z, Vargas, J, Basu, K, Bui, K.H.
Deposit date:2019-08-14
Release date:2019-09-25
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.16 Å)
Cite:Tubulin lattice in cilia is in a stressed form regulated by microtubule inner proteins.
Proc.Natl.Acad.Sci.USA, 116, 2019
6TYX
DownloadVisualize
BU of 6tyx by Molmil
Structure of Ku80 von Willebrand domain S229A mutant complexed with XLF Ku Binding Motif
Descriptor: LYS-GLY-LEU-PHE-MET, X-ray repair cross-complementing protein 5
Authors:Min, J, Pedersen, L.C.
Deposit date:2019-08-09
Release date:2019-11-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.89944351 Å)
Cite:Ligand binding characteristics of the Ku80 von Willebrand domain.
DNA Repair (Amst.), 85, 2019
8P61
DownloadVisualize
BU of 8p61 by Molmil
Crystal structure of O'nyong'nyong virus capsid protease (106-256)
Descriptor: Capsid protein, GLYCEROL, SULFATE ION
Authors:Plewka, J, Chykunova, Y, Wilk, P, Sienczyk, M, Dubin, G, Pyrc, K.
Deposit date:2023-05-24
Release date:2024-03-06
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Autoinhibition of suicidal capsid protease from O'nyong'nyong virus.
Int.J.Biol.Macromol., 262, 2024
8P7L
DownloadVisualize
BU of 8p7l by Molmil
Cryo-EM structure of CDK7 subunit of CAK in complex with inhibitor LDC4297
Descriptor: 2-[(3S)-piperidin-3-yl]oxy-8-propan-2-yl-N-[(2-pyrazol-1-ylphenyl)methyl]pyrazolo[1,5-a][1,3,5]triazin-4-amine, CDK-activating kinase assembly factor MAT1, Cyclin-dependent kinase 7
Authors:Cushing, V.I, Koh, A.F, Feng, J, Jurgaityte, K, Bahl, A.K, Ali, S, Kotecha, A, Greber, B.J.
Deposit date:2023-05-30
Release date:2024-03-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:High-resolution cryo-EM of the human CDK-activating kinase for structure-based drug design.
Nat Commun, 15, 2024
1F4O
DownloadVisualize
BU of 1f4o by Molmil
CRYSTAL STRUCTURE OF GRANCALCIN WITH BOUND CALCIUM
Descriptor: CALCIUM ION, GRANCALCIN
Authors:Jia, J, Han, Q, Borregaard, N, Lollike, K, Cygler, M.
Deposit date:2000-06-08
Release date:2000-09-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of human grancalcin, a member of the penta-EF-hand protein family.
J.Mol.Biol., 300, 2000
7S3L
DownloadVisualize
BU of 7s3l by Molmil
Structure of Bacillus subtilis CcrZ (previously called YtmP)
Descriptor: Aminoglycoside phosphotransferase family protein, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Nandakumar, J, Wozniak, K.J.
Deposit date:2021-09-07
Release date:2022-05-11
Last modified:2022-06-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and kinase activity of bacterial cell cycle regulator CcrZ.
Plos Genet., 18, 2022
8P64
DownloadVisualize
BU of 8p64 by Molmil
Co-crystal structure of PD-L1 with low molecular weight inhibitor
Descriptor: Programmed cell death 1 ligand 1, ~{N}-[[1-[(~{E})-2-(2-methyl-3-phenyl-phenyl)ethenyl]-1,2,3,4-tetrazol-5-yl]methyl]ethanamine
Authors:Plewka, J, Magiera-Mularz, K, van der Straat, R, Draijer, R, Surmiak, E, Butera, R, Land, L, Musielak, B, Domling, A.
Deposit date:2023-05-25
Release date:2024-03-06
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (3.312 Å)
Cite:1,5-Disubstituted tetrazoles as PD-1/PD-L1 antagonists.
Rsc Med Chem, 15, 2024
8P71
DownloadVisualize
BU of 8p71 by Molmil
Cryo-EM structure of CAK in complex with inhibitor ICEC0574
Descriptor: (3R,4S)-4-[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]pyrrolidin-3-ol, CDK-activating kinase assembly factor MAT1, Cyclin-H, ...
Authors:Cushing, V.I, Koh, A.F, Feng, J, Jurgaityte, K, Bahl, A.K, Ali, S, Kotecha, A, Greber, B.J.
Deposit date:2023-05-30
Release date:2024-03-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2 Å)
Cite:High-resolution cryo-EM of the human CDK-activating kinase for structure-based drug design.
Nat Commun, 15, 2024
8P79
DownloadVisualize
BU of 8p79 by Molmil
Cryo-EM structure of CAK with averaged inhibitor density
Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7
Authors:Cushing, V.I, Koh, A.F, Feng, J, Jurgaityte, K, Bahl, A.K, Ali, S, Kotecha, A, Greber, B.J.
Deposit date:2023-05-30
Release date:2024-03-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (1.7 Å)
Cite:High-resolution cryo-EM of the human CDK-activating kinase for structure-based drug design.
Nat Commun, 15, 2024
7SGS
DownloadVisualize
BU of 7sgs by Molmil
Cryo-EM structure of full-length MAP7 bound to the microtubule
Descriptor: Ensconsin, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Ferro, L.S, Fang, Q, Eshun-Wilson, L, Fernandes, J, Jack, A, Farrell, D.P, Golcuk, M, Huijben, T, Costa, K, Gur, M, DiMaio, F, Nogales, E, Yildiz, A.
Deposit date:2021-10-07
Release date:2022-05-18
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural and functional insight into regulation of kinesin-1 by microtubule-associated protein MAP7.
Science, 375, 2022
8P6Z
DownloadVisualize
BU of 8p6z by Molmil
Cryo-EM structure of CAK in complex with inhibitor ICEC0510-R
Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ...
Authors:Cushing, V.I, Koh, A.F, Feng, J, Jurgaityte, K, Bahl, A.K, Ali, S, Kotecha, A, Greber, B.J.
Deposit date:2023-05-30
Release date:2024-03-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:High-resolution cryo-EM of the human CDK-activating kinase for structure-based drug design.
Nat Commun, 15, 2024
8P6W
DownloadVisualize
BU of 8p6w by Molmil
Cryo-EM structure of CAK in complex with inhibitor BS-181
Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ...
Authors:Cushing, V.I, Koh, A.F, Feng, J, Jurgaityte, K, Bahl, A.K, Ali, S, Kotecha, A, Greber, B.J.
Deposit date:2023-05-30
Release date:2024-03-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (1.9 Å)
Cite:High-resolution cryo-EM of the human CDK-activating kinase for structure-based drug design.
Nat Commun, 15, 2024
6ZUF
DownloadVisualize
BU of 6zuf by Molmil
Urea-based Foldamer Inhibitor chimera C2 in complex with ASF1 Histone chaperone
Descriptor: C2 foldamer/peptide hybrid inhibitor of histone chaperone ASF1, GLYCEROL, Histone chaperone ASF1A, ...
Authors:Bakail, M, Mbianda, J, Perrin, E.M, Guerois, R, Legrand, P, Traore, S, Douat, C, Guichard, G, Ochsenbein, F.
Deposit date:2020-07-22
Release date:2021-06-09
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.798 Å)
Cite:Optimal anchoring of a foldamer inhibitor of ASF1 histone chaperone through backbone plasticity.
Sci Adv, 7, 2021
8P70
DownloadVisualize
BU of 8p70 by Molmil
Cryo-EM structure of CAK in complex with inhibitor ICEC0510-S
Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ...
Authors:Cushing, V.I, Koh, A.F, Feng, J, Jurgaityte, K, Bahl, A.K, Ali, S, Kotecha, A, Greber, B.J.
Deposit date:2023-05-30
Release date:2024-03-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2 Å)
Cite:High-resolution cryo-EM of the human CDK-activating kinase for structure-based drug design.
Nat Commun, 15, 2024
8P73
DownloadVisualize
BU of 8p73 by Molmil
Cryo-EM structure of CAK in complex with inhibitor ICEC0829
Descriptor: (3R,4R)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidine-3,4-diol, (3S,4S)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidine-3,4-diol, CDK-activating kinase assembly factor MAT1, ...
Authors:Cushing, V.I, Koh, A.F, Feng, J, Jurgaityte, K, Bahl, A.K, Ali, S, Kotecha, A, Greber, B.J.
Deposit date:2023-05-30
Release date:2024-03-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2 Å)
Cite:High-resolution cryo-EM of the human CDK-activating kinase for structure-based drug design.
Nat Commun, 15, 2024
8P74
DownloadVisualize
BU of 8p74 by Molmil
Cryo-EM structure of CAK in complex with inhibitor ICEC0880 (ring-up conformation)
Descriptor: (2S,3S)-3-[[7-[(2-bromophenyl)methylamino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]butane-1,2,4-triol, CDK-activating kinase assembly factor MAT1, Cyclin-H, ...
Authors:Cushing, V.I, Koh, A.F, Feng, J, Jurgaityte, K, Bahl, A.K, Ali, S, Kotecha, A, Greber, B.J.
Deposit date:2023-05-30
Release date:2024-03-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:High-resolution cryo-EM of the human CDK-activating kinase for structure-based drug design.
Nat Commun, 15, 2024

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon