Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 53266 results

7T71
DownloadVisualize
BU of 7t71 by Molmil
Crystal Structure of Mevalonate 3,5-Bisphosphate Decarboxylase from Picrophilus Torridus
Descriptor: Mevalonate 3,5-bisphosphate decarboxylase, OLEIC ACID
Authors:Vinokur, J.M, Sawaya, M.R, Cascio, D, Collazo, M, Bowie, J.U.
Deposit date:2021-12-14
Release date:2021-12-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Crystal structure of mevalonate 3,5-bisphosphate decarboxylase reveals insight into the evolution of decarboxylases in the mevalonate metabolic pathways.
J.Biol.Chem., 298, 2022
1B6L
DownloadVisualize
BU of 1b6l by Molmil
HIV-1 PROTEASE COMPLEXED WITH MACROCYCLIC PEPTIDOMIMETIC INHIBITOR 4
Descriptor: 1-[2-(8-CARBAMOYLMETHYL-6,9-DIOXO-2-OXA-7,10-DIAZA-BICYCLO[11.2.2]HEPTADECA- 1(16),13(17),14-TRIEN-11-YL)-2-HYDROXY-ETHYL]-PIPERIDINE-2-CARBOXYLIC ACID TERT-BUTYLAMIDE, RETROPEPSIN, SULFATE ION
Authors:Martin, J.L, Begun, J, Schindeler, A, Wickramasinghe, W.A, Alewood, D, Alewood, P.F, Bergman, D.A, Brinkworth, R.I, Abbenante, G, March, D.R, Reid, R.C, Fairlie, D.P.
Deposit date:1999-01-17
Release date:2000-01-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Molecular recognition of macrocyclic peptidomimetic inhibitors by HIV-1 protease.
Biochemistry, 38, 1999
6M80
DownloadVisualize
BU of 6m80 by Molmil
Collagen peptide containing aza-proline and aza-glycine
Descriptor: 1,2-ETHANEDIOL, Collagen peptide containing aza-proline and aza-glycine, SULFATE ION
Authors:Chenoweth, D.M, Kasznel, A.J, Porter, N.J.
Deposit date:2018-08-21
Release date:2019-07-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Aza-proline effectively mimics l-proline stereochemistry in triple helical collagen.
Chem Sci, 10, 2019
7KMG
DownloadVisualize
BU of 7kmg by Molmil
LY-CoV555 neutralizing antibody against SARS-CoV-2
Descriptor: GLYCEROL, LY-CoV555 Fab heavy chain, LY-CoV555 Fab light chain, ...
Authors:Hendle, J, Pustilnik, A, Sauder, J.M, Coleman, K.A, Boyles, J.S, Dickinson, C.D.
Deposit date:2020-11-02
Release date:2021-01-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:The neutralizing antibody, LY-CoV555, protects against SARS-CoV-2 infection in nonhuman primates.
Sci Transl Med, 13, 2021
6S1C
DownloadVisualize
BU of 6s1c by Molmil
P3221 crystal form of the Ctf18-1-8/Pol2(1-528) complex
Descriptor: Chromosome transmission fidelity protein 18, Chromosome transmission fidelity protein 8, DNA polymerase epsilon catalytic subunit A, ...
Authors:Grabarczyk, D.B.
Deposit date:2019-06-18
Release date:2020-07-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (6.1 Å)
Cite:Ctf18-RFC and DNA Pol ε form a stable leading strand polymerase/clamp loader complex required for normal and perturbed DNA replication.
Nucleic Acids Res., 48, 2020
6V5N
DownloadVisualize
BU of 6v5n by Molmil
EGFR(T790M/V948R) in complex with LN2084
Descriptor: 3-[4-(4-fluorophenyl)-5-(2-phenyl-1H-pyrrolo[2,3-b]pyridin-4-yl)-1H-imidazol-2-yl]propan-1-ol, CHLORIDE ION, Epidermal growth factor receptor
Authors:Heppner, D.E, Eck, M.J.
Deposit date:2019-12-04
Release date:2020-04-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis for EGFR Mutant Inhibition by Trisubstituted Imidazole Inhibitors.
J.Med.Chem., 63, 2020
5MBD
DownloadVisualize
BU of 5mbd by Molmil
Structure of a bacterial light-regulated adenylyl cylcase
Descriptor: Beta subunit of photoactivated adenylyl cyclase, CHLORIDE ION, FLAVIN MONONUCLEOTIDE
Authors:Lindner, R, Hartmann, E, Tarnawski, M, Winkler, A, Frey, D, Reinstein, J, Meinhart, A, Schlichting, I.
Deposit date:2016-11-08
Release date:2017-04-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Photoactivation Mechanism of a Bacterial Light-Regulated Adenylyl Cyclase.
J. Mol. Biol., 429, 2017
5MCU
DownloadVisualize
BU of 5mcu by Molmil
New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LHG2)
Descriptor: 1,2-ETHANEDIOL, Cellular tumor antigen p53, DNA, ...
Authors:Golovenko, D, Rozenberg, H, Shakked, Z.
Deposit date:2016-11-10
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins.
Structure, 26, 2018
7E7M
DownloadVisualize
BU of 7e7m by Molmil
Crystal Structure Analysis of the Streptococcus agalactiae Ribose Binding Protein RbsB
Descriptor: D-ribose ABC transporter substrate-binding protein, beta-D-ribopyranose
Authors:Pan, L.X, Wang, B, Yang, L.Y, Yang, D.F.
Deposit date:2021-02-26
Release date:2022-03-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal Structure Analysis of the Streptococcus agalactiae Ribose Binding Protein RbsB
To be published
6YNT
DownloadVisualize
BU of 6ynt by Molmil
Crystal structure of the cAMP-dependent protein kinase A in complex with aminofasudil and PKI (5-24)
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 5-(1,4-diazepan-1-ylsulfonyl)isoquinolin-1-amine, ...
Authors:Oebbeke, M, Gerber, H.-D, Heine, A, Klebe, G.
Deposit date:2020-04-14
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Two Methods, One Goal: Structural Differences between Cocrystallization and Crystal Soaking to Discover Ligand Binding Poses.
Chemmedchem, 16, 2021
6P3M
DownloadVisualize
BU of 6p3m by Molmil
Tetrahydroprotoberberine N-methyltransferase in complex with S-adenosylhomocysteine
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, tetrahydroprotoberberine N-methyltransferase
Authors:Lang, D.E, Morris, J.S, Rowley, M, Torres, M.A, Maksimovich, V.A, Facchini, P.J, Ng, K.K.S.
Deposit date:2019-05-24
Release date:2019-08-14
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-function studies of tetrahydroprotoberberineN-methyltransferase reveal the molecular basis of stereoselective substrate recognition.
J.Biol.Chem., 294, 2019
3HSY
DownloadVisualize
BU of 3hsy by Molmil
High resolution structure of a dimeric GluR2 N-terminal domain (NTD)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glutamate receptor 2, SULFATE ION, ...
Authors:Rossmann, M, Sukumaran, M, Penn, A.C, Veprintsev, D.B, Greger, I.H.
Deposit date:2009-06-11
Release date:2010-06-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Subunit-selective N-terminal domain associations organize the formation of AMPA receptor heteromers
Embo J., 30, 2011
5F2P
DownloadVisualize
BU of 5f2p by Molmil
Crystal structure of the BRD9 bromodomain in complex with compound 3.
Descriptor: 2-(dimethylamino)-6-methyl-pyrido[4,3-d]pyrimidin-5-one, BRD9
Authors:Nar, H, Fiegen, D, Zoephel, A, Bader, G.
Deposit date:2015-12-02
Release date:2016-03-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-Based Design of an in Vivo Active Selective BRD9 Inhibitor.
J.Med.Chem., 59, 2016
6S7Z
DownloadVisualize
BU of 6s7z by Molmil
Fumarate hydratase of Mycobacterium tuberculosis in complex with formate and allosteric modulator N-(5-((3,4-Dihydroisoquinolin-2(1H)-yl)sulfonyl)-2-methoxyphenyl)-2-(4-oxo-3,4-dihydrophthalazin-1-yl)acetamide
Descriptor: FORMIC ACID, Fumarate hydratase class II, MAGNESIUM ION, ...
Authors:Whitehouse, A.J, Libardo, M.D, Kasbekar, M, Brear, P, Fischer, G, Thomas, C.J, Barry, C.E, Boshoff, H.I, Coyne, A.G, Abell, C.
Deposit date:2019-07-07
Release date:2019-09-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Targeting of Fumarate Hydratase fromMycobacterium tuberculosisUsing Allosteric Inhibitors with a Dimeric-Binding Mode.
J.Med.Chem., 62, 2019
1AO7
DownloadVisualize
BU of 1ao7 by Molmil
COMPLEX BETWEEN HUMAN T-CELL RECEPTOR, VIRAL PEPTIDE (TAX), AND HLA-A 0201
Descriptor: BETA-2 MICROGLOBULIN, ETHYL MERCURY ION, HLA-A 0201, ...
Authors:Garboczi, D.N, Ghosh, P, Utz, U, Fan, Q.R, Biddison, W.E, Wiley, D.C.
Deposit date:1997-07-21
Release date:1997-09-17
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the complex between human T-cell receptor, viral peptide and HLA-A2.
Nature, 384, 1996
5IN8
DownloadVisualize
BU of 5in8 by Molmil
Crystal structure of Q151H Aspergillus terreus aristolochene synthase
Descriptor: Aristolochene synthase, GLYCEROL, MAGNESIUM ION, ...
Authors:Chen, M, Christianson, D.W.
Deposit date:2016-03-07
Release date:2016-05-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Probing the Role of Active Site Water in the Sesquiterpene Cyclization Reaction Catalyzed by Aristolochene Synthase.
Biochemistry, 55, 2016
5MQG
DownloadVisualize
BU of 5mqg by Molmil
Crystal structure of CREBBP bromodomain complexed with CBP015
Descriptor: 1-(4-azanyl-3-methoxy-phenyl)ethanone, CREB-binding protein
Authors:Zhu, J, Spiliotopoulos, D, Caflisch, A.
Deposit date:2016-12-20
Release date:2017-04-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Virtual screen to NMR (VS2NMR): Discovery of fragment hits for the CBP bromodomain.
Bioorg. Med. Chem. Lett., 27, 2017
1AR9
DownloadVisualize
BU of 1ar9 by Molmil
P1/MAHONEY POLIOVIRUS, SINGLE SITE MUTANT H2142Y
Descriptor: MYRISTIC ACID, P1/MAHONEY POLIOVIRUS, SPHINGOSINE
Authors:Wien, M.W, Curry, S, Filman, D.J, Hogle, J.M.
Deposit date:1997-08-11
Release date:1997-12-03
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural studies of poliovirus mutants that overcome receptor defects.
Nat.Struct.Biol., 4, 1997
6ESS
DownloadVisualize
BU of 6ess by Molmil
Artificial imine reductase mutant S112A-N118P-K121A-S122M
Descriptor: IRIDIUM ION, Streptavidin, {N-(4-{[2-(amino-kappaN)ethyl]sulfamoyl-kappaN}phenyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}(chloro)[(1,2,3,4,5-eta)-1,2,3,4,5-pentamethylcyclopentadienyl]iridium(III)
Authors:Hestericova, M, Heinisch, T, Alonso-Cotchico, L, Marechal, J.-D, Vidossich, P, Ward, T.R.
Deposit date:2017-10-24
Release date:2018-01-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Directed Evolution of an Artificial Imine Reductase.
Angew. Chem. Int. Ed. Engl., 57, 2018
6M9W
DownloadVisualize
BU of 6m9w by Molmil
Structure of Mg-free KRAS4b (2-169) bound to GDP with the switch-I in fully open conformation
Descriptor: GTPase KRas, GUANOSINE-5'-DIPHOSPHATE
Authors:Dharmaiah, S, Tran, T.H, Yan, W, Simanshu, D.K.
Deposit date:2018-08-24
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of N-terminally processed KRAS provide insight into the role of N-acetylation.
Sci Rep, 9, 2019
3HRH
DownloadVisualize
BU of 3hrh by Molmil
Crystal Structure of Antigen 85C and Glycerol
Descriptor: Antigen 85-C, GLYCEROL
Authors:Boucau, J, Sanki, A.K, Umesiri, F.E, Sucheck, S.J, Ronning, D.R.
Deposit date:2009-06-09
Release date:2009-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Design, synthesis and biological evaluation of sugar-derived esters, alpha-ketoesters and alpha-ketoamides as inhibitors for Mycobacterium tuberculosis antigen 85C.
Mol Biosyst, 5, 2009
5MQO
DownloadVisualize
BU of 5mqo by Molmil
Glycoside hydrolase BT_1003
Descriptor: Non-reducing end beta-L-arabinofuranosidase
Authors:Basle, A, Ndeh, D, Rogowski, A, Cartmell, A, Luis, A.S, Venditto, I, Labourel, A, Gilbert, H.J.
Deposit date:2016-12-20
Release date:2017-03-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Complex pectin metabolism by gut bacteria reveals novel catalytic functions.
Nature, 544, 2017
5MCW
DownloadVisualize
BU of 5mcw by Molmil
New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LWC2)
Descriptor: Cellular tumor antigen p53, DNA, FORMYL GROUP, ...
Authors:Golovenko, D, Rozenberg, H, Shakked, Z.
Deposit date:2016-11-10
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins.
Structure, 26, 2018
7AM3
DownloadVisualize
BU of 7am3 by Molmil
Crystal structure of Peptiligase mutant - M222P
Descriptor: GLYCEROL, SULFATE ION, Subtilisin BPN'
Authors:Rozeboom, H.J, Janssen, D.J.
Deposit date:2020-10-08
Release date:2021-02-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:From thiol-subtilisin to omniligase: Design and structure of a broadly applicable peptide ligase.
Comput Struct Biotechnol J, 19, 2021
8PIQ
DownloadVisualize
BU of 8piq by Molmil
Crystal Structure of BRD4-BD1 with BI894999
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, DIMETHYL SULFOXIDE, ...
Authors:Kessler, D.
Deposit date:2023-06-22
Release date:2023-07-26
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.117 Å)
Cite:Crystal Structure of BRD4-BD1 with BI894999
To Be Published

224572

数据于2024-09-04公开中

PDB statisticsPDBj update infoContact PDBjnumon