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PDB: 53012 results

8GZ2
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Cryo-EM structure of human NaV1.6/beta1/beta2-4,9-anhydro-tetrodotoxin
Descriptor: (1R,2S,3S,4R,5R,9S,11S,12S,14R)-7-amino-2,4,12-trihydroxy-2-(hydroxymethyl)-10,13,15-trioxa-6,8-diazapentacyclo[7.4.1.1~3,12~.0~5,11~.0~5,14~]pentadec-7-en-8-ium (non-preferred name), 2-acetamido-2-deoxy-beta-D-glucopyranose, Sodium channel protein type 8 subunit alpha, ...
Authors:Li, Y, Jiang, D.
Deposit date:2022-09-24
Release date:2023-03-08
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of human Na V 1.6 channel reveals Na + selectivity and pore blockade by 4,9-anhydro-tetrodotoxin.
Nat Commun, 14, 2023
8ZX6
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Heparin bound Tau fibril PHF
Descriptor: Isoform Tau-F of Microtubule-associated protein tau
Authors:Tao, Y.Q, Liu, C, Li, D.
Deposit date:2024-06-13
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Heparin bound Tau fibril PHF
To Be Published
8Y6Z
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BU of 8y6z by Molmil
Crystal structure of the Marinitoga sp. Csx1-Crn2 fusion ribonuclease of type III CRISPR
Descriptor: CRISPR-associated protein
Authors:Zhang, D, Yuan, C.
Deposit date:2024-02-03
Release date:2024-07-17
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:Structural insight into the Csx1-Crn2 fusion self-limiting ribonuclease of type III CRISPR system.
Nucleic Acids Res., 2024
6OBV
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BU of 6obv by Molmil
Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases
Descriptor: fluvirucin B1 DH domain from module 1
Authors:McAndrew, R.P, Barajas, J.F, Pereira, J.H, Keasling, J.D, Adams, P.D.
Deposit date:2019-03-21
Release date:2019-06-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases.
J Ind Microbiol Biotechnol., 46, 2019
9BNQ
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N-(4-(isothiocyanatomethyl)phenyl)methanesulfonamide complexed with Macrophage Migration Inhibitory Factor
Descriptor: ISOPROPYL ALCOHOL, Macrophage migration inhibitory factor, N-{[4-(methanesulfonamido)phenyl]methyl}methanethioamide, ...
Authors:Fellner, M, Rutledge, M.T, Putha, L, Kok, L.K, Gamble, A.B, Wilbanks, S.M, Vernall, A.J, Tyndall, J.D.A.
Deposit date:2024-05-02
Release date:2024-07-24
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Covalent isothiocyanate inhibitors of macrophage migration inhibitory factor as potential colorectal cancer treatments.
Chemmedchem, 2024
6WEQ
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DENV1 NS1 in complex with neutralizing 2B7 Fab fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2B7 Fab fragment heavy chain, 2B7 Fab fragment light chain, ...
Authors:Akey, D.L, Smith, J.L.
Deposit date:2020-04-02
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for antibody inhibition of flavivirus NS1-triggered endothelial dysfunction.
Science, 371, 2021
8GJM
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17b10 fab in complex with full-length SARS-CoV-2 Spike G614 trimer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kwon, H.J, Zhang, J, Kosikova, M, Tang, W.C, Rodriguez, U.O, Peng, H.Q, Meseda, C.A, Pedro, C.L, Schmeisser, F, Lu, J.M, Zhou, B, Davis, C.T, Wentworth, D.E, Chen, W.H, Shriver, M.C, Pasetti, M.F, Weir, J.P, Chen, B, Xie, H.
Deposit date:2023-03-16
Release date:2023-04-05
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Distinct in vitro and in vivo neutralization profiles of monoclonal antibodies elicited by the receptor binding domain of the ancestral SARS-CoV-2.
J Med Virol, 95, 2023
8WMC
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Cryo-EM structure of DiCas7-11-crRNA in complex with regulator
Descriptor: CHAT domain-containing protein, CRISPR-associated RAMP family protein, RNA (38-MER), ...
Authors:Ma, H.Y, Tang, X.D.
Deposit date:2023-10-03
Release date:2024-05-29
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis of negative regulation of CRISPR-Cas7-11 by TPR-CHAT.
Signal Transduct Target Ther, 9, 2024
8WMI
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BU of 8wmi by Molmil
Cryo-EM structure of DiCas7-11 mutant in complex with crRNA
Descriptor: CRISPR-associated RAMP family protein, ZINC ION, crRNA (39-MER)
Authors:Ma, H.Y, Tang, X.D.
Deposit date:2023-10-03
Release date:2024-05-29
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Structural basis of negative regulation of CRISPR-Cas7-11 by TPR-CHAT.
Signal Transduct Target Ther, 9, 2024
9B3P
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BU of 9b3p by Molmil
The cryo-EM structure of the H2A.Z-H3.3 double-variant nucleosome
Descriptor: DNA (128-MER), Histone H2A.Z, Histone H2B 1.1, ...
Authors:Tan, D, Sokolova, V.
Deposit date:2024-03-19
Release date:2024-06-12
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural and Biochemical Characterization of the Nucleosome Containing Variants H3.3 and H2A.Z.
Epigenomes, 8, 2024
8WDF
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BU of 8wdf by Molmil
Chemoreceptor PilJ from Pseudomonas aeruginosa PA14
Descriptor: Chemotaxis chemoreceptor PilJ
Authors:Cui, R, Li, D.F.
Deposit date:2023-09-15
Release date:2024-07-24
Method:X-RAY DIFFRACTION (2.996 Å)
Cite:The ligand binding domain of a type IV pilus chemoreceptor PilJ has a different fold from that of another PilJ-type receptor McpN.
Biochem.Biophys.Res.Commun., 706, 2024
9B35
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BU of 9b35 by Molmil
Ligand-binding and transmembrane domains of kainate receptor GluK2 in the open state, a complex with agonist glutamate and positive allosteric modulator BPAM344
Descriptor: GLUTAMIC ACID, Glutamate receptor ionotropic, kainate 2
Authors:Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
Deposit date:2024-03-18
Release date:2024-05-22
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Kainate receptor channel opening and gating mechanism.
Nature, 630, 2024
8WM4
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BU of 8wm4 by Molmil
Cryo-EM structure of DiCas7-11 in complex with crRNA
Descriptor: CRISPR-associated RAMP family protein, ZINC ION, crRNA (38-MER)
Authors:Ma, H.Y, Tang, X.D.
Deposit date:2023-10-02
Release date:2024-05-29
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Structural basis of negative regulation of CRISPR-Cas7-11 by TPR-CHAT.
Signal Transduct Target Ther, 9, 2024
8Z9A
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BU of 8z9a by Molmil
Cryo-EM structure of the insect olfactory receptor OR5-Orco heterocomplex from Acyrthosiphon pisum bound with geranyl acetate
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Odorant receptor, ApisOR5, ...
Authors:Wang, Y.D, Qiu, L, Guan, Z.Y, Wang, Q, Wang, G.R, Yin, P.
Deposit date:2024-04-23
Release date:2024-06-19
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis for odorant recognition of the insect odorant receptor OR-Orco heterocomplex.
Science, 384, 2024
8Y7F
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BU of 8y7f by Molmil
Crystal structure of CARF domain-truncated Csx1-Crn2 from Marinitoga sp.
Descriptor: CRISPR-associated protein
Authors:Zhang, D, Yuan, C, Lin, Z.
Deposit date:2024-02-04
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural insight into the Csx1-Crn2 fusion self-limiting ribonuclease of type III CRISPR system.
Nucleic Acids Res., 2024
7OWI
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BU of 7owi by Molmil
Crystal structure of dimeric chlorite dismutase variant R127A (CCld R127A) from Cyanothece sp. PCC7425
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Chlorite dismutase, DI(HYDROXYETHYL)ETHER, ...
Authors:Schmidt, D, Mlynek, G, Djinovic-Carugo, K, Obinger, C.
Deposit date:2021-06-18
Release date:2021-12-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Impact of the dynamics of the catalytic arginine on nitrite and chlorite binding by dimeric chlorite dismutase.
J.Inorg.Biochem., 227, 2021
9FGP
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BU of 9fgp by Molmil
cilia and flagella associated protein 299
Descriptor: Cilia- and flagella-associated protein 299, ZINC ION
Authors:Wright, N.D, Koekemoer, L, Structural Genomics Consortium (SGC)
Deposit date:2024-05-24
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:cilia and flagella associated protein 299
To Be Published
8W35
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BU of 8w35 by Molmil
Aca2 from Pectobacterium phage ZF40 bound to RNA
Descriptor: Anti-CRISPR associated (Aca) protein, Aca2, IR2 and IR-RBS RNA
Authors:Wilkinson, M.E, Birkholz, N, Kimanius, D, Fineran, P.C.
Deposit date:2024-02-21
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Phage anti-CRISPR control by an RNA- and DNA-binding helix-turn-helix protein.
Nature, 631, 2024
8BSE
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BU of 8bse by Molmil
CRYSTAL STRUCTURE OF SARS-COV-2 RECEPTOR BINDING DOMAIN (RBD) in complex with 1D1 Fab
Descriptor: 1D1 FAB HEAVY CHAIN, 1D1 FAB LIGHT CHAIN, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Welin, M, Kimbung, Y.R, Focht, D, Pisitkun, T.
Deposit date:2022-11-25
Release date:2023-05-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Efficacy of the combination of monoclonal antibodies against the SARS-CoV-2 Beta and Delta variants.
Plos One, 18, 2023
7OUY
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BU of 7ouy by Molmil
Crystal structure of dimeric chlorite dismutase variant R127A (CCld R127A) from Cyanothece sp. PCC7425 in complex with nitrite
Descriptor: Chlorite dismutase, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Schmidt, D, Mlynek, G, Djinovic-Carugo, K, Obinger, C.
Deposit date:2021-06-14
Release date:2021-12-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Impact of the dynamics of the catalytic arginine on nitrite and chlorite binding by dimeric chlorite dismutase.
J.Inorg.Biochem., 227, 2021
8BSF
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BU of 8bsf by Molmil
CRYSTAL STRUCTURE OF SARS-COV-2 RECEPTOR BINDING DOMAIN (RBD-beta variant) in complex with 3D2 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3D2 FAB HEAVY CHAIN, 3D2 FAB LIGHT CHAIN, ...
Authors:Welin, M, Kimbung, Y.R, Focht, D, Pisitkun, T.
Deposit date:2022-11-25
Release date:2023-05-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Efficacy of the combination of monoclonal antibodies against the SARS-CoV-2 Beta and Delta variants.
Plos One, 18, 2023
8Z1E
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BU of 8z1e by Molmil
A homotrimeric GPCR architecture of the human cytomegalovirus (UL78) revealed by cryo-EM
Descriptor: Uncharacterized protein UL78
Authors:Chen, Y, Li, Y, Zhou, Q, Cong, Z, Lin, S, Yan, J, Chen, X, Yang, D, Ying, T, Wang, M.-W.
Deposit date:2024-04-11
Release date:2024-05-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:A homotrimeric GPCR architecture of the human cytomegalovirus revealed by cryo-EM.
Cell Discov, 10, 2024
8WQO
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BU of 8wqo by Molmil
Crystal structure of BRD4-BD1 bound with DI106
Descriptor: (3~{R})-6-[[4-(3,5-dimethyl-1~{H}-pyrazol-4-yl)pyrimidin-2-yl]amino]-1,3-dimethyl-4-propan-2-yl-3~{H}-quinoxalin-2-one, Isoform C of Bromodomain-containing protein 4
Authors:Cao, D, Xiong, B.
Deposit date:2023-10-12
Release date:2024-07-24
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Rational design and evaluation of BET-Aurora A dual-inhibitors for treatment of cancers
To Be Published
6OJV
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BU of 6ojv by Molmil
Crystal structure of human thymidylate synthase delta(7-29) in complex with dUMP and 2-amino-4-oxo-4,7-dihydro-pyrrolo[2,3-d]pyrimidine-methyl-phenyl-L-glutamic acid
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, N-{4-[(2-amino-4-hydroxy-7H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzoyl}-L-glutamic acid, Thymidylate synthase,Thymidylate synthase
Authors:Czyzyk, D.J, Anderson, K.S, Valhondo, M, Jorgensen, W.L.
Deposit date:2019-04-12
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.593 Å)
Cite:Understanding the structural basis of species selective, stereospecific inhibition for Cryptosporidium and human thymidylate synthase.
Febs Lett., 593, 2019
8VMB
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The crystal structure of rhinovirus C15 RNA replication element sB-loop mutant in complex with Fab BL3-6
Descriptor: Heavy Chain of Fab BL3-6, Light Chain of Fab BL3-6, RNA (83-MER)
Authors:Das, N.K, Koirala, D.
Deposit date:2024-01-13
Release date:2024-07-24
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:The crystal structure of rhinovirus C15 RNA replication element sB-loop mutant in complex with Fab BL3-6
To Be Published

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PDB entries from 2024-07-31

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