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PDB: 53012 results

5KSZ
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BU of 5ksz by Molmil
hMiro EF hand and cGTPase domains in the GMPPCP-bound state
Descriptor: CHLORIDE ION, MAGNESIUM ION, Mitochondrial Rho GTPase 1, ...
Authors:Klosowiak, J.L, Focia, P.J, Rice, S.E, Freymann, D.M.
Deposit date:2016-07-10
Release date:2016-09-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into Parkin substrate lysine targeting from minimal Miro substrates.
Sci Rep, 6, 2016
7ZRS
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BU of 7zrs by Molmil
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
Authors:Best, K.M, Ikeuchi, K, Kater, L, Best, D.M, Musial, J, Matsuo, Y, Berninghausen, O, Becker, T, Inada, T, Beckmann, R.
Deposit date:2022-05-05
Release date:2023-02-22
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structural basis for clearing of ribosome collisions by the RQT complex.
Nat Commun, 14, 2023
7VP4
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BU of 7vp4 by Molmil
Structure of a transcription factor and DNA complex
Descriptor: DNA (5'-D(*AP*TP*GP*TP*GP*GP*TP*CP*CP*CP*CP*AP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*TP*GP*GP*GP*GP*AP*CP*CP*AP*CP*A)-3'), Transcription factor TCP10
Authors:Zhang, Y, Xu, Y.P, Wang, B, Su, X.D.
Deposit date:2021-10-15
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.04 Å)
Cite:Structural basis for DNA recognition by TCP transcription factors
To Be Published
5KTY
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BU of 5kty by Molmil
hMiro EF hand and cGTPase domains, GDP and Ca2+ bound state
Descriptor: CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Klosowiak, J.L, Focia, P.J, Rice, S.E, Freymann, D.M.
Deposit date:2016-07-12
Release date:2016-09-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.522 Å)
Cite:Structural insights into Parkin substrate lysine targeting from minimal Miro substrates.
Sci Rep, 6, 2016
6WKR
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BU of 6wkr by Molmil
PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome
Descriptor: DNA (314-MER), Histone H2A type 1, Histone H2B 1.1, ...
Authors:Kasinath, V, Nogales, E, Beck, C, Sauer, P, Poepsel, S, Kosmatka, J, Faini, M, Toso, D, Aebersold, R.
Deposit date:2020-04-16
Release date:2021-02-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:JARID2 and AEBP2 regulate PRC2 in the presence of H2AK119ub1 and other histone modifications.
Science, 371, 2021
6APR
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BU of 6apr by Molmil
STRUCTURES OF COMPLEXES OF RHIZOPUSPEPSIN WITH PEPSTATIN AND OTHER STATINE-CONTAINING INHIBITORS
Descriptor: PEPSTATIN, RHIZOPUSPEPSIN
Authors:Suguna, K, Davies, D.R.
Deposit date:1989-08-03
Release date:1991-04-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of complexes of rhizopuspepsin with pepstatin and other statine-containing inhibitors.
Proteins, 13, 1992
5CWR
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BU of 5cwr by Molmil
Crystal Structure of human DNA polymerase lambda L431A mutant in complex with a one nucleotide DNA gap and dCTP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), ...
Authors:Liu, M.S, Tsai, M.D.
Deposit date:2015-07-28
Release date:2016-02-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5D01
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BU of 5d01 by Molmil
Crystal structure of BshA from B. subtilis complexed with N-acetylglucosaminyl-malate
Descriptor: (2S)-2-{[2-acetamido-2-deoxy-alpha-D-glucopyranosyl]oxy}butanedioic acid, N-acetyl-alpha-D-glucosaminyl L-malate synthase
Authors:Cook, P.D, Winchell, K.R.
Deposit date:2015-08-02
Release date:2016-09-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:A Structural, Functional, and Computational Analysis of BshA, the First Enzyme in the Bacillithiol Biosynthesis Pathway.
Biochemistry, 55, 2016
7SEF
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BU of 7sef by Molmil
Structure of E. coli LetB delta (Ring6) mutant, Ring 1 in the open state (Model 2, Rings 1-3 only)
Descriptor: MCE family protein, Intermembrane transport protein YebT chimera
Authors:Vieni, C, Coudray, N, Bhabha, G, Ekiert, D.
Deposit date:2021-09-30
Release date:2022-02-09
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.55 Å)
Cite:Role of Ring6 in the Function of the E. coli MCE Protein LetB.
J.Mol.Biol., 434, 2022
7VP5
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BU of 7vp5 by Molmil
Structure of a transcription factor and DNA complex
Descriptor: DNA (5'-D(*AP*TP*GP*TP*GP*GP*TP*CP*CP*CP*GP*TP*GP*T)-3'), Transcription factor TCP10
Authors:Zhang, Y, Xu, Y.P, Wang, B, Su, X.D.
Deposit date:2021-10-15
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.992 Å)
Cite:Structural basis for DNA recognition by TCP transcription factors
To Be Published
5MAO
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BU of 5mao by Molmil
HERA HELICASE RNA BINDING DOMAIN with TNCS in P212121
Descriptor: Heat resistant RNA dependent ATPase, SULFATE ION
Authors:Rudolph, M.G, Klostermeier, D.
Deposit date:2016-11-03
Release date:2016-12-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal Structure of HERA CTD
To be published
5MAV
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BU of 5mav by Molmil
Crystal structure of human PCNA in complex with PARG (poly(ADP-ribose) glycohydrolase) peptide.
Descriptor: Poly (ADP-ribose) glycohydrolase, Proliferating cell nuclear antigen
Authors:Grishkovskaya, I, Djinovic-Carugo, K, Slade, D.
Deposit date:2016-11-06
Release date:2017-08-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.575 Å)
Cite:A novel non-canonical PIP-box mediates PARG interaction with PCNA.
Nucleic Acids Res., 45, 2017
6WCQ
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BU of 6wcq by Molmil
Structure of a substrate-bound DQC ubiquitin ligase
Descriptor: Cullin-1, F-box/LRR-repeat protein 17, Kelch-like ECH-associated protein 1, ...
Authors:Mena, E.L, Jevtic, P, Greber, B.J, Gee, C.L, Lew, B.G, Akopian, D, Nogales, E, Kuriyan, J, Rape, M.
Deposit date:2020-03-31
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (8.5 Å)
Cite:Structural basis for dimerization quality control.
Nature, 586, 2020
6G69
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BU of 6g69 by Molmil
Crystal structure of a parallel seven-helix coiled coil CC-Type2-IL-Sg-L17E
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CC-Type2-IL-Sg-L17E
Authors:Rhys, G.G, Brady, R.L, Woolfson, D.N.
Deposit date:2018-04-01
Release date:2018-10-17
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Maintaining and breaking symmetry in homomeric coiled-coil assemblies.
Nat Commun, 9, 2018
6G6O
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BU of 6g6o by Molmil
Crystal structure of the computationally designed Ika8 protein: crystal packing No.1 in P63
Descriptor: GLYCEROL, Ika8
Authors:Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
Deposit date:2018-04-01
Release date:2018-11-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6WUE
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BU of 6wue by Molmil
Tetragonal crystal form of SbtB from Synechocystis PCC6803
Descriptor: ISOPROPYL ALCOHOL, Membrane-associated protein slr1513, SODIUM ION
Authors:Bu, G, Simmons, C.R, Nielsen, D.R, Nannenga, B.L.
Deposit date:2020-05-04
Release date:2020-08-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Tetragonal crystal form of the cyanobacterial bicarbonate-transporter regulator SbtB from Synechocystis sp. PCC 6803.
Acta Crystallogr.,Sect.F, 76, 2020
6ZB8
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BU of 6zb8 by Molmil
Exo-beta-1,3-glucanase from moose rumen microbiome, active site mutant E167Q/E295Q
Descriptor: Exo-beta-1,3-glucanase variant E167Q/E295Q, POLYETHYLENE GLYCOL (N=34)
Authors:Kalyani, D.C, Reichenbach, T, Aspeborg, H, Divne, C.
Deposit date:2020-06-08
Release date:2021-01-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:A homodimeric bacterial exo-beta-1,3-glucanase derived from moose rumen microbiome shows a structural framework similar to yeast exo-beta-1,3-glucanases.
Enzyme.Microb.Technol., 143, 2021
6ZCN
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BU of 6zcn by Molmil
Crystal structure of YTHDC1 with m6A
Descriptor: N6-METHYLADENOSINE-5'-MONOPHOSPHATE, SULFATE ION, YTHDC1
Authors:Bedi, R.K, Huang, D, Wiedmer, L, Caflisch, A.
Deposit date:2020-06-11
Release date:2020-07-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Atomistic and Thermodynamic Analysis of N6-Methyladenosine (m 6 A) Recognition by the Reader Domain of YTHDC1.
J Chem Theory Comput, 17, 2021
6ZL4
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BU of 6zl4 by Molmil
the structure of glutamate transporter homologue GltTk in complex with the photo switchable compound (cis)
Descriptor: (2~{S},3~{S})-2-azanyl-3-[[4-[2-(4-methoxyphenyl)hydrazinyl]phenyl]methoxy]butanedioic acid, DECYL-BETA-D-MALTOPYRANOSIDE, DI(HYDROXYETHYL)ETHER, ...
Authors:Arkhipova, V, Slotboom, D.J, Guskov, A.
Deposit date:2020-06-30
Release date:2021-01-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Aspects of Photopharmacology: Insight into the Binding of Photoswitchable and Photocaged Inhibitors to the Glutamate Transporter Homologue.
J.Am.Chem.Soc., 143, 2021
6HUP
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BU of 6hup by Molmil
CryoEM structure of human full-length alpha1beta3gamma2L GABA(A)R in complex with diazepam (Valium), GABA and megabody Mb38.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 7-CHLORO-1-METHYL-5-PHENYL-1,3-DIHYDRO-2H-1,4-BENZODIAZEPIN-2-ONE, GAMMA-AMINO-BUTANOIC ACID, ...
Authors:Masiulis, S, Desai, R, Uchanski, T, Serna Martin, I, Laverty, D, Karia, D, Malinauskas, T, Jasenko, Z, Pardon, E, Kotecha, A, Steyaert, J, Miller, K.W, Aricescu, A.R.
Deposit date:2018-10-09
Release date:2019-01-02
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:GABAAreceptor signalling mechanisms revealed by structural pharmacology.
Nature, 565, 2019
4YL2
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BU of 4yl2 by Molmil
Aerococcus viridans L-lactate oxidase Y191F mutant
Descriptor: FLAVIN MONONUCLEOTIDE, Lactate oxidase, PYRUVIC ACID
Authors:Rainer, D, Nidetzky, B, Wilson, D.K.
Deposit date:2015-03-04
Release date:2015-08-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Speeding up the product release: a second-sphere contribution from Tyr191 to the reactivity of l-lactate oxidase revealed in crystallographic and kinetic studies of site-directed variants.
Febs J., 282, 2015
7TZ1
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BU of 7tz1 by Molmil
Crystal Structure of a Mycobacteriophage Cluster A2 Immunity Repressor:DNA Complex
Descriptor: DNA (5'-D(P*CP*CP*CP*GP*CP*TP*TP*GP*AP*CP*AP*GP*CP*CP*AP*CP*CP*GP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*CP*GP*GP*TP*GP*GP*CP*TP*GP*TP*CP*AP*AP*GP*CP*GP*GP*G)-3'), Immunity repressor
Authors:McGinnis, R.J, Brambley, C.A, Stamey, B, Green, W.C, Gragg, K.N, Cafferty, E.R, Terwilliger, T.C, Hammel, M, Hollis, T.J, Miller, J.M, Gainey, M.D, Wallen, J.R.
Deposit date:2022-02-15
Release date:2022-07-20
Last modified:2022-07-27
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:A monomeric mycobacteriophage immunity repressor utilizes two domains to recognize an asymmetric DNA sequence.
Nat Commun, 13, 2022
8JFS
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BU of 8jfs by Molmil
Phosphate bound acylphosphatase from Deinococcus radiodurans at 1 Angstrom resolution
Descriptor: 1,2-ETHANEDIOL, Acylphosphatase, CITRIC ACID, ...
Authors:Khakerwala, Z, Kumar, A, Makde, R.D.
Deposit date:2023-05-18
Release date:2023-06-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1 Å)
Cite:Crystal structure of phosphate bound Acyl phosphatase mini-enzyme from Deinococcus radiodurans at 1 angstrom resolution.
Biochem.Biophys.Res.Commun., 671, 2023
5IWN
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BU of 5iwn by Molmil
Bacterial sodium channel pore domain, high bromide
Descriptor: BROMIDE ION, Ion transport protein
Authors:Shaya, D, Findeisen, F, Rohaim, A, Minor, D.L.
Deposit date:2016-03-22
Release date:2016-03-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.75 Å)
Cite:Unfolding of a Temperature-Sensitive Domain Controls Voltage-Gated Channel Activation.
Cell, 164, 2016
4YMA
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BU of 4yma by Molmil
Structure of the ligand-binding domain of GluA2 in complex with the antagonist CNG10109
Descriptor: (3R)-3-(3-carboxy-5-hydroxyphenyl)-L-proline, 1,2-ETHANEDIOL, ACETATE ION, ...
Authors:Moller, C, Tapken, D, Kastrup, J.S, Frydenvang, K.
Deposit date:2015-03-06
Release date:2015-08-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.895 Å)
Cite:Structure-Activity Relationship Study of Ionotropic Glutamate Receptor Antagonist (2S,3R)-3-(3-Carboxyphenyl)pyrrolidine-2-carboxylic Acid.
J.Med.Chem., 58, 2015

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