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PDB: 53012 results

7JSK
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BU of 7jsk by Molmil
Structure of the NaCT-Citrate complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CITRIC ACID, SODIUM ION, ...
Authors:Sauer, D.B, Wang, B, Song, J, Rice, W.J, Wang, D.N.
Deposit date:2020-08-14
Release date:2021-02-24
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Structure and inhibition mechanism of the human citrate transporter NaCT.
Nature, 591, 2021
5IH9
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BU of 5ih9 by Molmil
MELK in complex with NVS-MELK8A
Descriptor: 1-methyl-4-[4-(4-{3-[(piperidin-4-yl)methoxy]pyridin-4-yl}-1H-pyrazol-1-yl)phenyl]piperazine, Maternal embryonic leucine zipper kinase
Authors:Sprague, E.R, Puleo, D.E.
Deposit date:2016-02-29
Release date:2016-06-01
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Toward the Validation of Maternal Embryonic Leucine Zipper Kinase: Discovery, Optimization of Highly Potent and Selective Inhibitors, and Preliminary Biology Insight.
J.Med.Chem., 59, 2016
5LO1
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BU of 5lo1 by Molmil
HSP90 WITH indazole derivative
Descriptor: 1-[2-Amino-4-(1,3-dihydro-isoindole-2-carbonyl)-quinazolin-6-yl]-cyclobutanecarboxylic acid ethylamide, Heat shock protein HSP 90-alpha
Authors:Graedler, U, Amaral, M, Schuetz, D.
Deposit date:2016-08-08
Release date:2017-11-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Ligand Desolvation Steers On-Rate and Impacts Drug Residence Time of Heat Shock Protein 90 (Hsp90) Inhibitors.
J. Med. Chem., 61, 2018
6UKJ
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BU of 6ukj by Molmil
Single-Particle Cryo-EM Structure of Plasmodium falciparum Chloroquine Resistance Transporter (PfCRT) 7G8 Isoform
Descriptor: CHOLESTEROL HEMISUCCINATE, Chloroquine resistance transporter, Fab Heavy Chain, ...
Authors:Kim, J, Tan, Y.Z, Wicht, K.J, Erramilli, S.K, Dhingra, S.K, Okombo, J, Vendome, J, Hagenah, L.M, Giacometti, S.I, Warren, A.L, Nosol, K, Roepe, P.D, Potter, C.S, Carragher, B, Kossiakoff, A.A, Quick, M, Fidock, D.A, Mancia, F.
Deposit date:2019-10-05
Release date:2019-12-04
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure and drug resistance of the Plasmodium falciparum transporter PfCRT.
Nature, 576, 2019
8JZU
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BU of 8jzu by Molmil
SLC15A4_TASL complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, TLR adapter,Green fluorescent protein, TSLAA-EGPF tag fusion protein
Authors:Zhang, S.S, Chen, X.D, Xie, M.
Deposit date:2023-07-06
Release date:2023-09-27
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Structural basis for recruitment of TASL by SLC15A4 in human endolysosomal TLR signaling.
Nat Commun, 14, 2023
5BRN
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BU of 5brn by Molmil
Human HGPRT in complex with (S)-HPEPHx, an acyclic nucleoside phosphonate
Descriptor: (2-{[(2S)-1-hydroxy-3-(6-oxo-1,6-dihydro-9H-purin-9-yl)propan-2-yl]oxy}ethyl)phosphonic acid, Hypoxanthine-guanine phosphoribosyltransferase, MAGNESIUM ION
Authors:Keough, D.T, Guddat, L.W, Kaiser, M.M, Hockova, D, Wang, T.-H, Janeba, Z.
Deposit date:2015-05-31
Release date:2015-10-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Synthesis and Evaluation of Novel Acyclic Nucleoside Phosphonates as Inhibitors of Plasmodium falciparum and Human 6-Oxopurine Phosphoribosyltransferases.
Chemmedchem, 10, 2015
4XFM
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BU of 4xfm by Molmil
Crystal structure of a domain of unknown function (DUF1537) from Pectobacterium atrosepticum (ECA3761), Target EFI-511609, with bound D-threonate, domain swapped dimer
Descriptor: THREONATE ION, Uncharacterized protein
Authors:Vetting, M.W, Al Obaidi, N.F, Toro, R, Morisco, L.L, Benach, J, Wasserman, S.R, Attonito, J.D, Scott Glenn, A, Chamala, S, Chowdhury, S, Lafleur, J, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-12-27
Release date:2015-04-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Assignment of function to a domain of unknown function: DUF1537 is a new kinase family in catabolic pathways for acid sugars.
Proc.Natl.Acad.Sci.USA, 113, 2016
8JZR
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BU of 8jzr by Molmil
Outward_facing SLC15A4 monomer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, lysosomal transporter,ALFA tag
Authors:Zhang, S.S, Chen, X.D, Xie, M.
Deposit date:2023-07-06
Release date:2023-09-27
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structural basis for recruitment of TASL by SLC15A4 in human endolysosomal TLR signaling.
Nat Commun, 14, 2023
5LT7
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BU of 5lt7 by Molmil
Structure of the Epigenetic Oncogene MMSET and inhibition by N-Alkyl Sinefungin Derivatives
Descriptor: Histone-lysine N-methyltransferase SETD2, THIOCYANATE ION, ZINC ION, ...
Authors:Tisi, D, Pathuri, P, Heightman, T.
Deposit date:2016-09-06
Release date:2016-10-05
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Structure of the Epigenetic Oncogene MMSET and Inhibition by N-Alkyl Sinefungin Derivatives.
ACS Chem. Biol., 11, 2016
6XT4
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BU of 6xt4 by Molmil
C3_HD-1069 (1BH-69) - fusion protein of helical bundle and repeat protein
Descriptor: 1BH_69
Authors:Bick, M.J, Hsia, Y, Sankaran, B, Baker, D.
Deposit date:2020-07-17
Release date:2020-12-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Design of multi-scale protein complexes by hierarchical building block fusion.
Nat Commun, 12, 2021
5M39
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BU of 5m39 by Molmil
Crystal structure of BRD4 BROMODOMAIN 1 IN COMPLEX WITH LIGAND 1
Descriptor: 6-(3,4-dimethoxyphenyl)-3-methyl-[1,2,4]triazolo[4,3-b]pyridazine, Bromodomain-containing protein 4
Authors:Kessler, D, Mayer, M, Engelhardt, H, Wolkerstorfer, B, Geist, L.
Deposit date:2016-10-14
Release date:2017-09-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Direct NMR Probing of Hydration Shells of Protein Ligand Interfaces and Its Application to Drug Design.
J. Med. Chem., 60, 2017
5B8I
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BU of 5b8i by Molmil
Crystal structure of Calcineurin A and Calcineurin B in complex with FKBP12 and FK506 from Coccidioides immitis RS
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID), Fox III, D, Dranow, D.M, Lorimer, D.D, Edwards, T.E.
Deposit date:2015-05-03
Release date:2015-05-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Harnessing calcineurin-FK506-FKBP12 crystal structures from invasive fungal pathogens to develop antifungal agents.
Nat Commun, 10, 2019
6R8U
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BU of 6r8u by Molmil
Escherichia coli AGPase in complex with AMP.
Descriptor: ADENOSINE MONOPHOSPHATE, Glucose-1-phosphate adenylyltransferase
Authors:Cifuente, J.O, Comino, N, D'Angelo, C, Marina, A, Gil-Carton, D, Albesa-Jove, D, Guerin, M.E.
Deposit date:2019-04-02
Release date:2020-02-05
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The allosteric control mechanism of bacterial glycogen biosynthesis disclosed by cryoEM
Biorxiv, 2020
7NEA
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BU of 7nea by Molmil
Crystal structure of branched-chain amino acid aminotransferase from Thermobaculum terrenum (M3 mutant).
Descriptor: Branched-chain-amino-acid aminotransferase, CHLORIDE ION, GLYCEROL, ...
Authors:Boyko, K.M, Petrova, T, Nikolaeva, A.Y, Zeifman, Y.S, Rakitina, T.V, Suplatov, D.A, Popov, V.O, Bezsudnova, E.Y.
Deposit date:2021-02-03
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Probing the role of the residues in the active site of the transaminase from Thermobaculum terrenum.
Plos One, 16, 2021
6R91
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BU of 6r91 by Molmil
Cryo-EM structure of NCP_THF2(-3)-UV-DDB
Descriptor: DNA damage-binding protein 1, DNA damage-binding protein 2, Histone H2A type 1-B/E, ...
Authors:Matsumoto, S, Cavadini, S, Bunker, R.D, Thoma, N.H.
Deposit date:2019-04-02
Release date:2019-06-12
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:DNA damage detection in nucleosomes involves DNA register shifting.
Nature, 571, 2019
4XHV
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BU of 4xhv by Molmil
Crystal structure of Drosophila Spinophilin-PDZ and a C-terminal peptide of Neurexin
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, LP20995p, ...
Authors:Driller, J.H, Muhammad, K.G.H, Reddy, S, Rey, U, Boehme, M.A, Hollmann, C, Ramesh, N, Depner, H, Luetzkendorf, J, Matkovic, T, Bergeron, D, Quentin, C, Schmoranzer, J, Goettfert, F, Holt, M, Wahl, M.C, Hell, S.W, Walter, A, Sigrist, S.J, Loll, B.
Deposit date:2015-01-06
Release date:2015-07-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Presynaptic spinophilin tunes neurexin signalling to control active zone architecture and function.
Nat Commun, 6, 2015
7NEB
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BU of 7neb by Molmil
Crystal structure of branched-chain amino acid aminotransferase from Thermobaculum terrenum (M4 mutant)
Descriptor: Branched-chain-amino-acid aminotransferase, PYRIDOXAL-5'-PHOSPHATE, SODIUM ION
Authors:Boyko, K.M, Petrova, T, Nikolaeva, A.Y, Zeifman, Y.S, Rakitina, T.V, Suplatov, D.A, Popov, V.O, Bezsudnova, E.Y.
Deposit date:2021-02-03
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Probing the role of the residues in the active site of the transaminase from Thermobaculum terrenum.
Plos One, 16, 2021
6UGT
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BU of 6ugt by Molmil
Crystal structure of the Fab fragment of PF06438179/GP1111 an infliximab biosimilar in a I-centered orthorhombic crystal form, Lot A
Descriptor: 1,2-ETHANEDIOL, PF06438179 Fab Heavy Chain, PF06438179 Fab Light Chain
Authors:Lerch, T.F, Sharpe, P, Mayclin, S.J, Edwards, T.E, Polleck, S, Rouse, J.C, Conlan, H.D.
Deposit date:2019-09-26
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structures of PF-06438179/GP1111, an Infliximab Biosimilar.
BioDrugs, 34, 2020
6B67
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BU of 6b67 by Molmil
Human PP2Calpha (PPM1A) complexed with cyclic peptide c(MpSIpYVA)
Descriptor: CALCIUM ION, Protein phosphatase 1A, cyclic peptide c(MpSIpYVA)
Authors:Dyda, F, Kosek, D.
Deposit date:2017-10-01
Release date:2018-04-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A trapped human PPM1A-phosphopeptide complex reveals structural features critical for regulation of PPM protein phosphatase activity.
J. Biol. Chem., 293, 2018
7AH2
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BU of 7ah2 by Molmil
Crystal structure of Zebrafish MDM2 RING domain homodimer
Descriptor: E3 ubiquitin-protein ligase Mdm2, ZINC ION
Authors:Magnussen, H.M, Huang, D.T.
Deposit date:2020-09-24
Release date:2021-01-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.872 Å)
Cite:Identification of a Catalytic Active but Non-Aggregating MDM2 RING Domain Variant.
J.Mol.Biol., 433, 2021
8GA3
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BU of 8ga3 by Molmil
CLC-ec1 R230C/L249C/C85A at pH 4.5 100mM Cl Turn
Descriptor: CHLORIDE ION, H(+)/Cl(-) exchange transporter ClcA
Authors:Fortea, E, Lee, S, Argyos, Y, Chadda, R, Ciftci, D, Huysmans, G, Robertson, J.L, Boudker, O, Accardi, A.
Deposit date:2023-02-22
Release date:2024-02-07
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis of pH-dependent activation in a CLC transporter.
Nat.Struct.Mol.Biol., 31, 2024
8GA1
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BU of 8ga1 by Molmil
CLC-ec1 R230C/L249C/C85A at pH 4.5 100mM Cl Swap
Descriptor: CHLORIDE ION, H(+)/Cl(-) exchange transporter ClcA
Authors:Fortea, E, Lee, S, Argyos, Y, Chadda, R, Ciftci, D, Huysmans, G, Robertson, J.L, Boudker, O, Accardi, A.
Deposit date:2023-02-22
Release date:2024-02-07
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural basis of pH-dependent activation in a CLC transporter.
Nat.Struct.Mol.Biol., 31, 2024
5J36
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BU of 5j36 by Molmil
Crystal structure of 60-mer BFDV Capsid Protein
Descriptor: Beak and feather disease virus capsid protein, PHOSPHATE ION
Authors:Sarker, S, Raidal, S, Aragao, D, Forwood, J.K.
Deposit date:2016-03-30
Release date:2016-05-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural insights into the assembly and regulation of distinct viral capsid complexes.
Nat Commun, 7, 2016
7NF2
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BU of 7nf2 by Molmil
Structure of T. atroviride Fdc variant TaFdcV in complex with prFMN crotonic acid adduct
Descriptor: ACETATE ION, Ferulic acid decarboxylase 1, MANGANESE (II) ION, ...
Authors:Saaret, A, Leys, D.
Deposit date:2021-02-05
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Directed evolution of prenylated FMN-dependent Fdc supports efficient in vivo isobutene production.
Nat Commun, 12, 2021
7NF4
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BU of 7nf4 by Molmil
Structure of A. niger Fdc T395M R435P P438W variant (AnFdcII) in complex with prFMN
Descriptor: Ferulic acid decarboxylase 1, MANGANESE (II) ION, POTASSIUM ION, ...
Authors:Saaret, A, Leys, D.
Deposit date:2021-02-05
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Directed evolution of prenylated FMN-dependent Fdc supports efficient in vivo isobutene production.
Nat Commun, 12, 2021

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