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PDB: 40736 results

6R6Y
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BU of 6r6y by Molmil
Crystal structure of human carbonic anhydrase isozyme XII with 4-chloro-2-cyclohexylsulfanyl-N-(2-hydroxyethyl)-5-sulfamoyl-benzamide
Descriptor: 1,2-ETHANEDIOL, 4-chloranyl-2-cyclohexylsulfanyl-~{N}-(2-hydroxyethyl)-5-sulfamoyl-benzamide, Carbonic anhydrase 12, ...
Authors:Smirnov, A, Manakova, E, Grazulis, S.
Deposit date:2019-03-28
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Halogenated and di-substituted benzenesulfonamides as selective inhibitors of carbonic anhydrase isoforms.
Eur.J.Med.Chem., 185, 2020
5LIH
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BU of 5lih by Molmil
Structure of a peptide-substrate bound to PKCiota core kinase domain
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, MANGANESE (II) ION, ...
Authors:Soriano, E.V, Purkiss, A.G, McDonald, N.Q.
Deposit date:2016-07-14
Release date:2016-09-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:aPKC Inhibition by Par3 CR3 Flanking Regions Controls Substrate Access and Underpins Apical-Junctional Polarization.
Dev.Cell, 38, 2016
8G3G
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BU of 8g3g by Molmil
CryoEM structure of yeast recombination mediator Rad52
Descriptor: DNA repair and recombination protein RAD52
Authors:Deveryshetty, J, Basore, K, Rau, M, Fitzpatrick, J.A.J, Antony, E.
Deposit date:2023-02-07
Release date:2023-11-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Yeast Rad52 is a homodecamer and possesses BRCA2-like bipartite Rad51 binding modes.
Nat Commun, 14, 2023
7INS
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BU of 7ins by Molmil
STRUCTURE OF PORCINE INSULIN COCRYSTALLIZED WITH CLUPEINE Z
Descriptor: GENERAL PROTAMINE CHAIN, INSULIN (CHAIN A), INSULIN (CHAIN B), ...
Authors:Balschmidt, P, Hansen, F.B, Dodson, E, Dodson, G, Korber, F.
Deposit date:1991-09-03
Release date:1994-01-31
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of porcine insulin cocrystallized with clupeine Z.
Acta Crystallogr.,Sect.B, 47, 1991
6R8F
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BU of 6r8f by Molmil
Cryo-EM structure of the Human BRISC-SHMT2 complex
Descriptor: BRISC and BRCA1-A complex member 2,BRCC45 (BRE, BRISC and BRCA1-A complex member 2), BRISC complex subunit Abraxas 2, ...
Authors:Walden, M, Hesketh, E, Tian, L, Ranson, N.A, Greenberg, R.A, Zeqiraj, E.
Deposit date:2019-04-01
Release date:2019-06-05
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Metabolic control of BRISC-SHMT2 assembly regulates immune signalling.
Nature, 570, 2019
3GW6
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BU of 3gw6 by Molmil
Intramolecular Chaperone
Descriptor: BROMIDE ION, CALCIUM ION, CHLORIDE ION, ...
Authors:Schulz, E.C, Dickmanns, A, Ficner, R.
Deposit date:2009-03-31
Release date:2010-02-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of an intramolecular chaperone mediating triple-beta-helix folding.
Nat.Struct.Mol.Biol., 17, 2010
6AVB
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BU of 6avb by Molmil
CryoEM structure of Mical Oxidized Actin (Class 1)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle
Authors:Grintsevich, E.E, Ge, P, Sawaya, M.R, Yesilyurt, H.G, Terman, J.R, Zhou, Z.H, Reisler, E.
Deposit date:2017-09-01
Release date:2018-01-17
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Catastrophic disassembly of actin filaments via Mical-mediated oxidation.
Nat Commun, 8, 2017
5LL4
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BU of 5ll4 by Molmil
Crystal structure of human carbonic anhydrase isozyme II with 4-(1H-benzimidazol-1-ylacetyl)benzenesulfonamide
Descriptor: 4-[2-(benzimidazol-1-yl)ethanoyl]benzenesulfonamide, BICINE, Carbonic anhydrase 2, ...
Authors:Smirnov, A, Manakova, E, Grazulis, S.
Deposit date:2016-07-26
Release date:2017-08-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Combinatorial Design of Isoform-Selective N-Alkylated Benzimidazole-Based Inhibitors of Carbonic Anhydrases
Chemistryselect, 2017
6OGF
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BU of 6ogf by Molmil
70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Svidritskiy, E, Demo, G, Loveland, A.B, Xu, C, Korostelev, A.A.
Deposit date:2019-04-02
Release date:2019-09-25
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Extensive ribosome and RF2 rearrangements during translation termination.
Elife, 8, 2019
6OI1
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BU of 6oi1 by Molmil
Crystal structure of human WDR5 in complex with monomethyl L-arginine
Descriptor: (2S)-2-amino-5-[(N-methylcarbamimidoyl)amino]pentanoic acid, GLYCEROL, SULFATE ION, ...
Authors:Lorton, B.M, Harijan, R.K, Burgos, E, Bonanno, J.B, Almo, S.C, Shechter, D.
Deposit date:2019-04-08
Release date:2020-04-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:A Binary Arginine Methylation Switch on Histone H3 Arginine 2 Regulates Its Interaction with WDR5.
Biochemistry, 59, 2020
6OJ6
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BU of 6oj6 by Molmil
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (DLP_RNA)
Descriptor: Inner capsid protein VP2, RNA-directed RNA polymerase, Template, ...
Authors:Jenni, S, Salgado, E.N, Herrmann, T, Li, Z, Grant, T, Grigorieff, N, Trapani, S, Estrozi, L.F, Harrison, S.C.
Deposit date:2019-04-10
Release date:2019-04-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:In situ Structure of Rotavirus VP1 RNA-Dependent RNA Polymerase.
J.Mol.Biol., 431, 2019
8E04
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BU of 8e04 by Molmil
Structure of monomeric LRRK1
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 1
Authors:Reimer, J.M, Mathea, S, Chatterjee, D, Knapp, S, Leschziner, A.E.
Deposit date:2022-08-08
Release date:2023-08-30
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of LRRK1 and mechanisms of autoinhibition and activation.
Nat.Struct.Mol.Biol., 30, 2023
8G4Z
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BU of 8g4z by Molmil
E. coli DHFR complex with NADP+ and folate: EF-X off model by Laue diffraction (no electric field)
Descriptor: Dihydrofolate reductase, FOLIC ACID, MANGANESE (II) ION, ...
Authors:Greisman, J.B, Dalton, K.M, Brookner, D.E, Klureza, M.A, Hekstra, D.R.
Deposit date:2023-02-10
Release date:2024-01-03
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Perturbative diffraction methods resolve a conformational switch that facilitates a two-step enzymatic mechanism.
Proc.Natl.Acad.Sci.USA, 121, 2024
8G50
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BU of 8g50 by Molmil
E. coli DHFR complex with NADP+ and folate: EF-X excited state model by Laue diffraction (electric field along b axis; 8-fold extrapolation of structure factor differences)
Descriptor: Dihydrofolate reductase, FOLIC ACID, MANGANESE (II) ION, ...
Authors:Greisman, J.B, Dalton, K.M, Brookner, D.E, Klureza, M.A, Hekstra, D.R.
Deposit date:2023-02-10
Release date:2024-01-03
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Perturbative diffraction methods resolve a conformational switch that facilitates a two-step enzymatic mechanism.
Proc.Natl.Acad.Sci.USA, 121, 2024
3H2L
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BU of 3h2l by Molmil
Crystal structure of HCV NS5B polymerase in complex with a novel bicyclic dihydro-pyridinone inhibitor
Descriptor: N-{3-[(4aR,7aS)-1-(4-fluorobenzyl)-4-hydroxy-2-oxo-2,4a,5,6,7,7a-hexahydro-1H-cyclopenta[b]pyridin-3-yl]-1,1-dioxido-2H-1,2,4-benzothiadiazin-7-yl}methanesulfonamide, NS5B polymerase
Authors:Han, Q, Showalter, R.E, Zhou, Q, Kissinger, C.R.
Deposit date:2009-04-14
Release date:2009-12-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of tricyclic 5,6-dihydro-1H-pyridin-2-ones as novel, potent, and orally bioavailable inhibitors of HCV NS5B polymerase.
Bioorg.Med.Chem.Lett., 19, 2009
5M1O
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BU of 5m1o by Molmil
Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Cobalt
Descriptor: COBALT (II) ION, Phage terminase large subunit
Authors:Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A.
Deposit date:2016-10-09
Release date:2016-10-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism.
Nucleic Acids Res., 45, 2017
8OK7
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BU of 8ok7 by Molmil
Variant Surface Glycoprotein VSG558 NTD
Descriptor: Variant surface glycoprotein 558, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zeelen, J.P, Stebbins, C.E, van Straaten, M, Zhong, J.
Deposit date:2023-03-27
Release date:2023-09-13
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:A structural classification of the variant surface glycoproteins of the African trypanosomey.
Plos Negl Trop Dis, 17, 2023
6EZ4
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BU of 6ez4 by Molmil
NMR structure of the C-terminal domain of the human RPAP3 protein
Descriptor: RNA polymerase II-associated protein 3
Authors:Fabre, P, Chagot, M.E, Bragantini, B, Manival, X, Quinternet, M.
Deposit date:2017-11-14
Release date:2018-04-18
Last modified:2024-01-17
Method:SOLUTION NMR
Cite:The RPAP3-Cterminal domain identifies R2TP-like quaternary chaperones.
Nat Commun, 9, 2018
8GDY
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BU of 8gdy by Molmil
Crystal structure of the human PDI first domain with 9 mutations
Descriptor: 1,2-ETHANEDIOL, Protein disulfide-isomerase, THIOCYANATE ION
Authors:Forouhar, F, Banayan, N.E, Loughlin, B.L, Singh, S, Wong, V, Hunt, H.S, Handelman, S.K, Price, N, Hunt, J.F.
Deposit date:2023-03-06
Release date:2024-01-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Systematic enhancement of protein crystallization efficiency by bulk lysine-to-arginine (KR) substitution.
Protein Sci., 33, 2024
7JXU
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BU of 7jxu by Molmil
Structure of monobody 32 human MLKL pseudokinase domain complex
Descriptor: 1,2-ETHANEDIOL, Mixed lineage kinase domain-like protein, Monobody 32
Authors:Meng, Y, Garnish, S.E, Koide, A, Koide, S, Czabotar, P.E, Murphy, J.M.
Deposit date:2020-08-28
Release date:2021-03-10
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Conformational interconversion of MLKL and disengagement from RIPK3 precede cell death by necroptosis.
Nat Commun, 12, 2021
6U9L
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BU of 6u9l by Molmil
Imidazole-triggered RAS-specific subtilisin SUBT_BACAM
Descriptor: GLYCEROL, POTASSIUM ION, SUBTILISIN BPN', ...
Authors:Toth, E.A, Bryan, P.N, Orban, J.
Deposit date:2019-09-09
Release date:2020-09-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Engineering subtilisin proteases that specifically degrade active RAS.
Commun Biol, 4, 2021
6R71
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BU of 6r71 by Molmil
Crystal structure of human carbonic anhydrase isozyme XII with 2-(benzenesulfonyl)-4-chloro-N-(2-hydroxyethyl)-5-sulfamoyl-benzamide
Descriptor: 1,2-ETHANEDIOL, 4-chloranyl-~{N}-(2-hydroxyethyl)-2-(phenylsulfonyl)-5-sulfamoyl-benzamide, Carbonic anhydrase 12, ...
Authors:Smirnov, A, Manakova, E, Grazulis, S.
Deposit date:2019-03-28
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Halogenated and di-substituted benzenesulfonamides as selective inhibitors of carbonic anhydrase isoforms.
Eur.J.Med.Chem., 185, 2020
8OFF
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BU of 8off by Molmil
Structure of BARD1 ARD-BRCTs in complex with H2AKc15ub nucleosomes (Map1)
Descriptor: BRCA1 associated RING domain 1, DNA (142-MER), Histone H2A type 1, ...
Authors:Foglizzo, M, Burdett, H, Wilson, M.D, Zeqiraj, E.
Deposit date:2023-03-15
Release date:2023-10-11
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:BRCA1-BARD1 combines multiple chromatin recognition modules to bridge nascent nucleosomes.
Nucleic Acids Res., 51, 2023
6QXB
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BU of 6qxb by Molmil
NMR structure of peptide 7, characterized by a cis-4-amino-Pro residue, with a significant lower MIC on E. coli
Descriptor: PHE-VAL-CAP-TRP-PHE-SER-LYS-PHE-LEU-GLY-ARG-ILE-LEU-NH2
Authors:Brancaccio, D, Carotenuto, A, Merlino, F, Grieco, P, Novellino, E.
Deposit date:2019-03-07
Release date:2019-05-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Outcomes of Decorated Prolines in the Discovery of Antimicrobial Peptides from Temporin-L.
Chemmedchem, 14, 2019
6UJY
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BU of 6ujy by Molmil
HIV-1 wild-type reverse transcriptase-DNA complex with (-)-3TC-TP
Descriptor: Lamivudine Triphosphate, MAGNESIUM ION, SULFATE ION, ...
Authors:Lansdon, E.B.
Deposit date:2019-10-03
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.59456086 Å)
Cite:Elucidating molecular interactions ofL-nucleotides with HIV-1 reverse transcriptase and mechanism of M184V-caused drug resistance.
Commun Biol, 2, 2019

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