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PDB: 1134 results

9KQC
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BU of 9kqc by Molmil
Chlorella virus Hyaluronan Synthase bound to VNAR
Descriptor: Hyaluronan synthase, MANGANESE (II) ION, URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE, ...
Authors:Deng, P, Zhang, X, Xu, M, Wen, J, Li, P, Bi, Y, Wang, H.
Deposit date:2024-11-25
Release date:2025-05-14
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Generation of shark Single-Domain antibodies as an aid for Cryo-EM structure determination of membrane Proteins: Use hyaluronan synthase as an example.
J Struct Biol X, 2025
7CUV
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BU of 7cuv by Molmil
Crystal structure of a novel alpha/beta hydrolase in apo form
Descriptor: alpha/beta hydrolase
Authors:Gao, J, Han, X, Zheng, Y.Y, Liu, W.D.
Deposit date:2020-08-25
Release date:2021-08-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Multiple Substrate Binding Mode-Guided Engineering of a Thermophilic PET Hydrolase.
Acs Catalysis, 12, 2022
7LLY
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BU of 7lly by Molmil
Oxyntomodulin-bound Glucagon-Like Peptide-1 (GLP-1) Receptor in complex with Gs protein
Descriptor: Glucagon-like peptide 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Wootten, D, Sexton, P.M, Belousoff, M.J, Danev, R, Zhang, X, Khoshouei, M, Venugopal, H.
Deposit date:2021-02-04
Release date:2022-01-12
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Dynamics of GLP-1R peptide agonist engagement are correlated with kinetics of G protein activation.
Nat Commun, 13, 2022
7LLL
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BU of 7lll by Molmil
Exendin-4-bound Glucagon-Like Peptide-1 (GLP-1) Receptor in complex with Gs protein
Descriptor: Exendin-4, Glucagon-like peptide 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Wootten, D, Sexton, P.M, Belousoff, M.J, Danev, R, Zhang, X, Khoshouei, M, Venugopal, H.
Deposit date:2021-02-04
Release date:2022-01-12
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Dynamics of GLP-1R peptide agonist engagement are correlated with kinetics of G protein activation.
Nat Commun, 13, 2022
8RI4
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BU of 8ri4 by Molmil
Crystal structure of the SARS-CoV-2 Main Protease inhibited by (2-methylsulfanyl-6,7-dihydro-[1,4]dioxino[2,3-f]benzimidazol-3-yl)-(p-tolyl)methanone
Descriptor: 3C-like proteinase nsp5, 4-METHYLBENZOIC ACID, DIMETHYL SULFOXIDE, ...
Authors:Charton, J, Deprez, B, Hanoulle, X.
Deposit date:2023-12-18
Release date:2025-01-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the SARS-CoV-2 Main Protease inhibited by (2-methylsulfanyl-6,7-dihydro-[1,4]dioxino[2,3-f]benzimidazol-3-yl)-(p-tolyl)methanone
To Be Published
8AJ8
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BU of 8aj8 by Molmil
Structure of p110 gamma bound to the p84 regulatory subunit
Descriptor: Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform, Phosphoinositide 3-kinase regulatory subunit 6
Authors:Burke, J.E, Williams, R.L, Zhang, X.
Deposit date:2022-07-27
Release date:2023-03-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (8.5 Å)
Cite:Molecular basis for differential activation of p101 and p84 complexes of PI3K gamma by Ras and GPCRs.
Cell Rep, 42, 2023
3JB5
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BU of 3jb5 by Molmil
Capsid Structure of the Propionibacterium acnes Bacteriophage ATCC_Clear
Descriptor: major capsid protein
Authors:Chiou, J, Zhang, X, Marinelli, L.J, Modlin, R.L, Zhou, Z.H.
Deposit date:2015-07-23
Release date:2016-07-27
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Capsid Structure of the Propionibacterium acnes Bacteriophage ATCC_Clear
To be Published
2PJH
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BU of 2pjh by Molmil
Strctural Model of the p97 N domain- npl4 UBD complex
Descriptor: Nuclear protein localization protein 4 homolog, Transitional endoplasmic reticulum ATPase
Authors:Isaacson, R, Pye, V.E, Simpson, S, Meyer, H.H, Zhang, X, Freemont, P.
Deposit date:2007-04-16
Release date:2007-05-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Detailed structural insights into the p97-Npl4-Ufd1 interface.
J.Biol.Chem., 282, 2007
9Q90
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BU of 9q90 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA (36-MER), ...
Authors:Ye, F, Gao, F, Zhang, X.
Deposit date:2025-02-26
Release date:2025-04-09
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF
To Be Published
4DEN
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BU of 4den by Molmil
Structural insightsinto potent, specific anti-HIV property of actinohivin; Crystal structure of actinohivin in complex with alpha(1-2) mannobiose moiety of high-mannose type glycan of gp120
Descriptor: Actinohivin, POTASSIUM ION, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose
Authors:Hoque, M.M, Suzuki, K, Tsunoda, M, Jiang, J, Zhang, F, Takahashi, A, Naomi, O, Zhang, X, Sekiguchi, T, Tanaka, H, Omura, S, Takenaka, A.
Deposit date:2012-01-20
Release date:2012-11-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural insights into the specific anti-HIV property of actinohivin: structure of its complex with the alpha(1–2)mannobiose moiety of gp120
Acta Crystallogr.,Sect.D, 68, 2012
8I4H
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BU of 8i4h by Molmil
Omicron spike variant BA.1 with Bn03
Descriptor: Bn03, Spike glycoprotein
Authors:Hao, A.H, Zhang, X, Chen, Z.G, Sun, L.
Deposit date:2023-01-19
Release date:2024-01-31
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.81 Å)
Cite:Defining a highly conserved cryptic epitope for antibody recognition of SARS-CoV-2 variants.
Signal Transduct Target Ther, 8, 2023
9Q96
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BU of 9q96 by Molmil
Cryo-EM Structure of Bacterial RNA polymerase-sigma54 transcription open complex with wild type sigma54, from RPi(-10-1)
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Gao, F, Zhang, X.
Deposit date:2025-02-26
Release date:2025-03-12
Last modified:2025-05-07
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q95
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BU of 9q95 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -10 to -1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA (32-MER), ...
Authors:Gao, F, Zhang, X.
Deposit date:2025-02-26
Release date:2025-03-26
Last modified:2025-05-07
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q98
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BU of 9q98 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA Non-template strand (34-MER), ...
Authors:Gao, F, Zhang, X.
Deposit date:2025-02-26
Release date:2025-03-26
Last modified:2025-05-07
Method:ELECTRON MICROSCOPY (8.3 Å)
Cite:Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q97
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BU of 9q97 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA-directed RNA polymerase subunit alpha, ...
Authors:Gao, F, Zhang, X.
Deposit date:2025-02-26
Release date:2025-03-26
Last modified:2025-05-07
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q91
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BU of 9q91 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 6
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Gao, F, Zhang, X.
Deposit date:2025-02-26
Release date:2025-04-02
Last modified:2025-05-07
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
4LT5
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BU of 4lt5 by Molmil
Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA
Descriptor: 1,2-ETHANEDIOL, DNA, MANGANESE (II) ION, ...
Authors:Hashimoto, H, Pais, J.E, Zhang, X, Saleh, L, Fu, Z.Q, Dai, N, Correa, I.R, Roberts, R.J, Zheng, Y, Cheng, X.
Deposit date:2013-07-23
Release date:2013-12-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.893 Å)
Cite:Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA.
Nature, 506, 2014
4M9E
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BU of 4m9e by Molmil
Structure of Klf4 zinc finger DNA binding domain in complex with methylated DNA
Descriptor: ACETATE ION, DNA (5'-D(*GP*AP*GP*GP*(5CM)P*GP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*(5CM)P*GP*CP*CP*TP*C)-3'), ...
Authors:Liu, Y, Olanrewaju, Y.O, Blumenthal, R.M, Zhang, X, Cheng, X.
Deposit date:2013-08-14
Release date:2014-02-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Structural basis for Klf4 recognition of methylated DNA.
Nucleic Acids Res., 42, 2014
4M9V
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BU of 4m9v by Molmil
Zfp57 mutant (E182Q) in complex with 5-carboxylcytosine DNA
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Liu, Y, Olanrewaju, Y.O, Zhang, X, Cheng, X.
Deposit date:2013-08-15
Release date:2013-11-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (0.969 Å)
Cite:DNA recognition of 5-carboxylcytosine by a zfp57 mutant at an atomic resolution of 0.97 angstrom.
Biochemistry, 52, 2013
5EZK
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BU of 5ezk by Molmil
RNA polymerase model placed by Molecular replacement into X-ray diffraction map of DNA-bound RNA Polymerase-Sigma 54 holoenzyme complex.
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Darbari, V.C, Yang, Y, Lu, D, Zhang, N, Glyde, R, Wang, Y, Murakami, K.S, Buck, M, Zhang, X.
Deposit date:2015-11-26
Release date:2015-12-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (8.5 Å)
Cite:TRANSCRIPTION. Structures of the RNA polymerase- Sigma 54 reveal new and conserved regulatory strategies.
Science, 349, 2015
7BW7
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BU of 7bw7 by Molmil
Cryo-EM Structure for the Ectodomain of the Full-length Human Insulin Receptor in Complex with 1 Insulin.
Descriptor: Insulin fusion, Insulin receptor
Authors:Yu, D, Zhang, X, Sun, J, Li, X, Wu, Z, Han, X, Fan, C, Ma, Y, Ouyang, Q, Wang, T.
Deposit date:2020-04-13
Release date:2021-04-14
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Insulin Binding Induced the Ectodomain Conformational Dynamics in the Full-length Human Insulin Receptor
To Be Published
7BW8
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BU of 7bw8 by Molmil
Cryo-EM Structure for the Insulin Binding Region in the Ectodomain of the Full-length Human Insulin Receptor in Complex with 1 Insulin
Descriptor: Insulin fusion, Insulin receptor
Authors:Yu, D, Zhang, X, Sun, J, Li, X, Wu, Z, Han, X, Fan, C, Ma, Y, Ouyang, Q, Wang, T.
Deposit date:2020-04-14
Release date:2021-04-14
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Insulin Binding Induced the Ectodomain Conformational Dynamics in the Full-length Human Insulin Receptor
To Be Published
7BWA
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BU of 7bwa by Molmil
Cryo-EM Structure for the Ectodomain of the Full-length Human Insulin Receptor in Complex with 2 Insulin
Descriptor: Insulin fusion, Insulin receptor
Authors:Yu, D, Zhang, X, Sun, J, Li, X, Wu, Z, Han, X, Fan, C, Ma, Y, Ouyang, Q, Wang, T.
Deposit date:2020-04-14
Release date:2021-04-14
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Insulin Binding Induced the Ectodomain Conformational Dynamics in the Full-length Human Insulin Receptor
To Be Published
7CCR
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BU of 7ccr by Molmil
Structure of the 2:2 cGAS-nucleosome complex
Descriptor: Cyclic GMP-AMP synthase, DNA (147-MER), Histone H2A type 1-B/E, ...
Authors:Cao, D, Han, X, Fan, X, Xu, R.M, Zhang, X.
Deposit date:2020-06-17
Release date:2020-10-07
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Structural basis for nucleosome-mediated inhibition of cGAS activity.
Cell Res., 30, 2020
5EYO
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BU of 5eyo by Molmil
The crystal structure of the Max bHLH domain in complex with 5-carboxyl cytosine DNA
Descriptor: DNA (5'-D(*AP*GP*TP*AP*GP*CP*AP*(1CC)P*GP*TP*GP*CP*TP*AP*CP*T)-3'), Protein max
Authors:Wang, D, Hashimoto, H, Zhang, X, Cheng, X.
Deposit date:2015-11-25
Release date:2016-12-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:MAX is an epigenetic sensor of 5-carboxylcytosine and is altered in multiple myeloma.
Nucleic Acids Res., 45, 2017

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PDB entries from 2025-05-21

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