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PDB: 17965 results

1GQM
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The structure of S100A12 in a hexameric form and its proposed role in receptor signalling
Descriptor: CALCIUM ION, CALGRANULIN C
Authors:Moroz, O.V, Antson, A.A, Dodson, E.G, Burrel, H.J, Grist, S.J, Lloyd, R.M, Maitland, N.J, Dodson, G.G, Wilson, K.S, Lukanidin, E, Bronstein, I.B.
Deposit date:2001-11-26
Release date:2002-02-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Structure of S100A12 in a Hexameric Form and its Proposed Role in Receptor Signalling
Acta Crystallogr.,Sect.D, 58, 2002
7UR2
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Crystal structure of the Sec14 domain of the RhoGEF Kalirin
Descriptor: Isoform 7 of Kalirin, SULFATE ION
Authors:Li, Y, Doukov, T.I, Hao, B.
Deposit date:2022-04-21
Release date:2023-01-18
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structure of the Sec14 domain of Kalirin reveals a distinct class of lipid-binding module in RhoGEFs.
Nat Commun, 14, 2023
8PC7
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BU of 8pc7 by Molmil
STRUCTURE OF ESTER-HYDROLASE EH3 FROM THE METAGENOME OF MARINE SEDIMENTS AT MILAZZO HARBOR (SICILY, ITALY) COMPLEXED WITH A DERIVATIVE OF BIPYRIDINE PHOSPHONATE
Descriptor: DI(HYDROXYETHYL)ETHER, Esterase, GLYCEROL, ...
Authors:Cea-Rama, I, Sanz-Aparicio, J.
Deposit date:2023-06-09
Release date:2023-07-19
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Transforming an esterase into an enantioselective catecholase through bioconjugation of a versatile metal-chelating inhibitor.
Chem.Commun.(Camb.), 59, 2023
1VYQ
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BU of 1vyq by Molmil
Novel inhibitors of Plasmodium Falciparum dUTPase provide a platform for anti-malarial drug design
Descriptor: 2,3-DEOXY-3-FLUORO-5-O-TRITYLURIDINE, DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
Authors:Whittingham, J.L, Leal, I, Kasinathan, G, Nguyen, C, Bell, E, Jones, A.F, Berry, C, Benito, A, Turkenburg, J.P, Dodson, E.J, Ruiz Perez, L.M, Wilkinson, A.J, Johansson, N.G, Brun, R, Gilbert, I.H, Gonzalez Pacanowska, D, Wilson, K.S.
Deposit date:2004-05-05
Release date:2005-05-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Dutpase as a Platform for Antimalarial Drug Design: Structural Basis for the Selectivity of a Class of Nucleoside Inhibitors.
Structure, 13, 2005
7PX3
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BU of 7px3 by Molmil
Structure of U5 snRNP assembly and recycling factor TSSC4 in complex with BRR2 and Jab1 domain of PRPF8
Descriptor: Pre-mRNA-processing-splicing factor 8, Protein TSSC4, U5 small nuclear ribonucleoprotein 200 kDa helicase
Authors:Bergfort, A, Kuropka, B, Ilik, I.A, Freund, C, Aktas, T, Hilal, T, Weber, G, Wahl, M.C.
Deposit date:2021-10-07
Release date:2022-01-26
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:The intrinsically disordered TSSC4 protein acts as a helicase inhibitor, placeholder and multi-interaction coordinator during snRNP assembly and recycling.
Nucleic Acids Res., 50, 2022
5EHL
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BU of 5ehl by Molmil
Rapid Discovery of Pyrido[3,4-d]pyrimidine Inhibitors of Monopolar Spindle kinase 1 (MPS1) Using a Structure-Based Hydridization Approach
Descriptor: 1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]urea, Dual specificity protein kinase TTK
Authors:Innocenti, P, Woodward, H.L, Solanki, S, Naud, N, Westwood, I.M, Cronin, N, Hayes, A, Roberts, J, Henley, A.T, Baker, R, Faisal, A, Mak, G, Box, G, Valenti, M, De Haven Brandon, A, O'Fee, L, Saville, J, Schmitt, J, Burke, R, van Montfort, R.L.M, Raymaud, F.I, Eccles, S.A, Linardopoulos, S, Blagg, J, Hoelder, S.
Deposit date:2015-10-28
Release date:2016-11-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Rapid Discovery of Pyrido[3,4-d]pyrimidine Inhibitors of Monopolar Spindle kinase 1 (MPS1) Using a Structure-Based Hydridization Approach
To Be Published
5M13
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BU of 5m13 by Molmil
Synthetic nanobody in complex with MBP
Descriptor: 1,2-ETHANEDIOL, Maltose-binding periplasmic protein, synthetic Nanobody L2_C06 (a-MBP#2)
Authors:Zimmermann, I, Egloff, P, Seeger, M.A.
Deposit date:2016-10-07
Release date:2017-11-15
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (1.372 Å)
Cite:Synthetic single domain antibodies for the conformational trapping of membrane proteins.
Elife, 7, 2018
5NJ3
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BU of 5nj3 by Molmil
Structure of an ABC transporter: complete structure
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5D3-Fab heavy chain, 5D3-Fab light chain, ...
Authors:Taylor, N.M.I, Manolaridis, I, Jackson, S.M, Kowal, J, Stahlberg, H, Locher, K.P.
Deposit date:2017-03-28
Release date:2017-06-07
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:Structure of the human multidrug transporter ABCG2.
Nature, 546, 2017
7RKL
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BU of 7rkl by Molmil
Structure of Nicotinamide N-Methyltransferase (NNMT) in complex with II399 (P1 space group)
Descriptor: 3-[3-(acetyl{[(1R,2R,3S,4R)-4-(4-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2,3-dihydroxycyclopentyl]methyl}amino)prop-1-yn-1-yl]benzamide, NNMT protein, SULFATE ION
Authors:Yadav, R, Noinaj, N, Iyamu, I.D, Huang, R.
Deposit date:2021-07-22
Release date:2022-07-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Exploring Unconventional SAM Analogues To Build Cell-Potent Bisubstrate Inhibitors for Nicotinamide N-Methyltransferase.
Angew.Chem.Int.Ed.Engl., 61, 2022
2LEJ
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BU of 2lej by Molmil
human prion protein mutant HuPrP(90-231, M129, V210I)
Descriptor: Major prion protein
Authors:Biljan, I, Ilc, G, Giachin, G, Raspadori, A, Zhukov, I, Plavec, J, Legname, G.
Deposit date:2011-06-16
Release date:2011-08-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Toward the Molecular Basis of Inherited Prion Diseases: NMR Structure of the Human Prion Protein with V210I Mutation.
J.Mol.Biol., 412, 2011
4LHM
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BU of 4lhm by Molmil
Thymidine phosphorylase from E.coli with 3'-azido-3'-deoxythymidine
Descriptor: 3'-azido-3'-deoxythymidine, GLYCEROL, SULFATE ION, ...
Authors:Timofeev, V.I, Abramchik, Y.A, Esipov, R.S, Kuranova, I.P.
Deposit date:2013-07-01
Release date:2014-04-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:3'-Azidothymidine in the active site of Escherichia coli thymidine phosphorylase: the peculiarity of the binding on the basis of X-ray study.
Acta Crystallogr.,Sect.D, 70, 2014
1HB2
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BU of 1hb2 by Molmil
ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN EXPOSED PRODUCT FROM ANAEROBIC ACOV FE COMPLEX)
Descriptor: FE (II) ION, ISOPENICILLIN N SYNTHASE, N6-[(1S)-2-{[(1R)-1-CARBOXY-2-METHYLPROPYL]OXY}-1-(MERCAPTOCARBONYL)-2-OXOETHYL]-6-OXO-L-LYSINE, ...
Authors:Ogle, J.M, Clifton, I.J, Rutledge, P.J, Elkins, J.M, Burzlaff, N.I, Adlington, R.M, Roach, P.L, Baldwin, J.E.
Deposit date:2001-04-11
Release date:2001-11-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Alternative Oxidation by Isopenicillin N Synthase Observed by X-Ray Diffraction.
Chem.Biol., 8, 2001
7UVA
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BU of 7uva by Molmil
Crystal structure of KDM2A histone demethylase catalytic domain in complex with an H3C36 peptide modified by UNC8015
Descriptor: FE (III) ION, Histone H3.2, Lysine-specific demethylase 2A, ...
Authors:Budziszewski, G.R, Azzam, D.N, Spangler, C.J, Skrajna, A, Foley, C.A, James, L.I, Frye, S.V, McGinty, R.K.
Deposit date:2022-04-29
Release date:2023-02-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural basis of paralog-specific KDM2A/B nucleosome recognition.
Nat.Chem.Biol., 19, 2023
6B65
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BU of 6b65 by Molmil
IMPase (AF2372) R92Q/K164E
Descriptor: DI(HYDROXYETHYL)ETHER, Fructose-1,6-bisphosphatase/inositol-1-monophosphatase, ISOPROPYL ALCOHOL, ...
Authors:Goldstein, R.I, Roberts, M.
Deposit date:2017-10-01
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.702 Å)
Cite:Osmolyte binding capacity of a dual action IMPase/FBPase (AF2372)
To Be Published
6GN3
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BU of 6gn3 by Molmil
Racemic crystal structure of A-DNA duplex formed from d(CCCGGG) in space group P21/n
Descriptor: CHLORIDE ION, COBALT (II) ION, DNA (5'-D(*CP*CP*CP*GP*GP*G)-3'), ...
Authors:Mandal, P.K, Collie, G.W, Kauffmann, B, Huc, I.
Deposit date:2018-05-29
Release date:2019-09-11
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Racemic crystal structures of A-DNA duplexes.
Acta Crystallogr D Struct Biol, 78, 2022
6B6G
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BU of 6b6g by Molmil
Crystal Structure of GABA Aminotransferase bound to (S)-3-Amino-4-(difluoromethylenyl)cyclopent-1-ene-1-carboxylic acid, an Potent Inactivatorfor the Treatment of Addiction
Descriptor: (3R,4E)-4-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)imino]cyclopent-1-ene-1,3-dicarboxylic acid, 4-aminobutyrate aminotransferase, mitochondrial, ...
Authors:Mascarenhas, R, Juncosa, J.I, Takaya, K, Le, L.V, Moschitto, M.J, Silverman, R.B, Liu, D.
Deposit date:2017-10-02
Release date:2018-02-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Design and Mechanism of (S)-3-Amino-4-(difluoromethylenyl)cyclopent-1-ene-1-carboxylic Acid, a Highly Potent gamma-Aminobutyric Acid Aminotransferase Inactivator for the Treatment of Addiction.
J. Am. Chem. Soc., 140, 2018
5NKU
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BU of 5nku by Molmil
Joint neutron/X-ray structure of dimeric chlorite dismutase from Cyanothece sp. PCC7425
Descriptor: CHLORIDE ION, Chlorite Dismutase, GLYCEROL, ...
Authors:Puehringer, D, Schaffner, I, Mlynek, G, Obinger, C, Djinovic-Carugo, K.
Deposit date:2017-04-03
Release date:2018-02-28
Last modified:2024-05-01
Method:NEUTRON DIFFRACTION (2 Å), X-RAY DIFFRACTION
Cite:Molecular Mechanism of Enzymatic Chlorite Detoxification: Insights from Structural and Kinetic Studies.
ACS Catal, 7, 2017
8D06
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BU of 8d06 by Molmil
Hallucinated C3 protein assembly HALC3_104
Descriptor: HALC3_104
Authors:Ragotte, R.J, Bera, A.K, Wicky, B.I.M, Milles, L.F, Baker, D.
Deposit date:2022-05-25
Release date:2022-09-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Hallucinating symmetric protein assemblies.
Science, 378, 2022
5N69
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BU of 5n69 by Molmil
Cardiac muscle myosin S1 fragment in the pre-powerstroke state co-crystallized with the activator Omecamtiv Mecarbil
Descriptor: 3,3',3''-phosphanetriyltripropanoic acid, ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, ...
Authors:Planelles-Herrero, V.J, Hartman, J.J, Robert-Paganin, J, Malik, F.I, Houdusse, A.
Deposit date:2017-02-14
Release date:2017-08-16
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Mechanistic and structural basis for activation of cardiac myosin force production by omecamtiv mecarbil.
Nat Commun, 8, 2017
1VZ4
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BU of 1vz4 by Molmil
Fe-Succinate Complex of AtsK
Descriptor: FE (II) ION, PUTATIVE ALKYLSULFATASE ATSK, SUCCINIC ACID
Authors:Mueller, I, Stueckl, A.C, Uson, I, Kertesz, M.
Deposit date:2004-05-14
Release date:2004-11-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Succinate Complex Crystal Structures of the Alpha-Ketoglutarate-Dependent Dioxygenase Atsk: Steric Aspects of Enzyme Self-Hydroxylation
J.Biol.Chem., 280, 2005
5N2V
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BU of 5n2v by Molmil
Changes in conformational equilibria regulate the activity of the Dcp2 decapping enzyme
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, Edc1, MAGNESIUM ION, ...
Authors:Holdermann, I, Sprangers, R.
Deposit date:2017-02-08
Release date:2017-05-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Changes in conformational equilibria regulate the activity of the Dcp2 decapping enzyme.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7PTB
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BU of 7ptb by Molmil
Crystal structure of the SPD-2 domain of human CEP192
Descriptor: Centrosomal protein of 192 kDa, NITRATE ION
Authors:Rosa e Silva, I, van Breugel, M.
Deposit date:2021-09-26
Release date:2022-04-06
Last modified:2022-04-20
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural validation and assessment of AlphaFold2 predictions for centrosomal and centriolar proteins and their complexes.
Commun Biol, 5, 2022
5WAU
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BU of 5wau by Molmil
Crystal Structure of CO-bound Cytochrome c Oxidase determined by Synchrotron X-Ray Crystallography at 100 K
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Fromme, R, Ishigami, I, Yeh, S.Y, Zatsepin, N, Grant, T, Fromme, P, Rousseau, D.
Deposit date:2017-06-27
Release date:2017-08-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of CO-bound cytochrome c oxidase determined by serial femtosecond X-ray crystallography at room temperature.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7PT5
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BU of 7pt5 by Molmil
Crystal structure of the CH domain of human CEP44
Descriptor: Centrosomal protein of 44 kDa
Authors:Rosa e Silva, I, van Breugel, M.
Deposit date:2021-09-26
Release date:2022-04-06
Last modified:2022-04-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural validation and assessment of AlphaFold2 predictions for centrosomal and centriolar proteins and their complexes.
Commun Biol, 5, 2022
6Y49
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BU of 6y49 by Molmil
Crystal structure of the paraoxon-modified A.17kappa antibody FAB fragment
Descriptor: A.17kappa antibody FAB fragment - Heavy Chain, A.17kappa antibody FAB fragment - Light Chain, DIETHYL PHOSPHONATE
Authors:Chatziefthimiou, S, Mokrushina, Y, Smirnov, I, Gabibov, A, Wilmanns, M.
Deposit date:2020-02-19
Release date:2020-09-16
Last modified:2020-09-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Multiscale computation delivers organophosphorus reactivity and stereoselectivity to immunoglobulin scavengers.
Proc.Natl.Acad.Sci.USA, 117, 2020

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