Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 53012 件

5JX0
DownloadVisualize
BU of 5jx0 by Molmil
Temperature sensitive D4 mutant L110F
分子名称: CHLORIDE ION, GLYCEROL, Uracil-DNA glycosylase
著者Schormann, N, Chattopadhyay, D.
登録日2016-05-12
公開日2017-02-08
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Poxvirus uracil-DNA glycosylase-An unusual member of the family I uracil-DNA glycosylases.
Protein Sci., 25, 2016
6C4A
DownloadVisualize
BU of 6c4a by Molmil
Crystal structure of 3-nitropropionate modified isocitrate lyase from Mycobacterium tuberculosis with pyruvate
分子名称: 3-NITROPROPANOIC ACID, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ...
著者Kreitler, D.F, Ray, S, Murkin, A.S, Gulick, A.M.
登録日2018-01-11
公開日2018-06-06
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Nitro Group as a Masked Electrophile in Covalent Enzyme Inhibition.
ACS Chem. Biol., 13, 2018
8A3T
DownloadVisualize
BU of 8a3t by Molmil
S. cerevisiae APC/C-Cdh1 complex
分子名称: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 11, Anaphase-promoting complex subunit 2, ...
著者Barford, D, Vazquez-Fernandez, E, Zhang, Z, Yang, J.
登録日2022-06-09
公開日2022-08-31
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Cryo-EM structure of the S. cerevisiae APC/C-Cdh1 complex
To Be Published
6XUZ
DownloadVisualize
BU of 6xuz by Molmil
CRYSTAL STRUCTURE OF BRD4-BD1 WITH COMPOUND 4
分子名称: 6-[1-[(2~{S})-1-methoxypropan-2-yl]-6-[(3~{S})-3-methylmorpholin-4-yl]imidazo[4,5-c]pyridin-2-yl]-3-methyl-~{N}-propan-2-yl-[1,2,4]triazolo[4,3-a]pyrazin-8-amine, Bromodomain-containing protein 4
著者Bader, G, Kessler, D, Wolkerstorfer, B.
登録日2020-01-21
公開日2020-07-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.07 Å)
主引用文献PI by NMR: Probing CH-pi Interactions in Protein-Ligand Complexes by NMR Spectroscopy.
Angew.Chem.Int.Ed.Engl., 59, 2020
7ZZO
DownloadVisualize
BU of 7zzo by Molmil
HDAC2 in complex with an inhibitor
分子名称: 2-(cyclohexylazaniumyl)ethanesulfonate, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Cleasby, A, Tisi, D.
登録日2022-05-25
公開日2022-09-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Fragment-Based Discovery of a Novel, Brain Penetrant, Orally Active HDAC2 Inhibitor.
Acs Med.Chem.Lett., 13, 2022
8FLP
DownloadVisualize
BU of 8flp by Molmil
NMR Solution Structure of LvIC analogue
分子名称: Alpha-conotoxin LvIC analogue
著者Harvey, P.J, Craik, D.J.
登録日2022-12-22
公開日2023-02-08
最終更新日2023-02-22
実験手法SOLUTION NMR
主引用文献Discovery, Characterization, and Engineering of LvIC, an alpha 4/4-Conotoxin That Selectively Blocks Rat alpha 6/ alpha 3 beta 4 Nicotinic Acetylcholine Receptors.
J.Med.Chem., 66, 2023
4YGW
DownloadVisualize
BU of 4ygw by Molmil
RNase S in complex with stabilized S peptide
分子名称: 1-hydroxypropan-2-one, Ribonuclease A C2, S-peptide: ACE-LYS-GLU-THR-ALA-ALA-HCS-LYS-PHE-GLU-HCS-GLN-HIS-MET-ASP-SER, ...
著者Assem, N, Ferreira, D, Wolan, D.W, Dawson, P.E.
登録日2015-02-26
公開日2015-07-01
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Acetone-Linked Peptides: A Convergent Approach for Peptide Macrocyclization and Labeling.
Angew.Chem.Int.Ed.Engl., 54, 2015
7ZZT
DownloadVisualize
BU of 7zzt by Molmil
Ligand binding to HDAC2
分子名称: 1,2-ETHANEDIOL, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CALCIUM ION, ...
著者Cleasby, A, Tisi, D.
登録日2022-05-26
公開日2022-09-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Fragment-Based Discovery of a Novel, Brain Penetrant, Orally Active HDAC2 Inhibitor.
Acs Med.Chem.Lett., 13, 2022
7ZZP
DownloadVisualize
BU of 7zzp by Molmil
Structure of HDAC2 complexed with an inhibitory ligand
分子名称: (2S)-2-HYDROXYPROPANOIC ACID, 1,2-ETHANEDIOL, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ...
著者Cleasby, A, Tisi, D.
登録日2022-05-25
公開日2022-09-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Fragment-Based Discovery of a Novel, Brain Penetrant, Orally Active HDAC2 Inhibitor.
Acs Med.Chem.Lett., 13, 2022
7ZZR
DownloadVisualize
BU of 7zzr by Molmil
HDAC2 in complex with inhibitory ligand
分子名称: 1,2-ETHANEDIOL, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CALCIUM ION, ...
著者Cleasby, A, Tisi, D.
登録日2022-05-26
公開日2022-09-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.168 Å)
主引用文献Fragment-Based Discovery of a Novel, Brain Penetrant, Orally Active HDAC2 Inhibitor.
Acs Med.Chem.Lett., 13, 2022
4YIC
DownloadVisualize
BU of 4yic by Molmil
CRYSTAL STRUCTURE OF A TRAP TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM BORDETELLA BRONCHISEPTICA RB50 (BB0280, TARGET EFI-500035) WITH BOUND PICOLINIC ACID
分子名称: ACETATE ION, CALCIUM ION, IMIDAZOLE, ...
著者Vetting, M.W, Al Obaidi, N.F, Toro, R, Morisco, L.L, Benach, J, Koss, J, Wasserman, S.R, Attonito, J.D, Scott Glenn, A, Chamala, S, Chowdhury, S, Lafleur, J, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2015-03-01
公開日2015-04-01
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献CRYSTAL STRUCTURE OF A TRAP TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM BORDETELLA BRONCHISEPTICA RB50 (BB0280, TARGET EFI-500035) WITH BOUND PICOLINIC ACID
To be published
5KHT
DownloadVisualize
BU of 5kht by Molmil
Crystal structure of the N-terminal fragment of tropomyosin isoform Tpm1.1 at 1.5 A resolution
分子名称: DI(HYDROXYETHYL)ETHER, Tropomyosin alpha-1 chain,General control protein GCN4
著者Kostyukova, A.S, Krieger, I, Yoon, Y.-H, Tolkatchev, D, Samatey, F.A.
登録日2016-06-15
公開日2017-06-21
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.4964 Å)
主引用文献Structural destabilization of tropomyosin induced by the cardiomyopathy-linked mutation R21H.
Protein Sci., 27, 2018
7ZZW
DownloadVisualize
BU of 7zzw by Molmil
Ligand binding to HDAC2
分子名称: 1,2-ETHANEDIOL, 2-(cyclohexylazaniumyl)ethanesulfonate, CALCIUM ION, ...
著者Cleasby, A, Tisi, D.
登録日2022-05-26
公開日2022-09-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Fragment-Based Discovery of a Novel, Brain Penetrant, Orally Active HDAC2 Inhibitor.
Acs Med.Chem.Lett., 13, 2022
7ZZS
DownloadVisualize
BU of 7zzs by Molmil
HDAC2 complexed with an inhibitory ligand
分子名称: (5~{S})-5-(4-chlorophenyl)pyrrolidin-2-one, 1,2-ETHANEDIOL, 2-(cyclohexylazaniumyl)ethanesulfonate, ...
著者Cleasby, A, Tisi, D.
登録日2022-05-26
公開日2022-09-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Fragment-Based Discovery of a Novel, Brain Penetrant, Orally Active HDAC2 Inhibitor.
Acs Med.Chem.Lett., 13, 2022
4Y9D
DownloadVisualize
BU of 4y9d by Molmil
Crystal structure of LigD in complex with NADH from Sphingobium sp. strain SYK-6
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, C alpha-dehydrogenase
著者Pereira, J.H, McAndrew, R.P, Heins, R.A, Sale, K.L, Simmons, B.A, Adams, P.D.
登録日2015-02-17
公開日2016-03-09
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.012 Å)
主引用文献Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin beta-Aryl Ether Cleavage Pathway from Sphingobium sp. SYK-6.
J.Biol.Chem., 291, 2016
7ZZU
DownloadVisualize
BU of 7zzu by Molmil
Inhibitory Ligand binding to HDAC2
分子名称: 1,2-ETHANEDIOL, 2-[4-[(2~{R},4~{S})-4-phenylpyrrolidin-2-yl]carbonylpiperazin-1-yl]pyridine-3-carbonitrile, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ...
著者Cleasby, A, Tisi, D.
登録日2022-05-26
公開日2022-09-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Fragment-Based Discovery of a Novel, Brain Penetrant, Orally Active HDAC2 Inhibitor.
Acs Med.Chem.Lett., 13, 2022
5F96
DownloadVisualize
BU of 5f96 by Molmil
Crystal structure of broadly neutralizing VH1-46 germline-derived CD4-binding site-directed antibody CH235.12 in complex with HIV-1 clade A/E 93TH057 gp120
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, HEAVY CHAIN OF ANTIBODY CH235.12, ...
著者Zhou, T, Kwong, P.D.
登録日2015-12-09
公開日2016-03-09
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.2407 Å)
主引用文献Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic Antibody.
Cell, 165, 2016
8A0B
DownloadVisualize
BU of 8a0b by Molmil
Inhibitor binding to HDAC2
分子名称: 1,2-ETHANEDIOL, 1,3-dihydroisoindol-2-yl-[(2R,4S)-4-phenylpyrrolidin-1-ium-2-yl]methanone, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ...
著者Cleasby, A, Tisi, D.
登録日2022-05-27
公開日2022-09-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.746 Å)
主引用文献Fragment-Based Discovery of a Novel, Brain Penetrant, Orally Active HDAC2 Inhibitor.
Acs Med.Chem.Lett., 13, 2022
6C1S
DownloadVisualize
BU of 6c1s by Molmil
Phosphoinositide 3-Kinase gamma bound to an pyrrolopyridinone Inhibitor
分子名称: Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform, SULFATE ION, {4-[2-(5,6-dimethoxypyridin-3-yl)-5-oxo-5,7-dihydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-1H-pyrazol-1-yl}acetonitrile
著者Jacobs, M.D, Griffin, J.P.
登録日2018-01-05
公開日2018-06-27
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Design and Synthesis of a Novel Series of Orally Bioavailable, CNS-Penetrant, Isoform Selective Phosphoinositide 3-Kinase gamma (PI3K gamma ) Inhibitors with Potential for the Treatment of Multiple Sclerosis (MS).
J. Med. Chem., 61, 2018
6XWQ
DownloadVisualize
BU of 6xwq by Molmil
Structure of glutamate transporter homologue GltTk in the saturated conditions
分子名称: ASPARTIC ACID, Proton/glutamate symporter, SDF family
著者Arkhipova, V, Slotboom, D.J, Guskov, A.
登録日2020-01-24
公開日2020-03-04
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.41 Å)
主引用文献Structural ensemble of a glutamate transporter homologue in lipid nanodisc environment.
Nat Commun, 11, 2020
5K1R
DownloadVisualize
BU of 5k1r by Molmil
Structure of Burkholderia pseudomallei K96243 sphingosine-1-phosphate lyase Bpss2021
分子名称: Burkholderia pseudomallei sphingosine-1-phosphate lyase Bpss2021, PYRIDOXAL-5'-PHOSPHATE
著者Mclean, C.J, Campopiano, D.J, Marles-Wright, J.
登録日2016-05-18
公開日2016-11-02
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.104 Å)
主引用文献Characterization of homologous sphingosine-1-phosphate lyase isoforms in the bacterial pathogen Burkholderia pseudomallei.
J. Lipid Res., 58, 2017
8FEF
DownloadVisualize
BU of 8fef by Molmil
Structure of Mce1 transporter from Mycobacterium smegmatis (Map0)
分子名称: ABC transporter, ATP-binding protein,Green fluorescent protein chimera, ABC-transporter integral membrane protein, ...
著者Chen, J, Bhabha, G, Ekiert, D.C.
登録日2022-12-06
公開日2023-02-22
最終更新日2023-08-23
実験手法ELECTRON MICROSCOPY (2.71 Å)
主引用文献Structure of an endogenous mycobacterial MCE lipid transporter.
Nature, 620, 2023
8FED
DownloadVisualize
BU of 8fed by Molmil
Structure of Mce1-LucB complex from Mycobacterium smegmatis (Map1)
分子名称: ABC transporter, ATP-binding protein,Green fluorescent protein chimera, ABC-transporter integral membrane protein, ...
著者Chen, J, Bhabha, G, Ekiert, D.C.
登録日2022-12-06
公開日2023-02-22
最終更新日2023-08-23
実験手法ELECTRON MICROSCOPY (2.76 Å)
主引用文献Structure of an endogenous mycobacterial MCE lipid transporter.
Nature, 620, 2023
8FEE
DownloadVisualize
BU of 8fee by Molmil
Structure of Mce1 transporter from Mycobacterium smegmatis in the absence of LucB (Map2)
分子名称: ABC transporter, ATP-binding protein,Green fluorescent protein chimera, ABC-transporter integral membrane protein, ...
著者Chen, J, Bhabha, G, Ekiert, D.C.
登録日2022-12-06
公開日2023-02-22
最終更新日2023-08-23
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structure of an endogenous mycobacterial MCE lipid transporter.
Nature, 620, 2023
6XCH
DownloadVisualize
BU of 6xch by Molmil
Room-temperature X-ray Crystal structure of SARS-CoV-2 main protease in complex with Leupeptin
分子名称: 3C-like proteinase, Leupeptin
著者Kneller, D.W, Kovalevsky, A, Coates, L.
登録日2020-06-08
公開日2020-06-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Malleability of the SARS-CoV-2 3CL M pro Active-Site Cavity Facilitates Binding of Clinical Antivirals.
Structure, 28, 2020

223166

件を2024-07-31に公開中

PDB statisticsPDBj update infoContact PDBjnumon