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PDB: 29 件

1YYJ
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The NMR solution structure of a redesigned apocytochrome b562:Rd-apocyt b562
分子名称: redesigned apocytochrome B562
著者Feng, H, Takei, J, Lipsitz, R, Tjandra, N, Bai, Y, Berkeley Structural Genomics Center (BSGC)
登録日2005-02-25
公開日2005-08-25
最終更新日2023-09-27
実験手法SOLUTION NMR
主引用文献Specific non-native hydrophobic interactions in a hidden folding intermediate: implications for protein folding
Biochemistry, 42, 2003
1YZC
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BU of 1yzc by Molmil
The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N- and a part of the C-terminal helices unfolded
分子名称: edesigned apo-cytochrome b562
著者Feng, H, Zhou, Z, Bai, Y, Berkeley Structural Genomics Center (BSGC)
登録日2005-02-28
公開日2006-03-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献A protein folding pathway with multiple folding intermediates at atomic resolution
Proc.Natl.Acad.Sci.Usa, 102, 2005
1YYX
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The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) at 2.8M urea
分子名称: Redesigned apo-cytochrome b562
著者Feng, H, Vu, N, Bai, Y, Berkeley Structural Genomics Center (BSGC)
登録日2005-02-25
公開日2005-08-25
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Detection and structure determination of an equilibrium unfolding intermediates of Rd-apocytochrome b562: native fold with non-native hydrophobic interactions
J.Mol.Biol., 343, 2004
1YZA
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BU of 1yza by Molmil
The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N-terminal helix unfolded
分子名称: Redesigned apo-cytochrome b562
著者Feng, H, Takei, T, Lipsitz, R, Tjandra, N, Bai, Y, Berkeley Structural Genomics Center (BSGC)
登録日2005-02-28
公開日2005-08-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Specific non-native hydrophobic interactions in a hidden folding intermediate: implication for protein folding
Biochemistry, 42, 2003
4RL2
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Structural and mechanistic insights into NDM-1 catalyzed hydrolysis of cephalosporins
分子名称: (1R)-2-({(R)-carboxy[(2R,5S)-4-carboxy-5-methyl-5,6-dihydro-2H-1,3-thiazin-2-yl]methyl}amino)-2-oxo-1-phenylethanaminium, Beta-lactamase NDM-1, ZINC ION
著者Feng, H, Ding, J, Zhu, D, Liu, X, Xu, X, Zhang, Y, Zang, S, Wang, D.-C, Liu, W.
登録日2014-10-15
公開日2014-11-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.008 Å)
主引用文献Structural and Mechanistic Insights into NDM-1 Catalyzed Hydrolysis of Cephalosporins.
J.Am.Chem.Soc., 136, 2014
4RM5
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Structural and mechanistic insights into NDM-1 catalyzed hydrolysis of cephalosporins
分子名称: Beta-lactamase NDM-1, ZINC ION
著者Feng, H, Ding, J, Zhu, D, Liu, X, Xu, X, Zhang, Y, Zang, S, Wang, D.-C, Liu, W.
登録日2014-10-19
公開日2014-11-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and Mechanistic Insights into NDM-1 Catalyzed Hydrolysis of Cephalosporins.
J.Am.Chem.Soc., 136, 2014
4RL0
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Structural and mechanistic insights into NDM-1 catalyzed hydrolysis of cephalosporins
分子名称: (2R,5S)-5-[(carbamoyloxy)methyl]-2-[(R)-carboxy{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}methyl]-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, Beta-lactamase NDM-1, ZINC ION
著者Feng, H, Ding, J, Zhu, D, Liu, X, Xu, X, Zhang, Y, Zang, S, Wang, D.-C, Liu, W.
登録日2014-10-14
公開日2014-11-19
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural and Mechanistic Insights into NDM-1 Catalyzed Hydrolysis of Cephalosporins.
J.Am.Chem.Soc., 136, 2014
5HDK
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Crystal structure of heat shock factor 2-DBD
分子名称: CHLORIDE ION, Heat shock factor protein 2, POTASSIUM ION, ...
著者Feng, H, Liu, W, Wang, D.C.
登録日2016-01-05
公開日2017-01-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献HSF1-DBD crystal structure
To Be Published
5HDG
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crystal structure of heat shock factor 1-DBD
分子名称: Heat shock factor protein 1, SODIUM ION
著者Feng, H, Liu, W, Wang, D.C.
登録日2016-01-05
公開日2017-01-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献HSF1-DBD crystal structure
To Be Published
5HDN
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Crystal structure of heat shock factor1-DBD complex with ds-DNA and TtT
分子名称: CITRIC ACID, DNA (5'-D(*GP*GP*TP*TP*CP*TP*AP*GP*AP*AP*CP*C)-3'), Heat shock factor protein 1, ...
著者Feng, H, Liu, W, Wang, D.C.
登録日2016-01-05
公開日2017-01-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献HSF1-DBD crystal structure
To Be Published
5YPI
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Crystal structure of NDM-1 bound to hydrolyzed imipenem representing an EI1 complex
分子名称: (2R)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-(2-methanimidamidoethylsulfanyl)-2,3-dihydro-1H-pyrrole -5-carboxylic acid, CHLORIDE ION, GLYCEROL, ...
著者Feng, H, Wang, D, Liu, W.
登録日2017-11-01
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The mechanism of NDM-1-catalyzed carbapenem hydrolysis is distinct from that of penicillin or cephalosporin hydrolysis.
Nat Commun, 8, 2017
5YPK
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Crystal structure of NDM-1 bound to hydrolyzed imipenem representing an EI2 complex
分子名称: (2R,4S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-[(2-{[(Z)-iminomethyl]amino}ethyl)sulfanyl]-3,4-dihydro-2H-pyrrole-5-ca rboxylic acid, CHLORIDE ION, Metallo-beta-lactamase NDM-1, ...
著者Feng, H, Wang, D, Liu, W.
登録日2017-11-02
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The mechanism of NDM-1-catalyzed carbapenem hydrolysis is distinct from that of penicillin or cephalosporin hydrolysis.
Nat Commun, 8, 2017
5YPL
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Crystal structure of NDM-1 bound to hydrolyzed imipenem representing an EP complex
分子名称: (2R,4S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-[(2-{[(Z)-iminomethyl]amino}ethyl)sulfanyl]-3,4-dihydro-2H-pyrrole-5-ca rboxylic acid, CHLORIDE ION, Metallo-beta-lactamase NDM-1, ...
著者Feng, H, Wang, D, Liu, W.
登録日2017-11-02
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The mechanism of NDM-1-catalyzed carbapenem hydrolysis is distinct from that of penicillin or cephalosporin hydrolysis.
Nat Commun, 8, 2017
5YPN
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Crystal structure of NDM-1 bound to hydrolyzed meropenem representing an EI2 complex
分子名称: (2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy l)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid, Metallo-beta-lactamase NDM-1, SULFATE ION, ...
著者Feng, H, Liu, W, Wang, D.
登録日2017-11-02
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献The mechanism of NDM-1-catalyzed carbapenem hydrolysis is distinct from that of penicillin or cephalosporin hydrolysis.
Nat Commun, 8, 2017
5YPM
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BU of 5ypm by Molmil
Crystal structure of NDM-1 bound to hydrolyzed meropenem representing an EI1 complex
分子名称: (2S,3R)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfan yl-3-methyl-2,3-dihydro-1H-pyrrole-5-carboxylic acid, Metallo-beta-lactamase NDM-1, SULFATE ION, ...
著者Feng, H, Wang, D, Liu, W.
登録日2017-11-02
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献The mechanism of NDM-1-catalyzed carbapenem hydrolysis is distinct from that of penicillin or cephalosporin hydrolysis.
Nat Commun, 8, 2017
7YVB
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Aplysia californica FaNaC in ligand bound state
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FMRFamide-gated Na+ channel, ...
著者Chen, Q.F, Liu, F.L, Dang, Y, Feng, H, Zhang, Z, Ye, S.
登録日2022-08-19
公開日2023-08-09
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structure and mechanism of a neuropeptide-activated channel in the ENaC/DEG superfamily.
Nat.Chem.Biol., 19, 2023
7YVC
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Aplysia californica FaNaC in apo state
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Chen, Q.F, Liu, F.L, Dang, Y, Feng, H, Zhang, Z, Ye, S.
登録日2022-08-19
公開日2023-08-09
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structure and mechanism of a neuropeptide-activated channel in the ENaC/DEG superfamily.
Nat.Chem.Biol., 19, 2023
2RPI
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BU of 2rpi by Molmil
The NMR structure of the submillisecond folding intermediate of the Thermus thermophilus ribonuclease H
分子名称: Ribonuclease H
著者Zhou, Z, Feng, H, Bai, Y.
登録日2008-05-16
公開日2009-03-31
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献The high-resolution NMR structure of the early folding intermediate of the Thermus thermophilus ribonuclease H
J.Mol.Biol., 384, 2008
2AXL
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BU of 2axl by Molmil
Solution structure of a multifunctional DNA- and protein-binding domain of human Werner syndrome protein
分子名称: Werner syndrome
著者Hu, J.-S, Feng, H, Zeng, W, Lin, G.-X, Xi, X.G.
登録日2005-09-05
公開日2005-12-13
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of a multifunctional DNA- and protein-binding motif of human Werner syndrome protein.
Proc.Natl.Acad.Sci.Usa, 102, 2005
2JSS
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BU of 2jss by Molmil
NMR structure of chaperone Chz1 complexed with histone H2A.Z-H2B
分子名称: Chimera of Histone H2B.1 and Histone H2A.Z, Uncharacterized protein YER030W
著者Zhou, Z, Feng, H, Hansen, D.F, Kato, H, Luk, E, Freedberg, D.I, Kay, L.E, Wu, C, Bai, Y.
登録日2007-07-11
公開日2008-05-20
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献NMR structure of chaperone Chz1 complexed with histones H2A.Z-H2B.
Nat.Struct.Mol.Biol., 15, 2008
2L5A
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BU of 2l5a by Molmil
Structural basis for recognition of centromere specific histone H3 variant by nonhistone Scm3
分子名称: Histone H3-like centromeric protein CSE4, Protein SCM3, Histone H4
著者Zhou, Z, Feng, H, Zhou, B, Ghirlando, R, Hu, K, Zwolak, A, Jenkins, L, Xiao, H, Tjandra, N, Wu, C, Bai, Y.
登録日2010-10-28
公開日2011-03-16
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis for recognition of centromere histone variant CenH3 by the chaperone Scm3.
Nature, 472, 2011
2LY8
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BU of 2ly8 by Molmil
The budding yeast chaperone Scm3 recognizes the partially unfolded dimer of the centromere-specific Cse4/H4 histone variant
分子名称: Budding yeast chaperone Scm3
著者Hong, J, Feng, H, Zhou, Z, Ghirlando, R, Bai, Y.
登録日2012-09-13
公開日2012-12-12
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Identification of Functionally Conserved Regions in the Structure of the Chaperone/CenH3/H4 Complex.
J.Mol.Biol., 425, 2013
7BYF
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The crystal structure of mouse ORF10-Rae1-Nup98 complex
分子名称: 10 protein, MERCURY (II) ION, Peptidase S59 domain-containing protein, ...
著者Gao, P, Feng, H.
登録日2020-04-22
公開日2021-03-24
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Molecular mechanism underlying selective inhibition of mRNA nuclear export by herpesvirus protein ORF10.
Proc.Natl.Acad.Sci.USA, 117, 2020
2MZD
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BU of 2mzd by Molmil
Characterization of the p300 Taz2-p53 TAD2 Complex and Comparison with the p300 Taz2-p53 TAD1 Complex
分子名称: Cellular tumor antigen p53, Histone acetyltransferase p300
著者Miller Jenkins, L.M, Feng, H, Durell, S.R, Tagad, H.D, Mazur, S.J, Tropea, J.E, Bai, Y, Appella, E.
登録日2015-02-11
公開日2015-03-25
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Characterization of the p300 Taz2-p53 TAD2 Complex and Comparison with the p300 Taz2-p53 TAD1 Complex.
Biochemistry, 54, 2015
2K8F
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Structural Basis for the Regulation of p53 Function by p300
分子名称: Cellular tumor antigen p53, Histone acetyltransferase p300
著者Bai, Y, Feng, H, Jenkins, L.M, Durell, S.R, Wiodawer, A, Appella, E.
登録日2008-09-08
公開日2009-03-03
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural Basis for p300 Taz2-p53 TAD1 Binding and Modulation by Phosphorylation.
Structure, 17, 2009

 

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