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PDB: 68 results

2DUD
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BU of 2dud by Molmil
Crystal structure of human mitochondrial single-stranded DNA-binding protein(hmtSSB)
Descriptor: Single-stranded DNA-binding protein
Authors:Dong, X, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-21
Release date:2007-01-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of human mitochondrial single-stranded DNA-binding protein(hmtSSB)
To be Published
7EV8
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BU of 7ev8 by Molmil
Structure of Human Parainfluenza Virus 3 Unassembled Nucleoprotein in Complex with its viral chaperone
Descriptor: Nucleoprotein, Phosphoprotein
Authors:Dong, X.F, Chen, Z.
Deposit date:2021-05-20
Release date:2021-11-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.234 Å)
Cite:Structural Basis of Human Parainfluenza Virus 3 Unassembled Nucleoprotein in Complex with Its Viral Chaperone.
J.Virol., 96, 2022
5FFG
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BU of 5ffg by Molmil
Crystal structure of integrin alpha V beta 6 head
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Dong, X, Springer, T.A.
Deposit date:2015-12-18
Release date:2017-01-25
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Force interacts with macromolecular structure in activation of TGF-beta.
Nature, 542, 2017
6KOX
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BU of 6kox by Molmil
Relaxed state of S65/T66 double-phosphorylated ubiquitin
Descriptor: Polyubiquitin-B
Authors:Dong, X, Tang, C.
Deposit date:2019-08-13
Release date:2019-08-28
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Ubiquitin is double-phosphorylated by PINK1 for enhanced pH-sensitivity of conformational switch.
Protein Cell, 10, 2019
5FFO
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BU of 5ffo by Molmil
Integrin alpha V beta 6 in complex with pro-TGF-beta
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Dong, X, Zhao, B, Springer, T.A.
Deposit date:2015-12-18
Release date:2017-01-25
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.49 Å)
Cite:Force interacts with macromolecular structure in activation of TGF-beta.
Nature, 542, 2017
3KT3
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BU of 3kt3 by Molmil
Crystal structure of S. cerevisiae tryptophanyl-tRNA synthetase in complex with TrpAMP
Descriptor: SULFATE ION, TRYPTOPHANYL-5'AMP, Tryptophanyl-tRNA synthetase, ...
Authors:Zhou, M, Dong, X, Zhong, C, Shen, N, Ding, J.
Deposit date:2009-11-24
Release date:2010-02-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of Saccharomyces cerevisiae tryptophanyl-tRNA synthetase: new insights into the mechanism of tryptophan activation and implications for anti-fungal drug design
Nucleic Acids Res., 38, 2010
7LR3
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BU of 7lr3 by Molmil
Complex of Fab 2/6.14 with domain 3 of P. berghei HAP2
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, D3_2/6.14 Fab heavy chain, D3_2/6.14 Fab light chain, ...
Authors:Feng, J, Dong, X.C, Lu, C.F, Springer, T.A.
Deposit date:2021-02-15
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of malaria transmission blockade by a monoclonal antibody to gamete fusogen HAP2.
Elife, 10, 2021
7LR4
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BU of 7lr4 by Molmil
Complex of Fab 2/1.12 with domain 3 of P. berghei HAP2
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, D3_2/1.12 Fab heavy chain, D3_2/1.12 Fab light chain, ...
Authors:Feng, J, Dong, X.C, Su, Y, Lu, X.F, Springer, T.A.
Deposit date:2021-02-15
Release date:2021-12-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of malaria transmission blockade by a monoclonal antibody to gamete fusogen HAP2.
Elife, 10, 2021
7TAD
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BU of 7tad by Molmil
CryoEM structure of the (NPR1)2-(TGA3)2 complex
Descriptor: PALMITIC ACID, Regulatory protein NPR1, Transcription factor TGA3, ...
Authors:Wu, Q, Zhou, Y, Bartesaghi, A, Dong, X, Zhou, P.
Deposit date:2021-12-20
Release date:2022-03-16
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis of NPR1 in activating plant immunity.
Nature, 605, 2022
7TAC
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BU of 7tac by Molmil
Cryo-EM structure of the (TGA3)2-(NPR1)2-(TGA3)2 complex
Descriptor: PALMITIC ACID, Regulatory protein NPR1, Transcription factor TGA3, ...
Authors:Wu, Q, Zhou, Y, Bartesaghi, A, Dong, X, Zhou, P.
Deposit date:2021-12-20
Release date:2022-03-16
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis of NPR1 in activating plant immunity.
Nature, 605, 2022
5VBT
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BU of 5vbt by Molmil
Crystal structure of a highly specific and potent USP7 ubiquitin variant inhibitor
Descriptor: UBH04
Authors:DONG, A, DONG, X, LIU, L, GUO, Y, LI, Y, ZHANG, W, WALKER, J.R, SIDHU, S, Bountra, C, Arrowsmith, C.H, Edwards, A.M, TONG, Y, Structural Genomics Consortium (SGC)
Deposit date:2017-03-30
Release date:2017-06-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Crystal structure of a highly specific and potent USP7 ubiquitin variant inhibitor
to be published
7S0K
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BU of 7s0k by Molmil
HAP2 from Cyanidioschyzon merolae
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Feng, J, Dong, X.C, Springer, T.A.
Deposit date:2021-08-30
Release date:2022-07-06
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Monomeric prefusion structure of an extremophile gamete fusogen and stepwise formation of the postfusion trimeric state.
Nat Commun, 13, 2022
4C29
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BU of 4c29 by Molmil
Crystal Structure of High-Affinity von Willebrand Factor A1 domain with Disulfide Mutation
Descriptor: ACETATE ION, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Blenner, M.A, Dong, X, Springer, T.A.
Deposit date:2013-08-16
Release date:2014-01-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Towards the Structural Basis of Regulation of Von Willebrand Factor Binding to Glycoprotein Ib
J.Biol.Chem., 289, 2014
8JAH
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BU of 8jah by Molmil
Crystal structure of human CLEC12A C-type lectin domain
Descriptor: C-type lectin domain family 12 member A, POTASSIUM ION, SULFATE ION
Authors:Lei, Q, Tang, H, Dong, X.
Deposit date:2023-05-06
Release date:2024-03-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Mechanistic insights into the C-type lectin receptor CLEC12A-mediated immune recognition of monosodium urate crystal.
J.Biol.Chem., 300, 2024
4C2A
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BU of 4c2a by Molmil
Crystal Structure of High-Affinity von Willebrand Factor A1 domain with R1306Q and I1309V Mutations in Complex with High Affinity GPIb alpha
Descriptor: ACETATE ION, CACODYLATE ION, CALCIUM ION, ...
Authors:Blenner, M.A, Dong, X, Springer, T.A.
Deposit date:2013-08-16
Release date:2014-01-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.081 Å)
Cite:Towards the Structural Basis of Regulation of Von Willebrand Factor Binding to Glycoprotein Ib
J.Biol.Chem., 289, 2014
6WPG
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BU of 6wpg by Molmil
Structural Basis of Salicylic Acid Perception by Arabidopsis NPR Proteins
Descriptor: 2-HYDROXYBENZOIC ACID, Regulatory protein NPR4
Authors:Wang, W, Withers, J, Li, H, Zwack, P.J, Rusnac, D.V, Shi, H, Liu, L, Yan, S, Hinds, T.R, Guttman, M, Dong, X, Zheng, N.
Deposit date:2020-04-27
Release date:2020-08-12
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.283 Å)
Cite:Structural basis of salicylic acid perception by Arabidopsis NPR proteins.
Nature, 586, 2020
4C2B
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BU of 4c2b by Molmil
Crystal Structure of High-Affinity von Willebrand Factor A1 domain with Disulfide Mutation in Complex with High Affinity GPIb alpha
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, PLATELET GLYCOPROTEIN IB ALPHA CHAIN, ...
Authors:Blenner, M.A, Dong, X, Springer, T.A.
Deposit date:2013-08-16
Release date:2014-01-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Towards the Structural Basis of Regulation of Von Willebrand Factor Binding to Glycoprotein Ib
J.Biol.Chem., 289, 2014
3KT6
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BU of 3kt6 by Molmil
Crystal structure of S. cerevisiae tryptophanyl-tRNA synthetase in complex with Trp
Descriptor: SULFATE ION, TRYPTOPHAN, Tryptophanyl-tRNA synthetase, ...
Authors:Zhou, M, Dong, X, Zhong, C, Shen, N, Ding, J.
Deposit date:2009-11-24
Release date:2010-02-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of Saccharomyces cerevisiae tryptophanyl-tRNA synthetase: new insights into the mechanism of tryptophan activation and implications for anti-fungal drug design
Nucleic Acids Res., 38, 2010
3KT8
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BU of 3kt8 by Molmil
Crystal structure of S. cerevisiae tryptophanyl-tRNA synthetase in complex with L-tryptophanamide
Descriptor: L-TRYPTOPHANAMIDE, SULFATE ION, Tryptophanyl-tRNA synthetase, ...
Authors:Zhou, M, Dong, X, Zhong, C, Shen, N, Ding, J.
Deposit date:2009-11-24
Release date:2010-02-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures of Saccharomyces cerevisiae tryptophanyl-tRNA synthetase: new insights into the mechanism of tryptophan activation and implications for anti-fungal drug design
Nucleic Acids Res., 38, 2010
5YMY
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BU of 5ymy by Molmil
The structure of the complex between Rpn13 and K48-diUb
Descriptor: Proteasomal ubiquitin receptor ADRM1, Ubiquitin
Authors:Liu, Z, Dong, X, Gong, Z, Yi, H.W, Liu, K, Yang, J, Zhang, W.P, Tang, C.
Deposit date:2017-10-22
Release date:2019-03-13
Last modified:2019-04-24
Method:SOLUTION NMR
Cite:Structural basis for the recognition of K48-linked Ub chain by proteasomal receptor Rpn13.
Cell Discov, 5, 2019
3KT0
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BU of 3kt0 by Molmil
Crystal structure of S. cerevisiae tryptophanyl-tRNA synthetase
Descriptor: (2S)-1-{[(2S)-3-(2-methoxyethoxy)-2-methylpropyl]oxy}propan-2-amine, Tryptophanyl-tRNA synthetase, cytoplasmic
Authors:Zhou, M, Dong, X, Zhong, C, Shen, N, Ding, J.
Deposit date:2009-11-24
Release date:2010-02-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of Saccharomyces cerevisiae tryptophanyl-tRNA synthetase: new insights into the mechanism of tryptophan activation and implications for anti-fungal drug design
Nucleic Acids Res., 38, 2010
6IZT
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BU of 6izt by Molmil
Crystal structure of Haemophilus Influenzae BamA POTRA3-5
Descriptor: Outer membrane protein assembly factor BamA
Authors:Ma, X, Wang, Q, Li, Y, Tan, P, Wu, H, Wang, P, Dong, X, Hong, L, Meng, G.
Deposit date:2018-12-20
Release date:2019-10-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:How BamA recruits OMP substratesviapoly-POTRAs domain.
Faseb J., 33, 2019
6IZS
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BU of 6izs by Molmil
Crystal structure of Haemophilus influenzae BamA POTRA4
Descriptor: Outer membrane protein assembly factor BamA
Authors:Ma, X, Wang, Q, Li, Y, Tan, P, Wu, H, Wang, P, Dong, X, Hong, L, Meng, G.
Deposit date:2018-12-20
Release date:2019-10-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:How BamA recruits OMP substratesviapoly-POTRAs domain.
Faseb J., 33, 2019
6J09
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BU of 6j09 by Molmil
Crystal structure of Haemophilus Influenzae BamA POTRA1-4
Descriptor: Outer membrane protein assembly factor BamA
Authors:Ma, X, Wang, Q, Li, Y, Tan, P, Wu, H, Wang, P, Dong, X, Hong, L, Meng, G.
Deposit date:2018-12-21
Release date:2019-10-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:How BamA recruits OMP substratesviapoly-POTRAs domain.
Faseb J., 33, 2019
3JXE
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BU of 3jxe by Molmil
Crystal structure of Pyrococcus horikoshii tryptophanyl-tRNA synthetase in complex with TrpAMP
Descriptor: SULFATE ION, TRYPTOPHANYL-5'AMP, Tryptophanyl-tRNA synthetase
Authors:Zhou, M, Dong, X, Zhong, C, Shen, N, Yang, B, Ding, J.
Deposit date:2009-09-19
Release date:2009-11-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of P. horikoshii tryptophanyl-tRNA synthetase and structure-based phylogenetic analysis suggest an archaeal origin of tryptophanyl-tRNA synthetase
To be Published

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