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PDB: 99 results

4GBD
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BU of 4gbd by Molmil
Crystal Structure Of Adenosine Deaminase From Pseudomonas Aeruginosa Pao1 with bound Zn and methylthio-coformycin
Descriptor: (8R)-3-(5-S-methyl-5-thio-beta-D-ribofuranosyl)-3,6,7,8-tetrahydroimidazo[4,5-d][1,3]diazepin-8-ol, PHOSPHATE ION, Putative uncharacterized protein, ...
Authors:Ho, M, Guan, R, Almo, S.C, Schramm, V.L.
Deposit date:2012-07-27
Release date:2013-06-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.975 Å)
Cite:Methylthioadenosine deaminase in an alternative quorum sensing pathway in Pseudomonas aeruginosa.
Biochemistry, 51, 2012
7CN9
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BU of 7cn9 by Molmil
Cryo-EM structure of SARS-CoV-2 Spike ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Ho, M, Chang, Y, Wang, C, Wu, Y, Huang, H, Chen, T, Lo, J.M, Chen, X, Ma, C.
Deposit date:2020-07-30
Release date:2020-08-26
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:A Carbohydrate-Binding Protein from the Edible Lablab Beans Effectively Blocks the Infections of Influenza Viruses and SARS-CoV-2.
Cell Rep, 32, 2020
3LOO
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BU of 3loo by Molmil
Crystal structure of Anopheles gambiae adenosine kinase in complex with P1,P4-di(adenosine-5) tetraphosphate
Descriptor: Anopheles gambiae adenosine kinase, BIS(ADENOSINE)-5'-TETRAPHOSPHATE, CHLORIDE ION, ...
Authors:Ho, M.-C, Cassera, M.B, Almo, S.C, Schramm, V.L.
Deposit date:2010-02-04
Release date:2011-02-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:A High-Affinity Adenosine Kinase from Anopheles gambiae.
Biochemistry, 50, 2011
3MB8
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BU of 3mb8 by Molmil
Crystal structure of purine nucleoside phosphorylase from toxoplasma gondii in complex with immucillin-H
Descriptor: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, GLYCEROL, PHOSPHATE ION, ...
Authors:Ho, M, Almo, S.C, Schramm, V.L.
Deposit date:2010-03-25
Release date:2011-04-06
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Inhibition and Structure of Toxoplasma gondii Purine Nucleoside Phosphorylase.
Eukaryot Cell, 13, 2014
3HIQ
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BU of 3hiq by Molmil
Crystal structure of Saporin-L1 mutant (Y73A) from Saponaria officinalis
Descriptor: Vacuolar saporin
Authors:Ho, M, Sturm, M.B, Almo, S.C, Schramm, V.L.
Deposit date:2009-05-20
Release date:2009-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Transition state analogues in structures of ricin and saporin ribosome-inactivating proteins.
Proc.Natl.Acad.Sci.USA, 106, 2009
3HIV
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BU of 3hiv by Molmil
Crystal structure of Saporin-L1 in complex with the trinucleotide inhibitor, a transition state analogue
Descriptor: (2R,3R,4R,5R)-5-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-2-({[(S)-({(3R,4R)-4-({[(S)-{[(2R,3R,4R,5R)-5-(2-amino-6-oxo-6,8-dihydro-9H-purin-9-yl)-2-(hydroxymethyl)-4-methoxytetrahydrofuran-3-yl]oxy}(hydroxy)phosphoryl]oxy}methyl)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]pyrrolidin-3-yl}oxy)(hydroxy)phosphoryl]oxy}methyl)-4-methoxytetrahydrofuran-3-yl 3-hydroxypropyl hydrogen (S)-phosphate, Vacuolar saporin
Authors:Ho, M, Sturm, M.B, Almo, S.C, Schramm, V.L.
Deposit date:2009-05-20
Release date:2009-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Transition state analogues in structures of ricin and saporin ribosome-inactivating proteins.
Proc.Natl.Acad.Sci.USA, 106, 2009
3HIT
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BU of 3hit by Molmil
Crystal structure of Saporin-L1 in complex with the dinucleotide inhibitor, a transition state analogue
Descriptor: 5'-O-[(S)-{[(3R,4R)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[(S)-hydroxy(3-hydroxypropoxy)phosphoryl]oxy}methyl)pyrrolidin-3-yl]oxy}(hydroxy)phosphoryl]-3'-O-[(R)-hydroxy(4-hydroxybutoxy)phosphoryl]-2'-O-methylguanosine, Vacuolar saporin
Authors:Ho, M, Sturm, M.B, Almo, S.C, Schramm, V.L.
Deposit date:2009-05-20
Release date:2009-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Transition state analogues in structures of ricin and saporin ribosome-inactivating proteins.
Proc.Natl.Acad.Sci.USA, 106, 2009
3HIO
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BU of 3hio by Molmil
Crystal structure of Ricin A-chain in complex with the cyclic tetranucleotide inhibitor, a transition state analogue
Descriptor: 9,9'-{(2R,3R,3aR,5S,7aR,9R,10R,10aR,12S,23R,25aR,27R,28R,28aR,30S,32aR,35aR,37S,39aR)-9-(6-amino-9H-purin-9-yl)-34-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-5,12,23,30,37-pentahydroxy-3,10,28-trimethoxy-5,12,23,30,37-pentaoxidotetracosahydro-2H,7H,25H-trifuro[3,2-f:3',2'-l:3'',2''-x]pyrrolo[3,4-r][1,3,5,9,11,15,17,21,23,27,29,2,4,10,16,22,28]undecaoxazapentaphosphacyclopentatriacontine-2,27-diyl}bis(2-amino-3,9-dihydro-6H-purin-6-one), Ricin, SULFATE ION
Authors:Ho, M, Sturm, M.B, Goldman, J.D, Almo, S.C, Schramm, V.L.
Deposit date:2009-05-20
Release date:2009-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Transition state analogues in structures of ricin and saporin ribosome-inactivating proteins.
Proc.Natl.Acad.Sci.USA, 106, 2009
3HIW
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BU of 3hiw by Molmil
Crystal structure of Saporin-L1 in complex with the cyclic tetranucleotide inhibitor, a transition state analogue
Descriptor: 9,9'-{(2R,3R,3aR,5S,7aR,9R,10R,10aR,12S,23R,25aR,27R,28R,28aR,30S,32aR,35aR,37S,39aR)-9-(6-amino-9H-purin-9-yl)-34-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-5,12,23,30,37-pentahydroxy-3,10,28-trimethoxy-5,12,23,30,37-pentaoxidotetracosahydro-2H,7H,25H-trifuro[3,2-f:3',2'-l:3'',2''-x]pyrrolo[3,4-r][1,3,5,9,11,15,17,21,23,27,29,2,4,10,16,22,28]undecaoxazapentaphosphacyclopentatriacontine-2,27-diyl}bis(2-amino-3,9-dihydro-6H-purin-6-one), Vacuolar saporin
Authors:Ho, M, Sturm, M.B, Almo, S.C, Schramm, V.L.
Deposit date:2009-05-20
Release date:2009-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Transition state analogues in structures of ricin and saporin ribosome-inactivating proteins.
Proc.Natl.Acad.Sci.USA, 106, 2009
3HIS
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BU of 3his by Molmil
Crystal structure of Saporin-L1 from Saponaria officinalis
Descriptor: Vacuolar saporin
Authors:Ho, M, Sturm, M.B, Almo, S.C, Schramm, V.L.
Deposit date:2009-05-20
Release date:2009-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Transition state analogues in structures of ricin and saporin ribosome-inactivating proteins.
Proc.Natl.Acad.Sci.USA, 106, 2009
3OZG
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BU of 3ozg by Molmil
Crystal Structure of Plasmodium falciparum Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase in complex with S-SerMe-ImmH phosphonate
Descriptor: Hypoxanthine-guanine-xanthine phosphoribosyltransferase, MAGNESIUM ION, PYROPHOSPHATE 2-, ...
Authors:Ho, M, Hazleton, K.Z, Almo, S.C, Schramm, V.L.
Deposit date:2010-09-24
Release date:2011-09-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.993 Å)
Cite:Acyclic Immucillin Phosphonates: Second-Generation Inhibitors of Plasmodium falciparum Hypoxanthine- Guanine-Xanthine Phosphoribosyltransferase.
Chem.Biol., 19, 2012
3OZF
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BU of 3ozf by Molmil
Crystal Structure of Plasmodium falciparum Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase in complex with hypoxanthine
Descriptor: HYPOXANTHINE, Hypoxanthine-guanine-xanthine phosphoribosyltransferase, MAGNESIUM ION, ...
Authors:Ho, M, Hazleton, K.Z, Almo, S.C, Schramm, V.L.
Deposit date:2010-09-24
Release date:2011-09-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.944 Å)
Cite:Acyclic Immucillin Phosphonates: Second-Generation Inhibitors of Plasmodium falciparum Hypoxanthine- Guanine-Xanthine Phosphoribosyltransferase.
Chem.Biol., 19, 2012
3OZB
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BU of 3ozb by Molmil
Crystal Structure of 5'-methylthioinosine phosphorylase from Psedomonas aeruginosa in complex with hypoxanthine
Descriptor: HYPOXANTHINE, Methylthioadenosine phosphorylase, SULFATE ION
Authors:Ho, M, Guan, R, Almo, S.C, Schramm, V.L.
Deposit date:2010-09-24
Release date:2011-08-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Methylthioinosine phosphorylase from Pseudomonas aeruginosa. Structure and annotation of a novel enzyme in quorum sensing.
Biochemistry, 50, 2011
5WSL
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BU of 5wsl by Molmil
Structural studies of keratinase from Meiothermus taiwanensis WR-220
Descriptor: CALCIUM ION, SULFATE ION, keratinase
Authors:Ho, M.C, Wu, S.H, Chen, M.Y, Tu, I.F.
Deposit date:2016-12-07
Release date:2017-10-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The discovery of novel heat-stable keratinases from Meiothermus taiwanensis WR-220 and other extremophiles
Sci Rep, 7, 2017
4EB8
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BU of 4eb8 by Molmil
Crystal structure of purine nucleoside phosphorylase (W16Y, W94Y, W178Y, H257W) mutant from human complexed with DADMe-ImmG and phosphate
Descriptor: 1,2-ETHANEDIOL, 2-amino-7-{[(3R,4R)-3-hydroxy-4-(hydroxymethyl)pyrrolidin-1-yl]methyl}-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one, PHOSPHATE ION, ...
Authors:Ho, M.C, Haapalainen, A.M, Suarez, J.J, Almo, S.C, Schramm, V.L.
Deposit date:2012-03-23
Release date:2013-02-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Catalytic Site Conformations in Human PNP by (19)F-NMR and Crystallography.
Chem.Biol., 20, 2013
3DKL
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BU of 3dkl by Molmil
Crystal structure of phosphorylated mimic form of human NAMPT complexed with benzamide and phosphoribosyl pyrophosphate
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, BENZAMIDE, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Ho, M, Burgos, E.S, Almo, S.C, Schramm, V.L.
Deposit date:2008-06-25
Release date:2009-08-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:A phosphoenzyme mimic, overlapping catalytic sites and reaction coordinate motion for human NAMPT.
Proc.Natl.Acad.Sci.USA, 106, 2009
3DHF
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BU of 3dhf by Molmil
Crystal structure of phosphorylated mimic form of human NAMPT complexed with nicotinamide mononucleotide and pyrophosphate
Descriptor: BERYLLIUM TRIFLUORIDE ION, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, MAGNESIUM ION, ...
Authors:Ho, M, Burgos, E.S, Almo, S.C, Schramm, V.L.
Deposit date:2008-06-17
Release date:2009-08-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A phosphoenzyme mimic, overlapping catalytic sites and reaction coordinate motion for human NAMPT.
Proc.Natl.Acad.Sci.USA, 106, 2009
3BH2
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BU of 3bh2 by Molmil
Structural Studies of Acetoacetate Decarboxylase
Descriptor: Acetoacetate decarboxylase
Authors:Ho, M, Allen, K.N.
Deposit date:2007-11-27
Release date:2008-12-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The origin of the electrostatic perturbation in acetoacetate decarboxylase.
Nature, 459, 2009
3PHB
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BU of 3phb by Molmil
Crystal Structure of human purine nucleoside phosphorylase in complex with DADMe-ImmG
Descriptor: 2-amino-7-{[(3R,4R)-3-hydroxy-4-(hydroxymethyl)pyrrolidin-1-yl]methyl}-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one, PHOSPHATE ION, Purine nucleoside phosphorylase
Authors:Ho, M, Cassera, M.B, Murkin, A.S, Almo, S.C, Schramm, V.L.
Deposit date:2010-11-03
Release date:2011-11-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of human purine nucleoside phosphorylase in complex with DADMe-ImmG
to be published
2KV3
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BU of 2kv3 by Molmil
Human Regenerating Gene Type IV (REG IV) PROTEIN, P91S mutant
Descriptor: Regenerating islet-derived protein 4
Authors:Ho, M, Lou, Y, Chen, C.
Deposit date:2010-03-04
Release date:2010-08-18
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:Human RegIV protein adopts a typical C-type lectin fold but binds mannan with two calcium-independent sites.
J.Mol.Biol., 402, 2010
4G56
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BU of 4g56 by Molmil
Crystal Structure of full length PRMT5/MEP50 complexes from Xenopus laevis
Descriptor: Hsl7 protein, MGC81050 protein, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Ho, M, Wilczek, C, Bonanno, J, Shechter, D, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2012-07-17
Release date:2012-10-03
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure of the arginine methyltransferase PRMT5-MEP50 reveals a mechanism for substrate specificity
Plos One, 8, 2013
3BGT
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BU of 3bgt by Molmil
Structural Studies of Acetoacetate Decarboxylase
Descriptor: Probable acetoacetate decarboxylase
Authors:Ho, M, Allen, K.N.
Deposit date:2007-11-27
Release date:2008-12-23
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The origin of the electrostatic perturbation in acetoacetate decarboxylase.
Nature, 459, 2009
3BH3
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BU of 3bh3 by Molmil
Crystal structure of acetoacetate decarboxylase from Chromobacterium violaceum in complex with acetyl acetone Schiff base intermediate
Descriptor: Acetoacetate decarboxylase, pentan-2-one
Authors:Ho, M, Allen, K.N.
Deposit date:2007-11-27
Release date:2008-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The origin of the electrostatic perturbation in acetoacetate decarboxylase.
Nature, 459, 2009
3DHD
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BU of 3dhd by Molmil
Crystal structure of human NAMPT complexed with nicotinamide mononucleotide and pyrophosphate
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, MAGNESIUM ION, Nicotinamide phosphoribosyltransferase, ...
Authors:Ho, M, Burgos, E.S, Almo, S.C, Schramm, V.L.
Deposit date:2008-06-17
Release date:2009-08-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:A phosphoenzyme mimic, overlapping catalytic sites and reaction coordinate motion for human NAMPT.
Proc.Natl.Acad.Sci.USA, 106, 2009
3DKJ
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BU of 3dkj by Molmil
Crystal structure of human NAMPT complexed with benzamide and phosphoribosyl pyrophosphate
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, BENZAMIDE, Nicotinamide phosphoribosyltransferase
Authors:Ho, M, Burgos, E.S, Almo, S.C, Schramm, V.L.
Deposit date:2008-06-25
Release date:2009-08-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:A phosphoenzyme mimic, overlapping catalytic sites and reaction coordinate motion for human NAMPT.
Proc.Natl.Acad.Sci.USA, 106, 2009

 

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