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PDB: 53012 results

7V19
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BU of 7v19 by Molmil
Local refinement of Band 3-II transmembrane domains, class 1 of erythrocyte ankyrin-1 complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Band 3 anion transport protein, CHOLESTEROL, ...
Authors:Vallese, F, Kim, K, Yen, L.Y, Johnston, J.D, Noble, A.J, Cali, T, Clarke, O.B.
Deposit date:2022-05-11
Release date:2022-07-20
Last modified:2022-07-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Architecture of the human erythrocyte ankyrin-1 complex.
Nat.Struct.Mol.Biol., 29, 2022
3G0C
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BU of 3g0c by Molmil
Crystal structure of dipeptidyl peptidase IV in complex with a pyrimidinedione inhibitor 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 7-(2-chlorobenzyl)-1,3-dimethyl-8-piperazin-1-yl-3,7-dihydro-1H-purine-2,6-dione, ...
Authors:Zhang, Z, Wallace, M.B, Feng, J, Stafford, J.A, Kaldor, S.W, Shi, L, Skene, R.J, Aertgeerts, K, Lee, B, Jennings, A, Xu, R, Kassel, D, Webb, D.R, Gwaltney, S.L.
Deposit date:2009-01-27
Release date:2010-02-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Design and Synthesis of Pyrimidinone and Pyrimidinedione Inhibitors of Dipeptidyl Peptidase IV.
J.Med.Chem., 54, 2011
5LQ7
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BU of 5lq7 by Molmil
Salmonella effector SpvD - G161 variant
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Przydacz, M, Grabe, G.J, Holden, D.W, Hare, S.A.
Deposit date:2016-08-16
Release date:2016-11-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Salmonella Effector SpvD Is a Cysteine Hydrolase with a Serovar-specific Polymorphism Influencing Catalytic Activity, Suppression of Immune Responses, and Bacterial Virulence.
J. Biol. Chem., 291, 2016
4WMF
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BU of 4wmf by Molmil
Crystal structure of catalytically inactive MERS-CoV 3CL protease (C148A) in spacegroup P212121
Descriptor: DI(HYDROXYETHYL)ETHER, MERS-CoV 3CL protease, TETRAETHYLENE GLYCOL
Authors:Lountos, G.T, Needle, D, Waugh, D.S.
Deposit date:2014-10-08
Release date:2015-05-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structures of the Middle East respiratory syndrome coronavirus 3C-like protease reveal insights into substrate specificity.
Acta Crystallogr.,Sect.D, 71, 2015
8CT7
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BU of 8ct7 by Molmil
Catalytic Core Domain of HIV-1 Integrase (F185K) bound with BI-224436
Descriptor: (2S)-tert-butoxy[4-(2,3-dihydropyrano[4,3,2-de]quinolin-7-yl)-2-methylquinolin-3-yl]acetic acid, 1,2-ETHANEDIOL, Integrase, ...
Authors:Gupta, K, Van Duyne, G.D, Eilers, G, Bushman, F.D.
Deposit date:2022-05-13
Release date:2023-02-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Structure of a HIV-1 IN-Allosteric inhibitor complex at 2.93 angstrom resolution: Routes to inhibitor optimization.
Plos Pathog., 19, 2023
3G2H
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BU of 3g2h by Molmil
Crystal structure of 1-(beta-D-glucopyranosyl)-4-substituted-1,2,3-triazoles in complex with glycogen phosphorylase
Descriptor: 1-beta-D-glucopyranosyl-4-phenyl-1H-1,2,3-triazole, DIMETHYL SULFOXIDE, Glycogen phosphorylase, ...
Authors:Chrysina, E.D, Bokor, E, Alexacou, K.-M, Charavgi, M.-D, Oikonomakos, G.N, Zographos, S.E, Leonidas, D.D, Oikonomakos, N.G, Somsak, L.
Deposit date:2009-01-31
Release date:2010-02-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Amide-1,2,3-triazole bioisosterism: the glycogen phosphorylase case
Tetrahedron: Asymmetry, 20, 2009
6XL0
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BU of 6xl0 by Molmil
Caulobacter crescentus FljK filament
Descriptor: Flagellin
Authors:Montemayor, E.J, Ploscariu, N.T, Sanchez, J.C, Parrell, D, Dillard, R.S, Shebelut, C.W, Ke, Z, Guerrero-Ferreira, R.C, Wright, E.R.
Deposit date:2020-06-27
Release date:2020-12-23
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Flagellar Structures from the Bacterium Caulobacter crescentus and Implications for Phage phi CbK Predation of Multiflagellin Bacteria
J.Bacteriol., 203, 2021
5LSU
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BU of 5lsu by Molmil
Structure of the Epigenetic Oncogene MMSET and inhibition by N-Alkyl Sinefungin Derivatives
Descriptor: Histone-lysine N-methyltransferase NSD2, S-ADENOSYLMETHIONINE, ZINC ION
Authors:Tisi, D, Pathuri, P, Heightman, T.
Deposit date:2016-09-05
Release date:2016-10-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structure of the Epigenetic Oncogene MMSET and Inhibition by N-Alkyl Sinefungin Derivatives.
ACS Chem. Biol., 11, 2016
8PT4
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BU of 8pt4 by Molmil
beta-Ureidopropionase tetramer
Descriptor: Beta-ureidopropionase
Authors:Cederfelt, D, Dobritzsch, D.
Deposit date:2023-07-13
Release date:2024-01-10
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:The Allosteric Regulation of Beta-Ureidopropionase Depends on Fine-Tuned Stability of Active-Site Loops and Subunit Interfaces.
Biomolecules, 13, 2023
6QPH
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BU of 6qph by Molmil
Dunaliella minimal PSI complex
Descriptor: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ...
Authors:Klaiman, D, Caspy, I, Nelson, N.
Deposit date:2019-02-14
Release date:2020-02-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure of a minimal photosystem I from the green alga Dunaliella salina.
Nat.Plants, 6, 2020
7YQD
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BU of 7yqd by Molmil
EM structure of human PA28gamma (wild-type)
Descriptor: Proteasome activator complex subunit 3
Authors:Chen, D.-D, Hao, J, Yun, C.-H.
Deposit date:2022-08-06
Release date:2022-09-21
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Atomic resolution Cryo-EM structure of human proteasome activator PA28 gamma.
Int.J.Biol.Macromol., 219, 2022
8IGC
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BU of 8igc by Molmil
Crystal structure of Bak bound to Bnip5 BH3
Descriptor: Bcl-2 homologous antagonist/killer, Protein BNIP5
Authors:Ku, B, Lim, D.
Deposit date:2023-02-20
Release date:2023-09-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.697 Å)
Cite:Crystal structure of Bak bound to the BH3 domain of Bnip5, a noncanonical BH3 domain-containing protein.
Proteins, 92, 2024
6NKL
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BU of 6nkl by Molmil
2.2 A resolution structure of VapBC-1 from nontypeable Haemophilus influenzae
Descriptor: Antitoxin VapB1, Ribonuclease VapC
Authors:Lovell, S, Kashipathy, M.M, Battaile, K.P, Molinaro, A.L, Daines, D.A.
Deposit date:2019-01-07
Release date:2019-04-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of VapBC-1 from Nontypeable Haemophilus influenzae and the Effect of PIN Domain Mutations on Survival during Infection.
J.Bacteriol., 201, 2019
5WWT
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BU of 5wwt by Molmil
Crystal structure of human NSun6/tRNA
Descriptor: Putative methyltransferase NSUN6, tRNA
Authors:Liu, R.J, Long, T, Wang, E.D.
Deposit date:2017-01-04
Release date:2017-06-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.197 Å)
Cite:Structural basis for substrate binding and catalytic mechanism of a human RNA:m5C methyltransferase NSun6
Nucleic Acids Res., 45, 2017
8UH0
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BU of 8uh0 by Molmil
SOS2 co-crystal structure with fragment bound (compound 10)
Descriptor: 8-hydroxyquinoline-2-carbonitrile, Son of sevenless homolog 2
Authors:Gunn, R.J, Lawson, J.D.
Deposit date:2023-10-06
Release date:2024-01-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Discovery of Five SOS2 Fragment Hits with Binding Modes Determined by SOS2 X-Ray Cocrystallography.
J.Med.Chem., 67, 2024
7JWT
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BU of 7jwt by Molmil
Crystal structure of human ALDH1A1 bound to compound (R)-28
Descriptor: 6-{[(1R)-1-(3-hydroxyphenyl)ethyl]sulfanyl}-1-methyl-5-phenyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one, CHLORIDE ION, Retinal dehydrogenase 1, ...
Authors:Hurley, T.D, Buchman, C.
Deposit date:2020-08-26
Release date:2020-12-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Development of 2,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one inhibitors of aldehyde dehydrogenase 1A (ALDH1A) as potential adjuncts to ovarian cancer chemotherapy.
Eur.J.Med.Chem., 211, 2020
8IBO
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BU of 8ibo by Molmil
Crystal structure of Wild-Type Mycobacterium tuberculosis ClpC1 N-terminal domain in complex with Lassomycin
Descriptor: ACETATE ION, Lassomycin, Negative regulator of genetic competence ClpC/mecB
Authors:Jagdev, M.K, Vasudevan, D.
Deposit date:2023-02-10
Release date:2023-09-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structure of the N-terminal domain of MtClpC1 in complex with the anti-mycobacterial natural peptide Lassomycin.
Int.J.Biol.Macromol., 253, 2023
5I0L
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BU of 5i0l by Molmil
Crystal structure of the catalytic domain of MMP-12 in complex with a selective sugar-conjugated arylsulfonamide carboxylate water-soluble inhibitor (DC27).
Descriptor: (2R)-2-[{(E)-2-[({(2R,3R,4R,5S,6R)-3-(acetylamino)-4,5-bis(acetyloxy)-6-[(acetyloxy)methyl]tetrahydro-2H-pyran-2-yl}carbamothioyl)amino]ethenyl}(biphenyl-4-ylsulfonyl)amino]-3-methylbutanoic acid, 1,2-ETHANEDIOL, CALCIUM ION, ...
Authors:Stura, E.A, Rosalia, L, Cuffaro, D, Tepshi, L, Ciccone, L, Rossello, A.
Deposit date:2016-02-04
Release date:2016-07-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Sugar-Based Arylsulfonamide Carboxylates as Selective and Water-Soluble Matrix Metalloproteinase-12 Inhibitors.
Chemmedchem, 11, 2016
7A78
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BU of 7a78 by Molmil
Crystal structure of RXR beta LBD in complexes with palmitic acid and GRIP-1 peptide
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Nuclear receptor coactivator 2, ...
Authors:Chaikuad, A, Merk, D, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-08-27
Release date:2020-10-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Comprehensive Set of Tertiary Complex Structures and Palmitic Acid Binding Provide Molecular Insights into Ligand Design for RXR Isoforms.
Int J Mol Sci, 21, 2020
7AAC
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BU of 7aac by Molmil
Crystal structure of the catalytic domain of human PARP1 in complex with veliparib
Descriptor: (2R)-2-(7-carbamoyl-1H-benzimidazol-2-yl)-2-methylpyrrolidinium, Poly [ADP-ribose] polymerase 1, SULFATE ION
Authors:Schimpl, M, Ogden, T.E.H, Yang, J.-C, Easton, L.E, Underwood, E, Rawlins, P.B, Johannes, J.W, Embrey, K.J, Neuhaus, D.
Deposit date:2020-09-04
Release date:2021-01-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.593 Å)
Cite:Dynamics of the HD regulatory subdomain of PARP-1; substrate access and allostery in PARP activation and inhibition.
Nucleic Acids Res., 49, 2021
7YQC
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BU of 7yqc by Molmil
EM structure of human PA28gamma
Descriptor: Proteasome activator complex subunit 3
Authors:Chen, D.-D, Hao, J, Shen, C.-H, Yun, C.-H.
Deposit date:2022-08-06
Release date:2022-09-21
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Atomic resolution Cryo-EM structure of human proteasome activator PA28 gamma.
Int.J.Biol.Macromol., 219, 2022
6STY
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BU of 6sty by Molmil
Human REXO2 exonuclease in complex with RNA.
Descriptor: CALCIUM ION, Oligoribonuclease, mitochondrial, ...
Authors:Malik, D, Szewczyk, M, Szczesny, R, Nowotny, M.
Deposit date:2019-09-12
Release date:2020-04-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Human REXO2 controls short mitochondrial RNAs generated by mtRNA processing and decay machinery to prevent accumulation of double-stranded RNA.
Nucleic Acids Res., 48, 2020
7ACH
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BU of 7ach by Molmil
CRYSTAL STRUCTURE OF ACTIVE KRAS G12D (GPPCP) IN COMPLEX WITH THE SOAKED DIMERIC INHIBITOR BI-5747
Descriptor: (3~{S})-5-oxidanyl-3-[2-[[6-[[3-[(1~{S})-6-oxidanyl-3-oxidanylidene-1,2-dihydroisoindol-1-yl]-1~{H}-indol-2-yl]methylamino]hexylamino]methyl]-1~{H}-indol-3-yl]-2,3-dihydroisoindol-1-one, GTPase KRas, MAGNESIUM ION, ...
Authors:Kessler, D.
Deposit date:2020-09-10
Release date:2020-11-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:CRYSTAL STRUCTURE OF ACTIVE KRAS G12D (GPPCP) IN COMPLEX WITH THE SOAKED DIMERIC INHIBITOR BI-5747
To Be Published
7SB7
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BU of 7sb7 by Molmil
Crystal structure of T. brucei hypoxanthine guanine phosphoribosyltransferase in complex with (4S,7S)-7-hydroxy-4-((guanin-9-yl)methyl)-2,5-dioxaheptan-1,7-diphosphonate
Descriptor: ({(2S)-3-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-[(2S)-2-hydroxy-2-phosphonoethoxy]propoxy}methyl)phosphonic acid, Hypoxanthine-guanine phosphoribosyltransferase
Authors:Guddat, L.W, Keough, D.T.
Deposit date:2021-09-24
Release date:2022-03-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.64716625 Å)
Cite:Stereo-Defined Acyclic Nucleoside Phosphonates are Selective and Potent Inhibitors of Parasite 6-Oxopurine Phosphoribosyltransferases.
J.Med.Chem., 65, 2022
4WKV
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BU of 4wkv by Molmil
n-Alkylboronic Acid Inhibitors Reveal Determinants of Ligand Specificity in the Quorum-Quenching and Siderophore Biosynthetic Enzyme PvdQ
Descriptor: Acyl-homoserine lactone acylase PvdQ, GLYCEROL, trihydroxy(octyl)borate(1-)
Authors:Wu, R, Clevenger, K.D, Fast, W, Liu, D.
Deposit date:2014-10-03
Release date:2014-11-12
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1434 Å)
Cite:n-Alkylboronic Acid Inhibitors Reveal Determinants of Ligand Specificity in the Quorum-Quenching and Siderophore Biosynthetic Enzyme PvdQ.
Biochemistry, 53, 2014

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